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The map label for this gene is ydfD [H]

Identifier: 91782499

GI number: 91782499

Start: 1255842

End: 1257296

Strand: Direct

Name: ydfD [H]

Synonym: Bxe_A3330

Alternate gene names: 91782499

Gene position: 1255842-1257296 (Clockwise)

Preceding gene: 91782492

Following gene: 91782500

Centisome position: 25.65

GC content: 66.94

Gene sequence:

>1455_bases
ATGTCCGTCCCGCTTGCCCAGATTCCCGCCCCGCACGACACGGCGTCGCTGACGCTGGTGGAGCAGCTCGTCCAGTGGGC
GCGCCGCCGTATCGAGGAACGCGTGTTCCGCCCCGGCATGCGCATGCCGTCGATCCGCAAGCTCGCGCTCGACAAGGGCG
TATCGCGCTTCACGGTGGTCGAGGCGTACGAACGGCTGGTGGCGCAGGGTTTTCTGGAGTCGCGGCGCGGCTCCGGGTTC
TACGTGCGCGAGCGGCTCGCCGCCGCGGCCTCCGCCGAGATTCATCCGCTCACCGAGGCGGCGCCGGCGCCCGCCACTAT
CGACGTGGTCTGGCTGCTGCGCAACATGCTGCACACCGGCGCGCGTCCGGAGCGCAGTCCCGGCCTCGGTTATCTGCCGG
CGCGCTGGCTCGACGGCGACCTGATCACCAACGCGCTGCGCACTCTCGGCCGGCAAAGCGGCGCGCAGATGCTCGGCATC
GGCACGCCGCAGGGCTTCCTGCCGCTGCGCCAGCAGTTGCAGACGCGGCTCGAGGAACTGGAGATCGGTGCTTCGCCGGA
TCAGATCGTGATGGTGTCCGGCATTACGCAGGCGATCGACCTGATTTCGCGCATCTACGTGAAACCGGGCGATGCGGTGA
TTGTCGGCGATCCGGCGTGGTTTCAGATGTTCGGGCGCTTCGCCTCGCAGGGCGCGCGGCTGGTGGGCATGCCGTACACG
CCGGACGGCCCGGATCTCGACGCGCTCGAATCGCTCGTGCAGACCTGGCGGCCGAAAATGCTGGTGATCAACTCGGTGCT
GCAAAACCCCACCGGCACGTCGCTCACGGCGGCCCAGGCGTTCCGCATTCTGCGTCTGGCCGAAGCGTACGATTTCATCG
TCGTCGAGGACGATATTTACGGCGATCTGTGCCCGCCGAGCTATCCGGGCACGCGGCTCGCGAGCCTCGACCAGTTGAAG
CGCGTGATCTACCTGGGCAGTTTTTCGAAGACGCTCGCGCCGAATCTGCGGGTCGGTTTCATTGCCTGCGCGCCTGACGT
GGCGACGGCGGTCAGCGACCAGAAGATGCTGGTCGGCATGACGAGCCCGGAGTTGAACGAGCGCGTGCTGTACAAGATCC
TGACCGAGGGGCATTATCGGCGGCACGTCGAACGGCTGCGCGTGCGGCTCGACGGCGTGCGCGAAAAATCCGTGCGGATG
CTGGAGAAGACCGGCCTGAAGCTGTTCCTGACGCCAATGGCCGGCATGTTCCTGTGGGCCGACACCGGTGTCGACGCCGA
CGCGCTGGCGGCCGCCGGTCATGAAGCCGGCTTTCTGCTCACGCCCGGCAGCCTGTTTTCGCCGCAGCAGTCGCCGACCA
CATGGATGCGCTTCAATATCGCCAACTGCGGTGATCCTGAGCTGGCAACGTTTCTGTGCCGTTATCTCGACGGCGTGGCG
CGGCGCGCCTCTTGA

Upstream 100 bases:

>100_bases
CTGCGTCCCATCCTTTGCTTATCTCAAATGTAGCGGCGCCGACCTGCACAGTAACGATACAATCGGTTCGATACTATTCG
GTACAGTTGGAGCCCCTGTC

Downstream 100 bases:

>100_bases
AACCGCGCCGGCTTGCCCCCAATTAGGCGGACGATCCGGCGGCTCGGCCACGGCCACGGCTACGGCTACGGCTACGGCTA
CGGCTACGGCTACGGCTACG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MSVPLAQIPAPHDTASLTLVEQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVVEAYERLVAQGFLESRRGSGF
YVRERLAAAASAEIHPLTEAAPAPATIDVVWLLRNMLHTGARPERSPGLGYLPARWLDGDLITNALRTLGRQSGAQMLGI
GTPQGFLPLRQQLQTRLEELEIGASPDQIVMVSGITQAIDLISRIYVKPGDAVIVGDPAWFQMFGRFASQGARLVGMPYT
PDGPDLDALESLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEAYDFIVVEDDIYGDLCPPSYPGTRLASLDQLK
RVIYLGSFSKTLAPNLRVGFIACAPDVATAVSDQKMLVGMTSPELNERVLYKILTEGHYRRHVERLRVRLDGVREKSVRM
LEKTGLKLFLTPMAGMFLWADTGVDADALAAAGHEAGFLLTPGSLFSPQQSPTTWMRFNIANCGDPELATFLCRYLDGVA
RRAS

