BacMap

Definition	Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession	NC_007951
Length	4,895,836

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The map label for this gene is ygfF [C]

Identifier: 91783700

GI number: 91783700

Start: 2594786

End: 2595532

Strand: Reverse

Name: ygfF [C]

Synonym: Bxe_A2114

Alternate gene names: 91783700

Gene position: 2595532-2594786 (Counterclockwise)

Preceding gene: 91783701

Following gene: 91783698

Centisome position: 53.02

GC content: 63.99

Gene sequence:

>747_bases
ATGAGCAAGCTCACAGGCAAAGTTGCAGTTGTAACGGGCGCATCGAAAGGTATCGGCGCGGCTATCGCCAAGGCATTGGC
TGCGCAGGGCGCCTCCGTGGTGGTGAACTATTCGTCGAGCAGGACGGGTGCGGACAGCGTGGTCGCCGCGATTACCGCCG
CGGGCGGCAAGGCGGTGGCCGTGGCGGGCGACGTCTCCAAAGCGGCAGACGCGCAGGGCATCATCGATACTGCCGTGGAA
ACGTATGGCCGTCTCGACATTCTCGTCAACAACTCGGGCGTGTATGAATTCGCACCGATCGAAGAAATCACCGAAGAGCA
CTTCCACAGGCACTTCAACGTGAATGTGCTCGGTTTGCTGCTGACCACGCAGGCTGCGGTCAAGCATCTCGGCGAAGGCG
CGAGCATCGTCAATATCAGCTCGGTGGTGAGCCGCATCACGCCGCCGGGCAGCGCGGTCTATACCGCCACCAAGGGCGCG
GTGGACGGCATTACGGGTGTGCTCGCACGCGAACTCGGCCCGCGCAAGATCCGCGTCAACTCGGTGAATCCGGGCATGGT
GGCCACGGAAGGCACGCATACCGCGGGCATTCTCGGTTCCGACTTCGAAACGTGGGCCGTCAGCACGACGCCGCTCGGCC
GTATCGGCCAGCCCGACGATATCGCCGATGTGGTCGCCTTCCTCGCGTCCGACGACGCGCGCTGGCTGACGGGCGAAAGC
CTGATCGCGAGCGGTGGCTCGCGTTAA

Upstream 100 bases:

>100_bases
CTGCCTACATTGTCACCAGTGACAGCGCTACTGGATTTCCAACGCAGCCCGCGAATCTTCGCAGCAGCATCGGCGCAAAT
CCCATTTAAAGGAATCGATC

Downstream 100 bases:

>100_bases
GCGGTTCTGCGCGAAGGCGCGTGGCGCAGCGCGATAGCGTCACGCCTCATCGTGCGGCATGAAGAAAAGCCGCCCGCAGG
CTGCGCCTGCCGGGCGGCTG

Product: putative short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSKLTGKVAVVTGASKGIGAAIAKALAAQGASVVVNYSSSRTGADSVVAAITAAGGKAVAVAGDVSKAADAQGIIDTAVE
TYGRLDILVNNSGVYEFAPIEEITEEHFHRHFNVNVLGLLLTTQAAVKHLGEGASIVNISSVVSRITPPGSAVYTATKGA
VDGITGVLARELGPRKIRVNSVNPGMVATEGTHTAGILGSDFETWAVSTTPLGRIGQPDDIADVVAFLASDDARWLTGES
LIASGGSR

Sequences:

