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The map label for this gene is ybjD [C]

Identifier: 91783264

GI number: 91783264

Start: 2102514

End: 2104355

Strand: Direct

Name: ybjD [C]

Synonym: Bxe_A2561

Alternate gene names: 91783264

Gene position: 2102514-2104355 (Clockwise)

Preceding gene: 91783263

Following gene: 91783265

Centisome position: 42.94

GC content: 55.32

Gene sequence:

>1842_bases
ATGCGATTGAGTCGGATCGTTATCAAGAACTTCAGAAACTTCAAGCACTTCGATGTCCGGTTGGGTGAGCATGCCGTTGT
TCTCGGCGAGAACAAGGTCGGCAAGACCAATCTCCTGTTCGCGCTGCGACTGATCCTTGATCCCGCGCTTCCCGATTCAT
CGCGCAGACTGCGTATTGATGACTTCTGGGATGGACTGGCGCGCCCGCTGAAGGCGGAGGACGTCATCGAGGTGTCCGTC
GAATTTCGGGACTTCGAAAACAACGAGAATCTGCTTGCAGTATTGGCGGACCATTTGGTGCGGCCAGATCCGATGGTGGC
GCGCGTCACGTATCGCTATCAGCCGGTGCAGGGGCTCGAAGGAGCGCCGCGGAGCGAGGCGGACTATGAGTTCATTCTCT
TCGGTGGAGGTCGGATCGAAAACGCGATCGGTTATGAACTGAGGCGATGGATGCCGATGGATTTGTTCCCGGCCCTACGC
GACGCCGAGTCGGACCTCGCGCGCTGGTCGAGATCACCACTTCGACCGCTGTTGGACCGTGCAGCAAAGACGGTAGATGC
GAAAGCGCTCAGCGCGATCGCTGGCGAGGTCCATGCAACAACCTCGAAGATTGCGGCGCTCCCTGAGCTGTCCGATGTGG
TGAGTCAAGTCAACGATCAGCTCACTGTCATGGTTGGGGATAAGCACGCAGTTAAAACAGCCTTGGGGTTCGCACCGACC
GAACCGGAGCGCTTGCTGCGCGCATTACAAATGATGATCGATAGCGGAAAGCGCGGCGTGGCCGAGGCCAGCCTCGGTTC
CGCCAATGTGCTTTATCTTGCCCTGAAGCATCTTGAGCACCAGTACTTGGTAGATGAAGGGGAACGTCAACACACCTTCT
TAGCCATAGAAGAGCCTGAGGCTCATCTGCATCCGCACCTCCAACGGCTCATTTACCGAAACTACCTGCAGACGCGCGAC
GAGGTTCAGGCCGATACAGAGCCACGCAGCATTCTTCTCACAACGCACTCACCCAACGTAGCAAGTGTGGCGCCGCTCGC
CAACGTGGTTGTCCTACGCCATGTTGTCGATGCAGGACATACCGTTGGGCGTTCTCTCAAGGGAGTCAAGCTCAATACCA
GCGATCGCGAGGATCTGGAGCGCTACATTGACGTCACGCGCGGCGAGCTTTTTTTCTCGAAGGGTGTCATCCTGGTTGAG
GGCGATGCGGAGAAGTTCCTATTGCCCACGCTGGCCAAGCTGAATGACAAGGCTTTGGATTTCGATGCTATGGGTATCTC
CGTCTGTTCCATTGCTGGAACCAACTTTGCGCCCTATGTTCAATTGTTGGGCCAGAAAGGACTTGATATTCCGTTTGTGG
TGCTGACGGATTTCGATCCCAAGAATCAAGCGGTGAGCCAGGAGGACGCAGACCCTGACGACAATGGTGTGGGAAACAGC
TATGGCAAAAATCGTGTCGTTAATCAGATCATGCGTCATCTTCTGGACGAGGAAGTCTGGGACAAGAGCAGCTATGGAGA
GGTTCTCGAGCTCGCGCCGAAGCATGGCATCTTCCTGAACGAGTTCACGTTCGAGATTGATCTCTTTAAGGCGGGGGCTG
AGGATTATTTTCATACAGCGATCGGTTCGCTAACCACCAACAAGAAAATGCATGCGCGCTTTAAGGGCATGTCCGCAGAC
CCCGACTCGCTCGATCCCTCGCAGTTCCTCAAGGACATCGATTCCATCGGTAAAGGAAGAGTGGCACAGCGCCTTGCAGC
GGTCCTCGTGGAGGAGAGCGTCGATGTATGCCCAACGTACATAAAGAAGGCTCTGAAGTATTTGAAAGCCAAACTGGCAT
GA

Upstream 100 bases:

