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The map label for this gene is yciR [C]

Identifier: 91782555

GI number: 91782555

Start: 1323416

End: 1325269

Strand: Direct

Name: yciR [C]

Synonym: Bxe_A3273

Alternate gene names: 91782555

Gene position: 1323416-1325269 (Clockwise)

Preceding gene: 91782554

Following gene: 91782557

Centisome position: 27.03

GC content: 63.38

Gene sequence:

>1854_bases
GTGCGCGAAAGCCGTTATCATACGCACGGCTGCCCAAAACATTGGACTGGAGTTGCGCCGCTTTACTCGGGACTTTACTG
TTTGCGCGCGTCAAAAACACGTTCGATCGCTTCGACTACTCACGAATATCAAAAGGCTGGCGCGATGCAAGACCACCTCT
ACGCCGCAGCGCGTCCGCGCGACGCCGCGCTAGCGTCGGCGCCTTGCGGCATGTTCATCTGCCGCGCGGATGGCACGTTC
GATTCCGTCAACGCCGCTTTCGAAAAGCTGACTGGATTTGCGGCAGAGGAACTGATCGGGCGGCGCACTTTCGAATCTTT
GCTCGATCCGGCCGAATTAGCGAGGCGCCGCGCCGAGCTTCCGCAGCTTGAAATGGTGACTTCGCGCTACGAAAGCGAAT
GGAGTTTCCTCAGGCGCAATGGCACGCCGATTCGCGTGGTGCTGGCGTTGGCGCCGCTTGTCGCGGGGCCGGCGCATGCG
GGCGGTGCAGGCGCCGGACCGGCGTGTTATGTGGGCATGGCATTCGACATGACACGTTACGCGCAGTCGGAAGCGCGTCT
CTGGTATGTCGCGCATCACGACGGCGTGACCCGTCTGCCGAATCAAACGCTTTTTACTGAACGGCTGGAGTTGACGATCG
CGCGTTGCCAGCGCAACGGCAGCGGTTTTACCGTGCTGATCGCCGAACTCGATCACTTGCGCAAACTGCGCGACGCGCTC
GGTTTGCACGCCGCCGAGCTCGTGCTGCAGATCGTCGGTGAACGCTTGCGCGGCCTCTTTCCAAACGACGGCACGATCGC
CTCGATCGGCGGGACGCAGTTCGCGCTGCTGGTCAACGAAACCGGCGCAGCCGCCGATGCCTTCGCGGCCGAAGCGCTGG
CCCGCATCGCCGAAGCCATCGACTACGCCGGCACCGCGTTGAACATTACCGCGAGCATCGGCATCGTCGCTTATCCGGCC
GATGGTGGCGATGCGCCTACGCTGATGCGTCGCGCGGGCGTGGCGTTGTCGGCGGCATCGGCCGTGACGGGCAATGCGGT
GCGGCGCTTTTCCGCCGCGCTGGAAGGTCAGGCCGCGCGCCGCTTCGAGCTGGAGACCATGCTGCGTGAAGCGATCGAGC
GTCAGCAACTGCATCTCGTGTATCAACCGCAGGTGACGCTCTCCACTGGCCGTATCGCGCAAGTCGAAACGCTGCTGCGC
TGGAACCATCCGCAGCGCGGGCTGATCAGCCCGGTCGAATTCGTGCCGGTCGCGGAGGAGGCGGGTCTGATCGAGCAGAT
CGGCGAGTGGGTGATCCGGACCGCGTGCCGCGACGCCGGCAAATTGCTGCGACTGACCGGCACGTTGCCGCGCTTCGCGG
TGAATGTATCGCCGCAGCAGTTCCAGCGGCAAAACCTGTTCGAGACGATTCGCGAAGCACTCGATGAGGCCGCGCTCGAC
CCTTCCTACCTCGAAGTGGAAATCACCGAAGGAGTGCTGCTCGGCGACACCGAGCAAGCTTTGCAAACGCTCTTTGCGTT
GCGCGAACTGGGCGTGGAAGTCGCGGTGGACGATTTCGGCACCGGCTATTCGAGCCTCGCGTATCTGACGCGTTTCCCGC
TGAATCGCCTGAAAATCGACCGCTCGTTCGTGATGCGCATGAGCACGGATTCGCAGTGTGAGGCGCTGGTCGGCGCCATC
ATCGCGATGGCGCATGCGCTCAAATCGCGCGTAACGGCCGAAGGCGTCGAAACGGCGGAGCAGGCCGCGCAACTCGAAGC
GCTCGGCTGTGACGAAGCGCAAGGCTTCTGGTTCTCGCGTCCGATTACGGTTGGCGCGCTGCGGAATTTGTTGAGGCCGT
TGGGCACACCCTAA

