| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is clpB [H]
Identifier: 91783718
GI number: 91783718
Start: 2612313
End: 2615063
Strand: Direct
Name: clpB [H]
Synonym: Bxe_A2096
Alternate gene names: 91783718
Gene position: 2612313-2615063 (Clockwise)
Preceding gene: 91783715
Following gene: 91783719
Centisome position: 53.36
GC content: 66.23
Gene sequence:
>2751_bases ATGGCGATTTCACGTCAGGCGCTTTTCGGCAAGCTTGGAACCACGCTGTACAGAAGCATCGAGTCCGCCACGGCCTTTTG CAAGCTGCGCGGCAACCCTTATATCGAGCTCGTGCACTGGCTGCATCAGTTGCTGCAACAACCCGACTCGGACCTGCATC GGCTCGTGCGGCATTGCGGTATCGAGCGCGAAACACTGGATCGCGATATGGCCCGCGCGCTGGCCGCGCTGCCGGCAGGC GCCAGTTCGATCAGCGATTTCTCGCATCACGTGGAACTGGCCGTCGAGCGGGCCTGGGTGCTCGCCACGCTCAGCTTCAA TGACCGGCGTATCCGCAGCGCCTGGCTCGTCGCCGCACTCGTGCAGACGCCGGAATTGCGCCGCGTGCTGCTTTCCATCT CGCCGGCGTTCGGCAAGCTATCTGTCGTGGGTCTGGACGAAGCGCTGCCGGCCTATATGGAGAATTCGCCCGAAGCCGCC GAGGCGCCCTACGACAACAGCAATTTTTCAACCGCGGTGCCGGGCGAGGCTTCTCACGCCCTTCCCGCGCAATCGAAAGG GTCGCCGCTCGAACAGTTCTGCACCGACCTCACCGTGCGTGCGCACAGCGGCGAAATCGATCCGGTGGTCGGCCGCGAAC TGGAAATTCGCACCATGATCGACGTGCTGCTGCGCCGGCGCCAGAACAATCCGTTGCTGACCGGCGAGGCCGGCGTCGGC AAGACCGCGGTCGTCGAAGGGCTCGCCTGCGCGATCGCCACCGGCAACGTGCCGCCCAGGCTGGTGGGCGTGCGCCTCCT GAGCCTCGACGTGGGCGCGCTGCTCGCCGGCGCCAGCATGAAGGGCGAATTCGAGTTGCGTTTGAGAGGCGTGCTGGAAG CCGCGCTGAAGTCGGCCGTACCGGTGATCCTGTTCGTCGACGAAATCCATACGCTGATCGGCGCGGGCGGCCAGGCCGGC ACGGGCGACGCGGCCAATCTGCTGAAACCCGCGCTCGCGCGCGGCGCGATCCGCATGATCGGCGCGACCACCTGGGCGGA ATACAAACGGCACATCGAAAAAGACGCGGCGCTCACGCGGCGCTTCCAGGTCCTGCAGGTGCGGCAGCCGCAGGAACCGG CGGCGATCGACATGGTGCGCGGCCTCGCGAACACGTTCTCGCGGCATCACGGCGTTGTCGTGCGTGACCAGGCGATCCGC GCGGCGGTGAGGCTGTCGCATCGCTACATTCCCTCCCGCCAGTTGCCGGACAAGGCAATCAGTCTTCTCGACACGGCGTG CGCGCGCGTCGCGCTTTCGCAGCATGCACCGCCGCGAGAATTGCAGGACGCGCGTCAACGCGTGCTGGCCGCGCGCGTCG AAAGCGAGTTGCTCGTCGCGGAATCGCGTATCGGGCTCGATACCGCGAGCGCATTGGCGGCGGCCCGAACGCGCATCGGC GAACTGGTCGCTGTCGAAGAGCGCATCGAAGCGCGCTGGAAAGCACAACTCGCGGCGGCGCAAGCCTTGCTCGCCGCCCG TGATGCGGCGCTCGGGGCCGATCACGGCGCGCCGCACACCGGCGCGAACAGTGACGCATGCGCGTCGCCCGATTCGCTCA AGGATCTGGAGCGCGCCCTCACGCAATTGCAGGGCGATGCGCCGCTGGTGTTTCCCGAGGTGAGCGAAGCAATCGTCGCC GAAGTGGTATCGGATTGGACCGGCATTCCCGTGGGCCGCATGGTCACCGACGAAGTGGCCGCCGTGCAATCACTGCCCGC CACGCTCGAAGCCCGCGTGATCGGCCAGCCCGATGCATTGCGTCAGATCGGCGAGCGGGTGCAAACCGCACGCGCCGGGC TCACGGATCCGAAGAAGCCGCTCGGCGTATTCCTGCTCGCGGGCCCTTCCGGTGTGGGCAAGACCGAGACGGCGCTCGCC CTCGCGGAGGCGCTCTACGGCGGCGAGCAGAACCTGATCACCGTCAATATGAGCGAGTACCAGGAGGCGCACACGGTCTC CGGACTGAAAGGCGCCCCGCCCGGCTATGTCGGCTACGGCGAAGGCGGTGTGCTCACGGAAGCCGTGCGGCGGCGCCCCT ATTCCGTGGTGCTGCTCGACGAAATCGAGAAAGCCCATCGCGACGTGCACGAAATGTTCTTCCAGGTGTTCGACAAAGGC TATATGGAAGACGGCGACGGCCGCTATATCGATTTCCGCAACACCACGATCCTGCTCACGAGCAACGCCGGCTCGGAGCT GATCGCGAGCCTGTGCGCGGACGCGCCGCTCCCGCCCGATGCCGAAGGTCTGCGCGAAGCTCTCACGCCCGCGTTGCTCA ACGCATTTCCCGCGGCGTTTCTCGGCCGCGTCACCGTGGTGCCGTACCGGCCGCTCGCGCATGAATCGCTTGCGCGCATC GTGCGGCTGCATCTGGACCGCGTCGTCACTCGCATGGCGCAGGTTCACGACATTGCGCTTGCCTACAGCGGGCAAGTGGT CGACTACATCGTTGGCAGATGCCTGGTTCAGGAAACCGGAGCCCGCGTGCTGATTGGCTTTATCGAACAACACGTGCTGC CGCGCCTTTCCGCGTTATGGCTCGACGCGTTGGCGTCGAAACAGCCCATCACGCGTATTGAAATCGGCGTGGTCGACGCC AGCGCGCCACCCACTGCCGCTCTCGCTTTCCCCTGCACGTATGCGCATGCCCCGGCAATGCCGGCAGCAGCCGCAACGCC GTCCACCCTTTCCGTCGCGCAGGTTGACTGA