>100_bases
CAACCTGAGCTTCATGAAAGCTGCGCAGACAAAGGGCCTCATCAGCGTGCGCCCGATCTCCGATGTGGAAAAGAAGATCT
AAGGAATAAACAGGCTGCCC

Downstream 100 bases:

>100_bases
GTACCTCGACACCTCTCTATCTCAAAGCTGCGGAAGATTTGCGCGAGAATGAAGATCAATGGTGCGCCTACCAGGCGACG
GGGAACTGTGTCATTTTGGC

Product: ATP-dependent endonuclease

Products: NA

Alternate protein names: ATP-Dependent Endonuclease Of OLD Family; SMC Domain-Containing Protein; ATP-Dependent Endonuclease OLD Family; Overcoming Lysogenization Defect Protein; RecF/RecN/SMC N Domain Protein; ATP-Dependent Endonuclease; SMC Domain Protein; SMC Family Protein; SMC Protein-Like; Pathogenesis Related Protein; SMC Protein-Like Protein; Nucleoside Triphosphate Hydrolase Domain-Containing Protein; OLD Family-Like ATP-Dependent Endonuclease; P-Loop Containing Nucleoside Triphosphate Hydrolase Domain; P-Loop Containing Nucleoside Triphosphate Hydrolase; Smc Domain Protein; OLD Family Nuclease; Ypothetical Protein YbjD.; Fis Family Transcriptional Regulator; Endonuclease; Exonuclease

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MRLSRIVIKNFRNFKHFDVRLGEHAVVLGENKVGKTNLLFALRLILDPALPDSSRRLRIDDFWDGLARPLKAEDVIEVSV
EFRDFENNENLLAVLADHLVRPDPMVARVTYRYQPVQGLEGAPRSEADYEFILFGGGRIENAIGYELRRWMPMDLFPALR
DAESDLARWSRSPLRPLLDRAAKTVDAKALSAIAGEVHATTSKIAALPELSDVVSQVNDQLTVMVGDKHAVKTALGFAPT
EPERLLRALQMMIDSGKRGVAEASLGSANVLYLALKHLEHQYLVDEGERQHTFLAIEEPEAHLHPHLQRLIYRNYLQTRD
EVQADTEPRSILLTTHSPNVASVAPLANVVVLRHVVDAGHTVGRSLKGVKLNTSDREDLERYIDVTRGELFFSKGVILVE
GDAEKFLLPTLAKLNDKALDFDAMGISVCSIAGTNFAPYVQLLGQKGLDIPFVVLTDFDPKNQAVSQEDADPDDNGVGNS
YGKNRVVNQIMRHLLDEEVWDKSSYGEVLELAPKHGIFLNEFTFEIDLFKAGAEDYFHTAIGSLTTNKKMHARFKGMSAD
PDSLDPSQFLKDIDSIGKGRVAQRLAAVLVEESVDVCPTYIKKALKYLKAKLA

Sequences:

>Translated_613_residues
MRLSRIVIKNFRNFKHFDVRLGEHAVVLGENKVGKTNLLFALRLILDPALPDSSRRLRIDDFWDGLARPLKAEDVIEVSV
EFRDFENNENLLAVLADHLVRPDPMVARVTYRYQPVQGLEGAPRSEADYEFILFGGGRIENAIGYELRRWMPMDLFPALR
DAESDLARWSRSPLRPLLDRAAKTVDAKALSAIAGEVHATTSKIAALPELSDVVSQVNDQLTVMVGDKHAVKTALGFAPT
EPERLLRALQMMIDSGKRGVAEASLGSANVLYLALKHLEHQYLVDEGERQHTFLAIEEPEAHLHPHLQRLIYRNYLQTRD
EVQADTEPRSILLTTHSPNVASVAPLANVVVLRHVVDAGHTVGRSLKGVKLNTSDREDLERYIDVTRGELFFSKGVILVE
GDAEKFLLPTLAKLNDKALDFDAMGISVCSIAGTNFAPYVQLLGQKGLDIPFVVLTDFDPKNQAVSQEDADPDDNGVGNS
YGKNRVVNQIMRHLLDEEVWDKSSYGEVLELAPKHGIFLNEFTFEIDLFKAGAEDYFHTAIGSLTTNKKMHARFKGMSAD
PDSLDPSQFLKDIDSIGKGRVAQRLAAVLVEESVDVCPTYIKKALKYLKAKLA
>Mature_613_residues
MRLSRIVIKNFRNFKHFDVRLGEHAVVLGENKVGKTNLLFALRLILDPALPDSSRRLRIDDFWDGLARPLKAEDVIEVSV
EFRDFENNENLLAVLADHLVRPDPMVARVTYRYQPVQGLEGAPRSEADYEFILFGGGRIENAIGYELRRWMPMDLFPALR
DAESDLARWSRSPLRPLLDRAAKTVDAKALSAIAGEVHATTSKIAALPELSDVVSQVNDQLTVMVGDKHAVKTALGFAPT
EPERLLRALQMMIDSGKRGVAEASLGSANVLYLALKHLEHQYLVDEGERQHTFLAIEEPEAHLHPHLQRLIYRNYLQTRD
EVQADTEPRSILLTTHSPNVASVAPLANVVVLRHVVDAGHTVGRSLKGVKLNTSDREDLERYIDVTRGELFFSKGVILVE
GDAEKFLLPTLAKLNDKALDFDAMGISVCSIAGTNFAPYVQLLGQKGLDIPFVVLTDFDPKNQAVSQEDADPDDNGVGNS
YGKNRVVNQIMRHLLDEEVWDKSSYGEVLELAPKHGIFLNEFTFEIDLFKAGAEDYFHTAIGSLTTNKKMHARFKGMSAD
PDSLDPSQFLKDIDSIGKGRVAQRLAAVLVEESVDVCPTYIKKALKYLKAKLA