>Translated_248_residues
MSKLTGKVAVVTGASKGIGAAIAKALAAQGASVVVNYSSSRTGADSVVAAITAAGGKAVAVAGDVSKAADAQGIIDTAVE
TYGRLDILVNNSGVYEFAPIEEITEEHFHRHFNVNVLGLLLTTQAAVKHLGEGASIVNISSVVSRITPPGSAVYTATKGA
VDGITGVLARELGPRKIRVNSVNPGMVATEGTHTAGILGSDFETWAVSTTPLGRIGQPDDIADVVAFLASDDARWLTGES
LIASGGSR
>Mature_247_residues
SKLTGKVAVVTGASKGIGAAIAKALAAQGASVVVNYSSSRTGADSVVAAITAAGGKAVAVAGDVSKAADAQGIIDTAVET
YGRLDILVNNSGVYEFAPIEEITEEHFHRHFNVNVLGLLLTTQAAVKHLGEGASIVNISSVVSRITPPGSAVYTATKGAV
DGITGVLARELGPRKIRVNSVNPGMVATEGTHTAGILGSDFETWAVSTTPLGRIGQPDDIADVVAFLASDDARWLTGESL
IASGGSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=37.246963562753, Blast_Score=148, Evalue=5e-36,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=35.546875, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=33.4661354581673, Blast_Score=124, Evalue=6e-29,
Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=36.4705882352941, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=34.156378600823, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=34, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=29.2, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=37.1584699453552, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI59889578, Length=220, Percent_Identity=31.8181818181818, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=31.2252964426877, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.0697674418605, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=34.7368421052632, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=30.2788844621514, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=32.994923857868, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=31.7708333333333, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=30.859375, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI83715985, Length=260, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI4503301, Length=247, Percent_Identity=25.9109311740891, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=32.7485380116959, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI32455239, Length=178, Percent_Identity=31.4606741573034, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI5031765, Length=178, Percent_Identity=31.4606741573034, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=36.697247706422, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40254986, Length=146, Percent_Identity=30.1369863013699, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=38.7096774193548, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=34.156378600823, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=34.5528455284553, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=32.9411764705882, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=32.9317269076305, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=33.8709677419355, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=32.9268292682927, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=29.4354838709677, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=33.4728033472803, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=29.3877551020408, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=29.5719844357977, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788891, Length=208, Percent_Identity=32.6923076923077, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=27.6264591439689, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=29.4820717131474, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786701, Length=209, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=24.7104247104247, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=37.4501992031873, Blast_Score=144, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=35.2226720647773, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=35.1778656126482, Blast_Score=123, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=31.8181818181818, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=32.3308270676692, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=34.0080971659919, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=34.251968503937, Blast_Score=114, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=33.6032388663968, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=33.7254901960784, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=30.9701492537313, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=33.5849056603774, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=32.183908045977, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=30.7984790874525, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=34.0823970037453, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=31.0606060606061, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI72000259, Length=278, Percent_Identity=32.3741007194245, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=31.3432835820896, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=31.1787072243346, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=32.3420074349442, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=32.4427480916031, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=30.4511278195489, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.9433962264151, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=31.9548872180451, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=31.5789473684211, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=31.0606060606061, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=35.4166666666667, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=29.8804780876494, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=27.906976744186, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=26.5873015873016, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=32.9842931937173, Blast_Score=82, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=248, Percent_Identity=27.0161290322581, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=30.4, Blast_Score=75, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=189, Percent_Identity=26.984126984127, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=40.234375, Blast_Score=152, Evalue=2e-37,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=39.1304347826087, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=36.6935483870968, Blast_Score=142, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=37.2, Blast_Score=137, Evalue=7e-33,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=35.5731225296443, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=34.9397590361446, Blast_Score=127, Evalue=5e-30,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=33.2, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=34, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=30.078125, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI18859837, Length=241, Percent_Identity=31.5352697095436, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281364892, Length=196, Percent_Identity=30.6122448979592, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=31.3725490196078, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24656154, Length=275, Percent_Identity=28.3636363636364, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI19922628, Length=275, Percent_Identity=28.3636363636364, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI116007234, Length=235, Percent_Identity=30.6382978723404, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=29.5566502463054, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357673, Length=255, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640492, Length=195, Percent_Identity=26.1538461538462, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=26.9607843137255, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648693, Length=243, Percent_Identity=30.0411522633745, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=243, Percent_Identity=30.0411522633745, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641388, Length=246, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25094; Mature: 24962

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLTGKVAVVTGASKGIGAAIAKALAAQGASVVVNYSSSRTGADSVVAAITAAGGKAVA
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEE
VAGDVSKAADAQGIIDTAVETYGRLDILVNNSGVYEFAPIEEITEEHFHRHFNVNVLGLL
EECCCHHHHCCCHHHHHHHHHCCCEEEEECCCCCEEECCHHHHHHHHHHHHCCCEEEEHH
LTTQAAVKHLGEGASIVNISSVVSRITPPGSAVYTATKGAVDGITGVLARELGPRKIRVN
HHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE
SVNPGMVATEGTHTAGILGSDFETWAVSTTPLGRIGQPDDIADVVAFLASDDARWLTGES
CCCCCEEEECCCCEECEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEECCH
LIASGGSR
HCCCCCCC
>Mature Secondary Structure 
SKLTGKVAVVTGASKGIGAAIAKALAAQGASVVVNYSSSRTGADSVVAAITAAGGKAVA
CCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEE
VAGDVSKAADAQGIIDTAVETYGRLDILVNNSGVYEFAPIEEITEEHFHRHFNVNVLGLL
EECCCHHHHCCCHHHHHHHHHCCCEEEEECCCCCEEECCHHHHHHHHHHHHCCCEEEEHH
LTTQAAVKHLGEGASIVNISSVVSRITPPGSAVYTATKGAVDGITGVLARELGPRKIRVN
HHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEE
SVNPGMVATEGTHTAGILGSDFETWAVSTTPLGRIGQPDDIADVVAFLASDDARWLTGES
CCCCCEEEECCCCEECEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEECCH
LIASGGSR
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]