| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
Click here to switch to the map view.
The map label for this gene is speE [H]
Identifier: 91783683
GI number: 91783683
Start: 2565650
End: 2568142
Strand: Direct
Name: speE [H]
Synonym: Bxe_A2131
Alternate gene names: 91783683
Gene position: 2565650-2568142 (Clockwise)
Preceding gene: 91783682
Following gene: 91783685
Centisome position: 52.4
GC content: 67.27
Gene sequence:
>2493_bases ATGCTCCTGCTGTTTGCATCGGGCGCGGCGTCACTGATTTACCAGGTGCTGTGGATCAAACAATTAGCGCTCGTCGTGGG TGTGGACGTACAGGCGGTCACGACGGGCGTCAGCGCCTTTTTCGCAGGTCTCGCGCTGGGTGGCTGGCTGCTCGGCAGGC TGGCCGATCGCCTCTCGCGGCCGTTGCTGCTTTACGCCGCACTGGAAAGCGGCGCGATGGTGCTGGCCGTGGCCGGCACC ATCGCGCTGGCGCACGCGGCCGCGCCGTTCGCATGGCTGCAGGATCGCACGGGGCCGCTTGCGTGGGTGTTGCCGTTCGC ACTGGTCGGCCTGCCCGCCGTGCTGATGGGCGGCACGCTGCCGGTGCTGATGCGCGCGTTGGGCCCGCGTGCGACACGCC TGGGCCGCGCCGGCGCACGCTTGTATGCGGCCAATACGGGTGGCGCGATCGCCGGTACGCTCGCTGCCGCCTTCATACTG ATTCCGTTACTCGGCGTACAAGGCAGCGCGTTTGCCGCGGCCGGGTTGAACGCGCTCGCCGCGCTGAGCGCGCTGCTCAT TAGCCATTTCACTTCCGATCGCGATCCCGCCGTTATACCGCCACTCGAAACGCCGCCACTCGAAACACCCTCTCCAGCCG GAACAACTTCCGACCATGCCACGCCCGGCGCTCGCCTCGTCGTCGCTCTCTATGCGCTAGCCGGTGGCATCGCGCTGGGT TACGAGGTGGTGTGGTCGCAACTGATCGTCCAGTTCATCAGCACCCGCAGCTTCGCGTTCGCGATCGTGCTCGCCACGTA TCTGCTCGGGCTCACACTCGGCAGCGCGCTCAGCTCGCGCCGTGTCGATCGCGCGCGCGATCCGTGGGGTGTGTTCGCGC TGCTGATCGTAGCGGCCGGACTTGTCGCGTTGCTGCAAGTCGCCGCGTTGGGTGGCTGGCTGCTTCAATGGCAAAGCCTT GCGCGCGAGGCGACGTTCTCCGCCACTGGCAGCCTGCTCGCCGCGATGTGCGCGGGCTTTGCGGTCGCGGCCGCGTGCAT CGTATTCGTGCCCACGCTATTGCTGGGTGCGGCGTTCCCATTCGCGCTGCGCGTGAGCGTGGATGCGCGGCATACAGGCC GCGATGTCGGCGCCGTAGTGGCGCTCAATACCGCGGGCGGTATCGCCGGCACGCTGCTCGCCGGCTTCCTGCTGGTTCCA GCCCTCGGGCTGGTGCATGCGCTAGCCGTGCTCGCCGTCCTGGCCGGCGCGGTGGGCGTTGTCGCCGTGTGGCGAGGTCA TGGCGTGCGGCGCGGCACTCGCTGGAGCGTCCCGGTGCTTGCTATGGCAACCCTGTGCGCCGTGCTGCTGACACCGTCGG ACCGTTTCGCCACCCTGCTCGCCGCGGCACGCGGCGGCACGCTGCTCTCCTACGAGGAAAGCGCGGGCGGCACCGTGGCC GTCGTTACCCAAGGCGCGGGCGACAAACAGTTCCGGCGTCTCTACATTCAGGGAGTCTCCAACTCCGGCGACGCGATGAC CTCGCTGCGCTATATGCGTCTGCAGGCATTGCTGCCACTGCTGGTTCACCGCGACACGCCGCGCAGCGCGCTTGTAATCG GACTCGGTACGGGCATCACGGGCGGTGCGCTGCTCACGTGGCCCGGCCTCGACAAGCGCGTGGTCGCCGAGTTGTTGCCG GCGGTCGTGCACGCCGCGCCGCAGTTCAAAGGCAACTACGGCATCAACGCCGACCCGCGTGTCGATATCCGCCTGCGCGA CGGGCGGCGCGAACTGCTGCGCAGCAGCGAACGATATGACCTGATCACACTCGAGCCGCCGCCCCCCTCGGCAGCCGGCG TGGTCAATCTCTACTCGTCGGACTTCTACCGATTGGCGGCCTCGCGTCTGAGCACGAATGGCGTTGTTGCGCAATGGCTG CCGCTACCCACCCAGAACGAAGACGACACGCGTTCGCTGATCCAGAGCTTCATCCAGGTGTTTCCGTATGCCGCGCTATG GACCACCGAGTTGCACGAGATGATGCTGATCGGTTCAATGCAGCCAATCGAACTGGATGTGCCGCGTATCGAGTCGCGCT TTGCGCAACCGCAGGTGGCGGCGGCACTGCGCGAGGTGGGCGTGGCCTCGCCGGCAGCACTGCTGGCGACCTGGATCACC GATCGCGCAGGACTCGCTTATTACACCGCAGATGCCCCGCCGGTAACCGACGACAGGCCACGCATCGAATACGCGGCGTG GGTGCGCCGCGACGGTTTCCCGGACACGCTCACGCACCTGCTAGCGCTTCGCGGCGAGCCGCCATTGCTGCACGCCGACA GGGCATTCCGCGCGGCCCTGGACGCCGAGCGCGGCGCGCTGCAAAGTTTCTATGCAGCGGGCCTGGACGCGTACCGCGGC GAGCGTGATACGTGGTCTCGCGACATTGGCGATGCATTGCAGGCACAGCCGGATAATCCCTACTTCCGCTGGTTCGTCGG CAACGAACCGTAG
Upstream 100 bases:
>100_bases ACGTCAGGCCGATCCGCGCGAAAGCGGACGCGAACGCGAACGCGGCCCGCACGAGCCGGATGGGACCTCTGCTGAACCGT CTCTGTCCGTTGCCTGGCCA
Downstream 100 bases:
>100_bases CGGTGGATAAGTGCGCTTCGCGCGCGCGTCCGCCAATCGACATTCAACGGGTATTCAACGCCGGACATAACGGAGCAGAA CAGCAGAACAACGGGCGACA
Product: spermine/spermidine synthase family transmembrane protein
Products: NA
Alternate protein names: Putrescine aminopropyltransferase; PAPT; SPDSY [H]
Number of amino acids: Translated: 830; Mature: 830
Protein sequence:
>830_residues MLLLFASGAASLIYQVLWIKQLALVVGVDVQAVTTGVSAFFAGLALGGWLLGRLADRLSRPLLLYAALESGAMVLAVAGT IALAHAAAPFAWLQDRTGPLAWVLPFALVGLPAVLMGGTLPVLMRALGPRATRLGRAGARLYAANTGGAIAGTLAAAFIL IPLLGVQGSAFAAAGLNALAALSALLISHFTSDRDPAVIPPLETPPLETPSPAGTTSDHATPGARLVVALYALAGGIALG YEVVWSQLIVQFISTRSFAFAIVLATYLLGLTLGSALSSRRVDRARDPWGVFALLIVAAGLVALLQVAALGGWLLQWQSL AREATFSATGSLLAAMCAGFAVAAACIVFVPTLLLGAAFPFALRVSVDARHTGRDVGAVVALNTAGGIAGTLLAGFLLVP ALGLVHALAVLAVLAGAVGVVAVWRGHGVRRGTRWSVPVLAMATLCAVLLTPSDRFATLLAAARGGTLLSYEESAGGTVA VVTQGAGDKQFRRLYIQGVSNSGDAMTSLRYMRLQALLPLLVHRDTPRSALVIGLGTGITGGALLTWPGLDKRVVAELLP AVVHAAPQFKGNYGINADPRVDIRLRDGRRELLRSSERYDLITLEPPPPSAAGVVNLYSSDFYRLAASRLSTNGVVAQWL PLPTQNEDDTRSLIQSFIQVFPYAALWTTELHEMMLIGSMQPIELDVPRIESRFAQPQVAAALREVGVASPAALLATWIT DRAGLAYYTADAPPVTDDRPRIEYAAWVRRDGFPDTLTHLLALRGEPPLLHADRAFRAALDAERGALQSFYAAGLDAYRG ERDTWSRDIGDALQAQPDNPYFRWFVGNEP
Sequences:
>Translated_830_residues MLLLFASGAASLIYQVLWIKQLALVVGVDVQAVTTGVSAFFAGLALGGWLLGRLADRLSRPLLLYAALESGAMVLAVAGT IALAHAAAPFAWLQDRTGPLAWVLPFALVGLPAVLMGGTLPVLMRALGPRATRLGRAGARLYAANTGGAIAGTLAAAFIL IPLLGVQGSAFAAAGLNALAALSALLISHFTSDRDPAVIPPLETPPLETPSPAGTTSDHATPGARLVVALYALAGGIALG YEVVWSQLIVQFISTRSFAFAIVLATYLLGLTLGSALSSRRVDRARDPWGVFALLIVAAGLVALLQVAALGGWLLQWQSL AREATFSATGSLLAAMCAGFAVAAACIVFVPTLLLGAAFPFALRVSVDARHTGRDVGAVVALNTAGGIAGTLLAGFLLVP ALGLVHALAVLAVLAGAVGVVAVWRGHGVRRGTRWSVPVLAMATLCAVLLTPSDRFATLLAAARGGTLLSYEESAGGTVA