Upstream 100 bases:
>100_bases TATAAGACTTATTCCTGACCGGGTTTCGCGCAAATCAGCAATTACATTGCCCGCGCCGGTTGAAAGTAAAAAACCAAAAA CAACGAATCAGAGAAACCAC
Downstream 100 bases:
>100_bases ACGCTGCCGACTCTTCACCACCCGTTCACGGAGACCTCCATGTCCGTTCCCAGCAGTTCGCAGAAATTCATCGCGCTCAA TCGGGCGCCACGTGTGCAGA
Product: putative ClpA/B-type chaperone, ATPase subunit ClpB, heat shock protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 916; Mature: 915
Protein sequence:
>916_residues MAISRQALFGKLGTTLYRSIESATAFCKLRGNPYIELVHWLHQLLQQPDSDLHRLVRHCGIERETLDRDMARALAALPAG ASSISDFSHHVELAVERAWVLATLSFNDRRIRSAWLVAALVQTPELRRVLLSISPAFGKLSVVGLDEALPAYMENSPEAA EAPYDNSNFSTAVPGEASHALPAQSKGSPLEQFCTDLTVRAHSGEIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVG KTAVVEGLACAIATGNVPPRLVGVRLLSLDVGALLAGASMKGEFELRLRGVLEAALKSAVPVILFVDEIHTLIGAGGQAG TGDAANLLKPALARGAIRMIGATTWAEYKRHIEKDAALTRRFQVLQVRQPQEPAAIDMVRGLANTFSRHHGVVVRDQAIR AAVRLSHRYIPSRQLPDKAISLLDTACARVALSQHAPPRELQDARQRVLAARVESELLVAESRIGLDTASALAAARTRIG ELVAVEERIEARWKAQLAAAQALLAARDAALGADHGAPHTGANSDACASPDSLKDLERALTQLQGDAPLVFPEVSEAIVA EVVSDWTGIPVGRMVTDEVAAVQSLPATLEARVIGQPDALRQIGERVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA LAEALYGGEQNLITVNMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEMFFQVFDKG YMEDGDGRYIDFRNTTILLTSNAGSELIASLCADAPLPPDAEGLREALTPALLNAFPAAFLGRVTVVPYRPLAHESLARI VRLHLDRVVTRMAQVHDIALAYSGQVVDYIVGRCLVQETGARVLIGFIEQHVLPRLSALWLDALASKQPITRIEIGVVDA SAPPTAALAFPCTYAHAPAMPAAAATPSTLSVAQVD
Sequences:
>Translated_916_residues MAISRQALFGKLGTTLYRSIESATAFCKLRGNPYIELVHWLHQLLQQPDSDLHRLVRHCGIERETLDRDMARALAALPAG ASSISDFSHHVELAVERAWVLATLSFNDRRIRSAWLVAALVQTPELRRVLLSISPAFGKLSVVGLDEALPAYMENSPEAA EAPYDNSNFSTAVPGEASHALPAQSKGSPLEQFCTDLTVRAHSGEIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVG KTAVVEGLACAIATGNVPPRLVGVRLLSLDVGALLAGASMKGEFELRLRGVLEAALKSAVPVILFVDEIHTLIGAGGQAG TGDAANLLKPALARGAIRMIGATTWAEYKRHIEKDAALTRRFQVLQVRQPQEPAAIDMVRGLANTFSRHHGVVVRDQAIR AAVRLSHRYIPSRQLPDKAISLLDTACARVALSQHAPPRELQDARQRVLAARVESELLVAESRIGLDTASALAAARTRIG ELVAVEERIEARWKAQLAAAQALLAARDAALGADHGAPHTGANSDACASPDSLKDLERALTQLQGDAPLVFPEVSEAIVA EVVSDWTGIPVGRMVTDEVAAVQSLPATLEARVIGQPDALRQIGERVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA LAEALYGGEQNLITVNMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEMFFQVFDKG YMEDGDGRYIDFRNTTILLTSNAGSELIASLCADAPLPPDAEGLREALTPALLNAFPAAFLGRVTVVPYRPLAHESLARI VRLHLDRVVTRMAQVHDIALAYSGQVVDYIVGRCLVQETGARVLIGFIEQHVLPRLSALWLDALASKQPITRIEIGVVDA SAPPTAALAFPCTYAHAPAMPAAAATPSTLSVAQVD >Mature_915_residues