Upstream 100 bases:

>100_bases
GCACCTGATCGATTGAATCGCCACCTTTGCCGCAAAGCGTCGGGGATTACACCAAGGGAAACGATTGGCGTGAAGAACGC
AGGCTCTGCGAGGTCGGCGG

Downstream 100 bases:

>100_bases
GGCGCGGATTTGCCGGCAGCCCGATGACGCGCCGGCATGCAGTATTGCCACCATGCCGGCAGCTATGCTTAGCCATCCAT
ATCAATTCTTGATCCGGTGC

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 617; Mature: 617

Protein sequence:

>617_residues
MRESRYHTHGCPKHWTGVAPLYSGLYCLRASKTRSIASTTHEYQKAGAMQDHLYAAARPRDAALASAPCGMFICRADGTF
DSVNAAFEKLTGFAAEELIGRRTFESLLDPAELARRRAELPQLEMVTSRYESEWSFLRRNGTPIRVVLALAPLVAGPAHA
GGAGAGPACYVGMAFDMTRYAQSEARLWYVAHHDGVTRLPNQTLFTERLELTIARCQRNGSGFTVLIAELDHLRKLRDAL
GLHAAELVLQIVGERLRGLFPNDGTIASIGGTQFALLVNETGAAADAFAAEALARIAEAIDYAGTALNITASIGIVAYPA
DGGDAPTLMRRAGVALSAASAVTGNAVRRFSAALEGQAARRFELETMLREAIERQQLHLVYQPQVTLSTGRIAQVETLLR
WNHPQRGLISPVEFVPVAEEAGLIEQIGEWVIRTACRDAGKLLRLTGTLPRFAVNVSPQQFQRQNLFETIREALDEAALD
PSYLEVEITEGVLLGDTEQALQTLFALRELGVEVAVDDFGTGYSSLAYLTRFPLNRLKIDRSFVMRMSTDSQCEALVGAI
IAMAHALKSRVTAEGVETAEQAAQLEALGCDEAQGFWFSRPITVGALRNLLRPLGTP

Sequences:

>Translated_617_residues
MRESRYHTHGCPKHWTGVAPLYSGLYCLRASKTRSIASTTHEYQKAGAMQDHLYAAARPRDAALASAPCGMFICRADGTF
DSVNAAFEKLTGFAAEELIGRRTFESLLDPAELARRRAELPQLEMVTSRYESEWSFLRRNGTPIRVVLALAPLVAGPAHA
GGAGAGPACYVGMAFDMTRYAQSEARLWYVAHHDGVTRLPNQTLFTERLELTIARCQRNGSGFTVLIAELDHLRKLRDAL
GLHAAELVLQIVGERLRGLFPNDGTIASIGGTQFALLVNETGAAADAFAAEALARIAEAIDYAGTALNITASIGIVAYPA
DGGDAPTLMRRAGVALSAASAVTGNAVRRFSAALEGQAARRFELETMLREAIERQQLHLVYQPQVTLSTGRIAQVETLLR
WNHPQRGLISPVEFVPVAEEAGLIEQIGEWVIRTACRDAGKLLRLTGTLPRFAVNVSPQQFQRQNLFETIREALDEAALD
PSYLEVEITEGVLLGDTEQALQTLFALRELGVEVAVDDFGTGYSSLAYLTRFPLNRLKIDRSFVMRMSTDSQCEALVGAI
IAMAHALKSRVTAEGVETAEQAAQLEALGCDEAQGFWFSRPITVGALRNLLRPLGTP
>Mature_617_residues
MRESRYHTHGCPKHWTGVAPLYSGLYCLRASKTRSIASTTHEYQKAGAMQDHLYAAARPRDAALASAPCGMFICRADGTF
DSVNAAFEKLTGFAAEELIGRRTFESLLDPAELARRRAELPQLEMVTSRYESEWSFLRRNGTPIRVVLALAPLVAGPAHA
GGAGAGPACYVGMAFDMTRYAQSEARLWYVAHHDGVTRLPNQTLFTERLELTIARCQRNGSGFTVLIAELDHLRKLRDAL
GLHAAELVLQIVGERLRGLFPNDGTIASIGGTQFALLVNETGAAADAFAAEALARIAEAIDYAGTALNITASIGIVAYPA
DGGDAPTLMRRAGVALSAASAVTGNAVRRFSAALEGQAARRFELETMLREAIERQQLHLVYQPQVTLSTGRIAQVETLLR
WNHPQRGLISPVEFVPVAEEAGLIEQIGEWVIRTACRDAGKLLRLTGTLPRFAVNVSPQQFQRQNLFETIREALDEAALD
PSYLEVEITEGVLLGDTEQALQTLFALRELGVEVAVDDFGTGYSSLAYLTRFPLNRLKIDRSFVMRMSTDSQCEALVGAI
IAMAHALKSRVTAEGVETAEQAAQLEALGCDEAQGFWFSRPITVGALRNLLRPLGTP