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68332; Mature: 68332

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSRIVIKNFRNFKHFDVRLGEHAVVLGENKVGKTNLLFALRLILDPALPDSSRRLRID
CCCHHHHHHHCCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECH
DFWDGLARPLKAEDVIEVSVEFRDFENNENLLAVLADHLVRPDPMVARVTYRYQPVQGLE
HHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
GAPRSEADYEFILFGGGRIENAIGYELRRWMPMDLFPALRDAESDLARWSRSPLRPLLDR
CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCHHHHHHHHCCCCHHHHHHH
AAKTVDAKALSAIAGEVHATTSKIAALPELSDVVSQVNDQLTVMVGDKHAVKTALGFAPT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC
EPERLLRALQMMIDSGKRGVAEASLGSANVLYLALKHLEHQYLVDEGERQHTFLAIEEPE
CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCH
AHLHPHLQRLIYRNYLQTRDEVQADTEPRSILLTTHSPNVASVAPLANVVVLRHVVDAGH
HHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCH
TVGRSLKGVKLNTSDREDLERYIDVTRGELFFSKGVILVEGDAEKFLLPTLAKLNDKALD
HHHCCCCCCEECCCCHHHHHHHHHHHCCCEEEECCEEEEECCCCHHHHHHHHHCCCCCCC
FDAMGISVCSIAGTNFAPYVQLLGQKGLDIPFVVLTDFDPKNQAVSQEDADPDDNGVGNS
CCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
YGKNRVVNQIMRHLLDEEVWDKSSYGEVLELAPKHGIFLNEFTFEIDLFKAGAEDYFHTA
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCHHHHHHH
IGSLTTNKKMHARFKGMSADPDSLDPSQFLKDIDSIGKGRVAQRLAAVLVEESVDVCPTY
HHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
IKKALKYLKAKLA
HHHHHHHHHHHCC
>Mature Secondary Structure
MRLSRIVIKNFRNFKHFDVRLGEHAVVLGENKVGKTNLLFALRLILDPALPDSSRRLRID
CCCHHHHHHHCCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECH
DFWDGLARPLKAEDVIEVSVEFRDFENNENLLAVLADHLVRPDPMVARVTYRYQPVQGLE
HHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
GAPRSEADYEFILFGGGRIENAIGYELRRWMPMDLFPALRDAESDLARWSRSPLRPLLDR
CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCHHHHHHHHCCCCHHHHHHH
AAKTVDAKALSAIAGEVHATTSKIAALPELSDVVSQVNDQLTVMVGDKHAVKTALGFAPT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC
EPERLLRALQMMIDSGKRGVAEASLGSANVLYLALKHLEHQYLVDEGERQHTFLAIEEPE
CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCH
AHLHPHLQRLIYRNYLQTRDEVQADTEPRSILLTTHSPNVASVAPLANVVVLRHVVDAGH
HHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCH
TVGRSLKGVKLNTSDREDLERYIDVTRGELFFSKGVILVEGDAEKFLLPTLAKLNDKALD
HHHCCCCCCEECCCCHHHHHHHHHHHCCCEEEECCEEEEECCCCHHHHHHHHHCCCCCCC
FDAMGISVCSIAGTNFAPYVQLLGQKGLDIPFVVLTDFDPKNQAVSQEDADPDDNGVGNS
CCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
YGKNRVVNQIMRHLLDEEVWDKSSYGEVLELAPKHGIFLNEFTFEIDLFKAGAEDYFHTA
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCHHHHHHH
IGSLTTNKKMHARFKGMSADPDSLDPSQFLKDIDSIGKGRVAQRLAAVLVEESVDVCPTY
HHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
IKKALKYLKAKLA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA