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The map label for this gene is yhjC [H]

Identifier: 91782814

GI number: 91782814

Start: 1583274

End: 1584167

Strand: Direct

Name: yhjC [H]

Synonym: Bxe_A3011

Alternate gene names: 91782814

Gene position: 1583274-1584167 (Clockwise)

Preceding gene: 91782810

Following gene: 91782816

Centisome position: 32.34

GC content: 65.55

Gene sequence:

>894_bases
ATGGATCGTTTCGAAGAAATGCGCGTTTTCGTGCGGATCGCCGAACGGCAAAGCTTCACGCGCGCTTCGGACGATCTGCA
GATTCCGCGCGCCACCGTCACCAACCTGATGAAGCGCATGGAGCAGCGGCTCGGCGCGCGGCTGCTGGAACGCACCACGC
GCACGGTGCGGCTTACGCATGACGGCGAGGCATACTACCGCCGCTGCGTGCGGCTGATCGCCGATATGGAGGAGGCCGAG
GGCTCGTTCTCGAATCTCGCGCCCAAAGGCCTGTTGCGGGTCAATTTGCAGGGCACGCTGGCGCGGCACTTCGTGGTGCC
GGCGCTGCCGGCGTTTCTCGCGCGCTTTCCAGAGATCGAGCTGACCATCGGCGAAGATGACCGGCTCGTCGATCTGGTGC
GGGAGGGCGTGGATTGCGTGCTGCGGGCAGGCAACCTGCAGGATTCGTCGATGGTGGGGCGCCGCGTCGCGCAACTTCCG
CAAGTCACCGTGGCAAGTCCGGCGTATCTCGCGGCCTATGGCGAGCCGGCCGATCCTTCGGCGCTGTCCACCCACCGCGC
GGTCAATTACGTATCGAGTGCCACGGGCAAGGCCGTGCCGCTCGAATTTAACGTGGCGGGCCGCGAGGTGGCGATGGTGC
TGCCGTCGGCGGTGTCGGTGACCGGTACCGAACTCTATACGGGCTCGGCGCTTTCGGGGCTAGGCATCGTGCAGGTGCCG
CAATACCGGGTGGCCGCCGAACTGGCGGCGGGGCGGCTGAAAATCATTCTCGCGGACTTTCCGCCGCCGCCAATGCCGGT
ATCCGTGCTGTATCCGCAGAACCGGCAGTTGTCGTCGCGGGTACGGGTGTTTGCGCAGTGGCTGGGCGATATTTTTGCCA
CGGCCGCAACATGA

Upstream 100 bases:

>100_bases
TCCGTGCATAGATAATCGGGTTAGACTGGCCATCATCATTCCATTTGCTTTAATAATCGGCGTACAAACCGCCAGAACGG
ACACCAACGGACACACCCGC

Downstream 100 bases:

>100_bases
TGTCTTCTATTCCTTGACCGGATACGGCTGCGAGCCGGCGGCGGCGGTCAGGGCGCAGGTTGAGCCGGACACACCGGGCC
GCGCGCGATCGTGCGGTGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDRFEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGEAYYRRCVRLIADMEEAE
GSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIELTIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVAQLP
QVTVASPAYLAAYGEPADPSALSTHRAVNYVSSATGKAVPLEFNVAGREVAMVLPSAVSVTGTELYTGSALSGLGIVQVP
QYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWLGDIFATAAT

Sequences:

>Translated_297_residues
MDRFEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGEAYYRRCVRLIADMEEAE
GSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIELTIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVAQLP
QVTVASPAYLAAYGEPADPSALSTHRAVNYVSSATGKAVPLEFNVAGREVAMVLPSAVSVTGTELYTGSALSGLGIVQVP
QYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWLGDIFATAAT
>Mature_297_residues
MDRFEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGEAYYRRCVRLIADMEEAE
GSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIELTIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVAQLP
QVTVASPAYLAAYGEPADPSALSTHRAVNYVSSATGKAVPLEFNVAGREVAMVLPSAVSVTGTELYTGSALSGLGIVQVP
QYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWLGDIFATAAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=36.4864864864865, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=32.8813559322034, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=31.5436241610738, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=30.0699300699301, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=28.6219081272085, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=29.8657718120805, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789173, Length=299, Percent_Identity=25.4180602006689, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789440, Length=258, Percent_Identity=22.4806201550388, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788706, Length=253, Percent_Identity=22.9249011857708, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32597; Mature: 32597

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTH
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DGEAYYRRCVRLIADMEEAEGSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIE
CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEE
LTIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVAQLPQVTVASPAYLAAYGEPADPS
EEECCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCCC
ALSTHRAVNYVSSATGKAVPLEFNVAGREVAMVLPSAVSVTGTELYTGSALSGLGIVQVP
HHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCHHEECCCEEECCCCCCCCCEEECC
QYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWLGDIFATAAT
CHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRFEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTH
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DGEAYYRRCVRLIADMEEAEGSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIE
CCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEE
LTIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVAQLPQVTVASPAYLAAYGEPADPS
EEECCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCCC
ALSTHRAVNYVSSATGKAVPLEFNVAGREVAMVLPSAVSVTGTELYTGSALSGLGIVQVP
HHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCHHEECCCEEECCCCCCCCCEEECC
QYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWLGDIFATAAT
CHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]