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=543, Percent_Identity=30.939226519337, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87081921, Length=450, Percent_Identity=32.6666666666667, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=30.4347826086957, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1790496, Length=233, Percent_Identity=37.3390557939914, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=35.6275303643725, Blast_Score=158, Evalue=8e-40,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=32.618025751073, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=33.6099585062241, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=33.0578512396694, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=32.3404255319149, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788849, Length=266, Percent_Identity=33.0827067669173, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=31.5573770491803, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=256, Percent_Identity=27.34375, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 67108; Mature: 67108

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRESRYHTHGCPKHWTGVAPLYSGLYCLRASKTRSIASTTHEYQKAGAMQDHLYAAARPR
CCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
DAALASAPCGMFICRADGTFDSVNAAFEKLTGFAAEELIGRRTFESLLDPAELARRRAEL
CHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
PQLEMVTSRYESEWSFLRRNGTPIRVVLALAPLVAGPAHAGGAGAGPACYVGMAFDMTRY
CHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHH
AQSEARLWYVAHHDGVTRLPNQTLFTERLELTIARCQRNGSGFTVLIAELDHLRKLRDAL
HCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH
GLHAAELVLQIVGERLRGLFPNDGTIASIGGTQFALLVNETGAAADAFAAEALARIAEAI
CHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
DYAGTALNITASIGIVAYPADGGDAPTLMRRAGVALSAASAVTGNAVRRFSAALEGQAAR
HHCCCEEEEEEEEEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
RFELETMLREAIERQQLHLVYQPQVTLSTGRIAQVETLLRWNHPQRGLISPVEFVPVAEE
HHHHHHHHHHHHHHHHEEEEECCCEEECCCCHHHHHHHHHCCCCCCCCCCCHHEECCCHH
AGLIEQIGEWVIRTACRDAGKLLRLTGTLPRFAVNVSPQQFQRQNLFETIREALDEAALD
CCHHHHHHHHHHHHHHHHHHHEEEHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCC
PSYLEVEITEGVLLGDTEQALQTLFALRELGVEVAVDDFGTGYSSLAYLTRFPLNRLKID
CCEEEEEEECCEEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHEEC
RSFVMRMSTDSQCEALVGAIIAMAHALKSRVTAEGVETAEQAAQLEALGCDEAQGFWFSR
HHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
PITVGALRNLLRPLGTP
CCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRESRYHTHGCPKHWTGVAPLYSGLYCLRASKTRSIASTTHEYQKAGAMQDHLYAAARPR
CCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
DAALASAPCGMFICRADGTFDSVNAAFEKLTGFAAEELIGRRTFESLLDPAELARRRAEL
CHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
PQLEMVTSRYESEWSFLRRNGTPIRVVLALAPLVAGPAHAGGAGAGPACYVGMAFDMTRY
CHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHH
AQSEARLWYVAHHDGVTRLPNQTLFTERLELTIARCQRNGSGFTVLIAELDHLRKLRDAL
HCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH
GLHAAELVLQIVGERLRGLFPNDGTIASIGGTQFALLVNETGAAADAFAAEALARIAEAI
CHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
DYAGTALNITASIGIVAYPADGGDAPTLMRRAGVALSAASAVTGNAVRRFSAALEGQAAR
HHCCCEEEEEEEEEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
RFELETMLREAIERQQLHLVYQPQVTLSTGRIAQVETLLRWNHPQRGLISPVEFVPVAEE
HHHHHHHHHHHHHHHHEEEEECCCEEECCCCHHHHHHHHHCCCCCCCCCCCHHEECCCHH
AGLIEQIGEWVIRTACRDAGKLLRLTGTLPRFAVNVSPQQFQRQNLFETIREALDEAALD
CCHHHHHHHHHHHHHHHHHHHEEEHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCC
PSYLEVEITEGVLLGDTEQALQTLFALRELGVEVAVDDFGTGYSSLAYLTRFPLNRLKID
CCEEEEEEECCEEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHEEC
RSFVMRMSTDSQCEALVGAIIAMAHALKSRVTAEGVETAEQAAQLEALGCDEAQGFWFSR
HHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
PITVGALRNLLRPLGTP
CCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]