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The map label for this gene is ssaU [H]

Identifier: 91782705

GI number: 91782705

Start: 1481702

End: 1482442

Strand: Direct

Name: ssaU [H]

Synonym: Bxe_A3120

Alternate gene names: 91782705

Gene position: 1481702-1482442 (Clockwise)

Preceding gene: 91782704

Following gene: 91782706

Centisome position: 30.26

GC content: 62.48

Gene sequence:

>741_bases
ATGAGCGACAAAAGCGAAGCGCCCACCCCCAGGCGGATCCGCCGCGCGCGCGCGGACGGCGAGATCGCGAAGAGCGTGCA
TCTGACTGTGGCGTTCAGCGGCCTCGTCTGGTGGCTGTATCTGTTCATCGAGGCGCCGCATCTGTACGCACTCGGCAGCC
AGCTGATCCTGCACGTCACGACACTGGACGCATCGCGCGATTTTGGCGACCAGCTCGCGTCGACCTGCGCCGCGCTTTAC
GCTTTCATGGCGCCGGTGTTGACGGCGCTCGGTGTCGGCGTACTCGCGGTTCTGGTGCCGGAGCTGATGCAAACGCGCGG
CGTGCTTGCATGGAAGCGCGTCGCGCCCGACGTCAAGCGCCTGAATCCCATCAACGGGTTGAAGCAGATGTTCAGTCTGC
GCCTGCTGTGGGACAGCGTGCTCACGATCATCCAGTTCACCATTCTGCTGTTTCTGTTCACACAGGCAGTCGTAGCCTGG
CTGCGGCAACTGGCTCCTGCATGGGAATTTTCCCTGCCGGTCCATCTCGGCTATACGGCCATTGCGCATTCGCATCTGCT
GGCGTGGATGGCCGCCTCGCAGATCGTGCCCGGCGTTGCCGACTATCTCGTCCAGCGCTTTCTGTGGCTGCGCGGCCTGC
GCATGGACAAAAACGAAATCAAACGCGAATTCCGCGACGACGAAGGCGACCCTTACGTAAAAAGCCGTCGCCGCGCGCTT
CATCGGGAGCTTGGCCAATAA

Upstream 100 bases:

>100_bases
GCACCGTGAAAGCCGCGGTGCTGACGTTCGCCGCCGTGCTCAGCGTGCCTGCGCTGTTCGCGCAGTTGCGCCTCGCATTC
GATCACGTGATCCATTTGCG

Downstream 100 bases:

>100_bases
CATGTCGAACCGTTCCATTCTCAGCCGCTACGATCTGTCGGCTTTTTTTGCGCGTCATGCGGACCTCGCCGTCGGCATCG
GCATTCTGGCGGTTCTTGCC

Product: putative type III secretion transmembrane protein, EscU/SctU/YscU-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSDKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYLFIEAPHLYALGSQLILHVTTLDASRDFGDQLASTCAALY
AFMAPVLTALGVGVLAVLVPELMQTRGVLAWKRVAPDVKRLNPINGLKQMFSLRLLWDSVLTIIQFTILLFLFTQAVVAW
LRQLAPAWEFSLPVHLGYTAIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRAL
HRELGQ

Sequences:

>Translated_246_residues
MSDKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYLFIEAPHLYALGSQLILHVTTLDASRDFGDQLASTCAALY
AFMAPVLTALGVGVLAVLVPELMQTRGVLAWKRVAPDVKRLNPINGLKQMFSLRLLWDSVLTIIQFTILLFLFTQAVVAW
LRQLAPAWEFSLPVHLGYTAIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRAL
HRELGQ
>Mature_245_residues
SDKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYLFIEAPHLYALGSQLILHVTTLDASRDFGDQLASTCAALYA
FMAPVLTALGVGVLAVLVPELMQTRGVLAWKRVAPDVKRLNPINGLKQMFSLRLLWDSVLTIIQFTILLFLFTQAVVAWL
RQLAPAWEFSLPVHLGYTAIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRALH
RELGQ

Specific function: Part of a type III secretion system [H]

COG id: COG4792

COG function: function code U; Type III secretory pathway, component EscU

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=241, Percent_Identity=29.045643153527, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 27844; Mature: 27713

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCC
>Mature Secondary Structure 
SDKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYLFIEAPHLYALGSQLILHVT
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TLDASRDFGDQLASTCAALYAFMAPVLTALGVGVLAVLVPELMQTRGVLAWKRVAPDVKR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHH
LNPINGLKQMFSLRLLWDSVLTIIQFTILLFLFTQAVVAWLRQLAPAWEFSLPVHLGYTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHH
IAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRAL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
HRELGQ
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]