Sequences:

>Translated_484_residues
MSVPLAQIPAPHDTASLTLVEQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVVEAYERLVAQGFLESRRGSGF
YVRERLAAAASAEIHPLTEAAPAPATIDVVWLLRNMLHTGARPERSPGLGYLPARWLDGDLITNALRTLGRQSGAQMLGI
GTPQGFLPLRQQLQTRLEELEIGASPDQIVMVSGITQAIDLISRIYVKPGDAVIVGDPAWFQMFGRFASQGARLVGMPYT
PDGPDLDALESLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEAYDFIVVEDDIYGDLCPPSYPGTRLASLDQLK
RVIYLGSFSKTLAPNLRVGFIACAPDVATAVSDQKMLVGMTSPELNERVLYKILTEGHYRRHVERLRVRLDGVREKSVRM
LEKTGLKLFLTPMAGMFLWADTGVDADALAAAGHEAGFLLTPGSLFSPQQSPTTWMRFNIANCGDPELATFLCRYLDGVA
RRAS
>Mature_483_residues
SVPLAQIPAPHDTASLTLVEQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVVEAYERLVAQGFLESRRGSGFY
VRERLAAAASAEIHPLTEAAPAPATIDVVWLLRNMLHTGARPERSPGLGYLPARWLDGDLITNALRTLGRQSGAQMLGIG
TPQGFLPLRQQLQTRLEELEIGASPDQIVMVSGITQAIDLISRIYVKPGDAVIVGDPAWFQMFGRFASQGARLVGMPYTP
DGPDLDALESLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEAYDFIVVEDDIYGDLCPPSYPGTRLASLDQLKR
VIYLGSFSKTLAPNLRVGFIACAPDVATAVSDQKMLVGMTSPELNERVLYKILTEGHYRRHVERLRVRLDGVREKSVRML
EKTGLKLFLTPMAGMFLWADTGVDADALAAAGHEAGFLLTPGSLFSPQQSPTTWMRFNIANCGDPELATFLCRYLDGVAR
RAS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=322, Percent_Identity=26.3975155279503, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI33469970, Length=322, Percent_Identity=26.3975155279503, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1787710, Length=450, Percent_Identity=26.8888888888889, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1790797, Length=454, Percent_Identity=26.431718061674, Blast_Score=141, Evalue=1e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53343; Mature: 53212

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPLAQIPAPHDTASLTLVEQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
EAYERLVAQGFLESRRGSGFYVRERLAAAASAEIHPLTEAAPAPATIDVVWLLRNMLHTG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
ARPERSPGLGYLPARWLDGDLITNALRTLGRQSGAQMLGIGTPQGFLPLRQQLQTRLEEL
CCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
EIGASPDQIVMVSGITQAIDLISRIYVKPGDAVIVGDPAWFQMFGRFASQGARLVGMPYT
HCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECCCC
PDGPDLDALESLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEAYDFIVVEDDIY
CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCC
GDLCPPSYPGTRLASLDQLKRVIYLGSFSKTLAPNLRVGFIACAPDVATAVSDQKMLVGM
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCHHHHHHCCCEEEEEC
TSPELNERVLYKILTEGHYRRHVERLRVRLDGVREKSVRMLEKTGLKLFLTPMAGMFLWA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCCCEEEEE
DTGVDADALAAAGHEAGFLLTPGSLFSPQQSPTTWMRFNIANCGDPELATFLCRYLDGVA
CCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
RRAS
HCCC
>Mature Secondary Structure 
SVPLAQIPAPHDTASLTLVEQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
EAYERLVAQGFLESRRGSGFYVRERLAAAASAEIHPLTEAAPAPATIDVVWLLRNMLHTG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
ARPERSPGLGYLPARWLDGDLITNALRTLGRQSGAQMLGIGTPQGFLPLRQQLQTRLEEL
CCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
EIGASPDQIVMVSGITQAIDLISRIYVKPGDAVIVGDPAWFQMFGRFASQGARLVGMPYT
HCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECCCC
PDGPDLDALESLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEAYDFIVVEDDIY
CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCC
GDLCPPSYPGTRLASLDQLKRVIYLGSFSKTLAPNLRVGFIACAPDVATAVSDQKMLVGM
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCHHHHHHCCCEEEEEC
TSPELNERVLYKILTEGHYRRHVERLRVRLDGVREKSVRMLEKTGLKLFLTPMAGMFLWA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCCCEEEEE
DTGVDADALAAAGHEAGFLLTPGSLFSPQQSPTTWMRFNIANCGDPELATFLCRYLDGVA
CCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
RRAS
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]