AISRQALFGKLGTTLYRSIESATAFCKLRGNPYIELVHWLHQLLQQPDSDLHRLVRHCGIERETLDRDMARALAALPAGA SSISDFSHHVELAVERAWVLATLSFNDRRIRSAWLVAALVQTPELRRVLLSISPAFGKLSVVGLDEALPAYMENSPEAAE APYDNSNFSTAVPGEASHALPAQSKGSPLEQFCTDLTVRAHSGEIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVGK TAVVEGLACAIATGNVPPRLVGVRLLSLDVGALLAGASMKGEFELRLRGVLEAALKSAVPVILFVDEIHTLIGAGGQAGT GDAANLLKPALARGAIRMIGATTWAEYKRHIEKDAALTRRFQVLQVRQPQEPAAIDMVRGLANTFSRHHGVVVRDQAIRA AVRLSHRYIPSRQLPDKAISLLDTACARVALSQHAPPRELQDARQRVLAARVESELLVAESRIGLDTASALAAARTRIGE LVAVEERIEARWKAQLAAAQALLAARDAALGADHGAPHTGANSDACASPDSLKDLERALTQLQGDAPLVFPEVSEAIVAE VVSDWTGIPVGRMVTDEVAAVQSLPATLEARVIGQPDALRQIGERVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALAL AEALYGGEQNLITVNMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEMFFQVFDKGY MEDGDGRYIDFRNTTILLTSNAGSELIASLCADAPLPPDAEGLREALTPALLNAFPAAFLGRVTVVPYRPLAHESLARIV RLHLDRVVTRMAQVHDIALAYSGQVVDYIVGRCLVQETGARVLIGFIEQHVLPRLSALWLDALASKQPITRIEIGVVDAS APPTAALAFPCTYAHAPAMPAAAATPSTLSVAQVD
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=342, Percent_Identity=30.9941520467836, Blast_Score=157, Evalue=5e-38, Organism=Escherichia coli, GI1788943, Length=804, Percent_Identity=40.0497512437811, Blast_Score=521, Evalue=1e-148, Organism=Escherichia coli, GI1787109, Length=244, Percent_Identity=48.3606557377049, Blast_Score=231, Evalue=2e-61, Organism=Saccharomyces cerevisiae, GI6320464, Length=696, Percent_Identity=38.6494252873563, Blast_Score=447, Evalue=1e-126, Organism=Saccharomyces cerevisiae, GI6323002, Length=690, Percent_Identity=35.9420289855072, Blast_Score=414, Evalue=1e-116,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR017729 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 98167; Mature: 98035
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00870 CLPAB_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISRQALFGKLGTTLYRSIESATAFCKLRGNPYIELVHWLHQLLQQPDSDLHRLVRHCG CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC IERETLDRDMARALAALPAGASSISDFSHHVELAVERAWVLATLSFNDRRIRSAWLVAAL CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHH VQTPELRRVLLSISPAFGKLSVVGLDEALPAYMENSPEAAEAPYDNSNFSTAVPGEASHA HCCHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC LPAQSKGSPLEQFCTDLTVRAHSGEIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVG CCCCCCCCCHHHHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC KTAVVEGLACAIATGNVPPRLVGVRLLSLDVGALLAGASMKGEFELRLRGVLEAALKSAV HHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC PVILFVDEIHTLIGAGGQAGTGDAANLLKPALARGAIRMIGATTWAEYKRHIEKDAALTR CEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFQVLQVRQPQEPAAIDMVRGLANTFSRHHGVVVRDQAIRAAVRLSHRYIPSRQLPDKAI HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHH SLLDTACARVALSQHAPPRELQDARQRVLAARVESELLVAESRIGLDTASALAAARTRIG HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ELVAVEERIEARWKAQLAAAQALLAARDAALGADHGAPHTGANSDACASPDSLKDLERAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH TQLQGDAPLVFPEVSEAIVAEVVSDWTGIPVGRMVTDEVAAVQSLPATLEARVIGQPDAL HHHCCCCCEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHEEECCCCHHH RQIGERVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNLITVNMSEY HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHH QEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEMFFQVFDKG HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC YMEDGDGRYIDFRNTTILLTSNAGSELIASLCADAPLPPDAEGLREALTPALLNAFPAAF CCCCCCCCEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LGRVTVVPYRPLAHESLARIVRLHLDRVVTRMAQVHDIALAYSGQVVDYIVGRCLVQETG HCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC ARVLIGFIEQHVLPRLSALWLDALASKQPITRIEIGVVDASAPPTAALAFPCTYAHAPAM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEECCCHHCCCCCC PAAAATPSTLSVAQVD CCCCCCCCCCEEEECC >Mature Secondary Structure AISRQALFGKLGTTLYRSIESATAFCKLRGNPYIELVHWLHQLLQQPDSDLHRLVRHCG CCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC IERETLDRDMARALAALPAGASSISDFSHHVELAVERAWVLATLSFNDRRIRSAWLVAAL CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHH VQTPELRRVLLSISPAFGKLSVVGLDEALPAYMENSPEAAEAPYDNSNFSTAVPGEASHA HCCHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC LPAQSKGSPLEQFCTDLTVRAHSGEIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVG CCCCCCCCCHHHHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC KTAVVEGLACAIATGNVPPRLVGVRLLSLDVGALLAGASMKGEFELRLRGVLEAALKSAV HHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC PVILFVDEIHTLIGAGGQAGTGDAANLLKPALARGAIRMIGATTWAEYKRHIEKDAALTR CEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFQVLQVRQPQEPAAIDMVRGLANTFSRHHGVVVRDQAIRAAVRLSHRYIPSRQLPDKAI HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHH SLLDTACARVALSQHAPPRELQDARQRVLAARVESELLVAESRIGLDTASALAAARTRIG HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ELVAVEERIEARWKAQLAAAQALLAARDAALGADHGAPHTGANSDACASPDSLKDLERAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH TQLQGDAPLVFPEVSEAIVAEVVSDWTGIPVGRMVTDEVAAVQSLPATLEARVIGQPDAL HHHCCCCCEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHEEECCCCHHH RQIGERVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNLITVNMSEY HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHH QEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEMFFQVFDKG HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC YMEDGDGRYIDFRNTTILLTSNAGSELIASLCADAPLPPDAEGLREALTPALLNAFPAAF CCCCCCCCEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LGRVTVVPYRPLAHESLARIVRLHLDRVVTRMAQVHDIALAYSGQVVDYIVGRCLVQETG HCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC ARVLIGFIEQHVLPRLSALWLDALASKQPITRIEIGVVDASAPPTAALAFPCTYAHAPAM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEECCCHHCCCCCC PAAAATPSTLSVAQVD CCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10986262 [H]