VVTQGAGDKQFRRLYIQGVSNSGDAMTSLRYMRLQALLPLLVHRDTPRSALVIGLGTGITGGALLTWPGLDKRVVAELLP AVVHAAPQFKGNYGINADPRVDIRLRDGRRELLRSSERYDLITLEPPPPSAAGVVNLYSSDFYRLAASRLSTNGVVAQWL PLPTQNEDDTRSLIQSFIQVFPYAALWTTELHEMMLIGSMQPIELDVPRIESRFAQPQVAAALREVGVASPAALLATWIT DRAGLAYYTADAPPVTDDRPRIEYAAWVRRDGFPDTLTHLLALRGEPPLLHADRAFRAALDAERGALQSFYAAGLDAYRG ERDTWSRDIGDALQAQPDNPYFRWFVGNEP >Mature_830_residues MLLLFASGAASLIYQVLWIKQLALVVGVDVQAVTTGVSAFFAGLALGGWLLGRLADRLSRPLLLYAALESGAMVLAVAGT IALAHAAAPFAWLQDRTGPLAWVLPFALVGLPAVLMGGTLPVLMRALGPRATRLGRAGARLYAANTGGAIAGTLAAAFIL IPLLGVQGSAFAAAGLNALAALSALLISHFTSDRDPAVIPPLETPPLETPSPAGTTSDHATPGARLVVALYALAGGIALG YEVVWSQLIVQFISTRSFAFAIVLATYLLGLTLGSALSSRRVDRARDPWGVFALLIVAAGLVALLQVAALGGWLLQWQSL AREATFSATGSLLAAMCAGFAVAAACIVFVPTLLLGAAFPFALRVSVDARHTGRDVGAVVALNTAGGIAGTLLAGFLLVP ALGLVHALAVLAVLAGAVGVVAVWRGHGVRRGTRWSVPVLAMATLCAVLLTPSDRFATLLAAARGGTLLSYEESAGGTVA VVTQGAGDKQFRRLYIQGVSNSGDAMTSLRYMRLQALLPLLVHRDTPRSALVIGLGTGITGGALLTWPGLDKRVVAELLP AVVHAAPQFKGNYGINADPRVDIRLRDGRRELLRSSERYDLITLEPPPPSAAGVVNLYSSDFYRLAASRLSTNGVVAQWL PLPTQNEDDTRSLIQSFIQVFPYAALWTTELHEMMLIGSMQPIELDVPRIESRFAQPQVAAALREVGVASPAALLATWIT DRAGLAYYTADAPPVTDDRPRIEYAAWVRRDGFPDTLTHLLALRGEPPLLHADRAFRAALDAERGALQSFYAAGLDAYRG ERDTWSRDIGDALQAQPDNPYFRWFVGNEP
Specific function: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the spermidine/spermine synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001045 [H]
Pfam domain/function: PF01564 Spermine_synth [H]
EC number: =2.5.1.16 [H]
Molecular weight: Translated: 87432; Mature: 87432
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLLFASGAASLIYQVLWIKQLALVVGVDVQAVTTGVSAFFAGLALGGWLLGRLADRLSR CEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PLLLYAALESGAMVLAVAGTIALAHAAAPFAWLQDRTGPLAWVLPFALVGLPAVLMGGTL CEEEEEECCCCCEEEEHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH PVLMRALGPRATRLGRAGARLYAANTGGAIAGTLAAAFILIPLLGVQGSAFAAAGLNALA HHHHHHHCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ALSALLISHFTSDRDPAVIPPLETPPLETPSPAGTTSDHATPGARLVVALYALAGGIALG HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH YEVVWSQLIVQFISTRSFAFAIVLATYLLGLTLGSALSSRRVDRARDPWGVFALLIVAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LVALLQVAALGGWLLQWQSLAREATFSATGSLLAAMCAGFAVAAACIVFVPTLLLGAAFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FALRVSVDARHTGRDVGAVVALNTAGGIAGTLLAGFLLVPALGLVHALAVLAVLAGAVGV EEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVWRGHGVRRGTRWSVPVLAMATLCAVLLTPSDRFATLLAAARGGTLLSYEESAGGTVA HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCEEE VVTQGAGDKQFRRLYIQGVSNSGDAMTSLRYMRLQALLPLLVHRDTPRSALVIGLGTGIT EEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC GGALLTWPGLDKRVVAELLPAVVHAAPQFKGNYGINADPRVDIRLRDGRRELLRSSERYD CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCE LITLEPPPPSAAGVVNLYSSDFYRLAASRLSTNGVVAQWLPLPTQNEDDTRSLIQSFIQV EEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH FPYAALWTTELHEMMLIGSMQPIELDVPRIESRFAQPQVAAALREVGVASPAALLATWIT HCCHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH DRAGLAYYTADAPPVTDDRPRIEYAAWVRRDGFPDTLTHLLALRGEPPLLHADRAFRAAL CCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCHHHHHHH DAERGALQSFYAAGLDAYRGERDTWSRDIGDALQAQPDNPYFRWFVGNEP HHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC >Mature Secondary Structure MLLLFASGAASLIYQVLWIKQLALVVGVDVQAVTTGVSAFFAGLALGGWLLGRLADRLSR CEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PLLLYAALESGAMVLAVAGTIALAHAAAPFAWLQDRTGPLAWVLPFALVGLPAVLMGGTL CEEEEEECCCCCEEEEHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH PVLMRALGPRATRLGRAGARLYAANTGGAIAGTLAAAFILIPLLGVQGSAFAAAGLNALA HHHHHHHCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ALSALLISHFTSDRDPAVIPPLETPPLETPSPAGTTSDHATPGARLVVALYALAGGIALG HHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH YEVVWSQLIVQFISTRSFAFAIVLATYLLGLTLGSALSSRRVDRARDPWGVFALLIVAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LVALLQVAALGGWLLQWQSLAREATFSATGSLLAAMCAGFAVAAACIVFVPTLLLGAAFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FALRVSVDARHTGRDVGAVVALNTAGGIAGTLLAGFLLVPALGLVHALAVLAVLAGAVGV EEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAVWRGHGVRRGTRWSVPVLAMATLCAVLLTPSDRFATLLAAARGGTLLSYEESAGGTVA HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCEEE VVTQGAGDKQFRRLYIQGVSNSGDAMTSLRYMRLQALLPLLVHRDTPRSALVIGLGTGIT EEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC GGALLTWPGLDKRVVAELLPAVVHAAPQFKGNYGINADPRVDIRLRDGRRELLRSSERYD CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCE LITLEPPPPSAAGVVNLYSSDFYRLAASRLSTNGVVAQWLPLPTQNEDDTRSLIQSFIQV EEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH FPYAALWTTELHEMMLIGSMQPIELDVPRIESRFAQPQVAAALREVGVASPAALLATWIT HCCHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH DRAGLAYYTADAPPVTDDRPRIEYAAWVRRDGFPDTLTHLLALRGEPPLLHADRAFRAAL CCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCHHHHHHH DAERGALQSFYAAGLDAYRGERDTWSRDIGDALQAQPDNPYFRWFVGNEP HHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12235376 [H]