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The map label for this gene is yfdE [H]

Identifier: 91782298

GI number: 91782298

Start: 1026575

End: 1027858

Strand: Direct

Name: yfdE [H]

Synonym: Bxe_A3535

Alternate gene names: 91782298

Gene position: 1026575-1027858 (Clockwise)

Preceding gene: 91782297

Following gene: 91782299

Centisome position: 20.97

GC content: 64.8

Gene sequence:

>1284_bases
ATGCTGTCGAATCTGGTCAGTGAATTTCCGCAACACGAGCCGCGCCCGGCGAATGCGCCGAGGGCGCTCGAAGGTATCCG
CGTGGTGGACTTCACGCATTTCATCGCCGGCCCGTTTGCGACGATGATGCTGGCCGACATGGGGGCCGAGGTCATCAAGA
TCGAAGCGCCCGGCCGCGGCGACGAGTTCCGCTACTATCCTCCCGCGCATCCGCAGGATGAGAGCATCGGCGCGCCGTAC
CTCTGGGCGAATCGCAACAAGCGCAGCATTGCGCTCGATCTGAAGCACGAAGACGGTCGCCGCATCGCGCGCGAACTGAT
CGCGACCGCAGACGTCGTCGCCGAGAATTTCTCGACCGGCGTGATGGAACGTCTCGGCCTCGGCTACGAAGCATGCCGCG
AGTCGAACCCGGAGCTGATCTATTGTTCGGTGTCTGCGTATGGCCGCGAAGGCGCGTTTGCCGATCGGCTTGGTTTTGAT
CCGGTCGCGCAGGCGGAAAGCGGCTTCGTGTCGATGAACGGTTACCCGGACCGTCTCGGCGTGCGGGCGCTGTCGCCGGT
CATGGATATCAGCACCGCGATGATGGCCTCGAACGCGATCCTCGGCGCACTGGTCGCGCGCGAGCGCAGCGGCAAGGGGC
AGGCCGTCGAGGTGTCGCTGTTCGACAATGCCGTGCTGATGACTGGCTATGCGACCGTCCAGCATCTGTTCACCGGTGAC
GAGCCGCAGCGCCACGGCAATACGAGTCCCGACACGTGCCCTTCCGGCGTGTTCAAGGCGTCGGACGGCGCGTTCTACAT
CAATTGCGGCAACAACAAGATCTTCCATCGTCTCGCGAGTCAGGTGCTGGAAATGCCGGAACTGGCAGCCGACCCGGTGC
TGGCGGACCGCAATGGCCGGATCGCGCGGCGCGACGAACTGTTCCGGATTCTGGACGAGGCGTTCATCCGCCATCCGTGG
GCCTACTGGCAGCAGCGGATGCGGGCGGCGTCGATTCCGTGCGGCGAAGTGCGCTCGGTCGGCGAAGCTCTGCGTTCGGC
CGAAGCGCGCGAGCGAAAGCTCGTAAGCCGGCTCGAACATCCCGATCTGGGCTGGTTGCCAAACATCAGCCTGCCGTTCC
GCTTCAGCGAGACGCCGATGGAAGATCCGTCGCCGGCGCCGCGCATCGGCGAGCATAGCCGCGACATTCTCACCCACGTA
CTCGGCTACGAGGACGACAGCGCGAGCGCGTTGCTCGACAGCGGCGTGGTTTACAGCAGCGTCGAAAAGGCGCGCGCGGG
ATGA

Upstream 100 bases:

>100_bases
GCCGACGCTGGTGCTCGATCTCTGAGCACGCGCCGCGCACGCAAACGAATACGAACTCACCGGCAGGCGCCGCCGCGCGC
CGCCTCGACAAGGAGACAAG

Downstream 100 bases:

>100_bases
CGGCGGCCTCGGCGGGCGGGGAGGCGGCGCGGGCTCGCAACGAGGCCGGCCGCCGCGTCGCTGGACGGCCAGAGCGGTGG
GGGCAATCTGTATAATCTGT

Product: putative L-carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MLSNLVSEFPQHEPRPANAPRALEGIRVVDFTHFIAGPFATMMLADMGAEVIKIEAPGRGDEFRYYPPAHPQDESIGAPY
LWANRNKRSIALDLKHEDGRRIARELIATADVVAENFSTGVMERLGLGYEACRESNPELIYCSVSAYGREGAFADRLGFD
PVAQAESGFVSMNGYPDRLGVRALSPVMDISTAMMASNAILGALVARERSGKGQAVEVSLFDNAVLMTGYATVQHLFTGD
EPQRHGNTSPDTCPSGVFKASDGAFYINCGNNKIFHRLASQVLEMPELAADPVLADRNGRIARRDELFRILDEAFIRHPW
AYWQQRMRAASIPCGEVRSVGEALRSAEARERKLVSRLEHPDLGWLPNISLPFRFSETPMEDPSPAPRIGEHSRDILTHV
LGYEDDSASALLDSGVVYSSVEKARAG

Sequences:

>Translated_427_residues
MLSNLVSEFPQHEPRPANAPRALEGIRVVDFTHFIAGPFATMMLADMGAEVIKIEAPGRGDEFRYYPPAHPQDESIGAPY
LWANRNKRSIALDLKHEDGRRIARELIATADVVAENFSTGVMERLGLGYEACRESNPELIYCSVSAYGREGAFADRLGFD
PVAQAESGFVSMNGYPDRLGVRALSPVMDISTAMMASNAILGALVARERSGKGQAVEVSLFDNAVLMTGYATVQHLFTGD
EPQRHGNTSPDTCPSGVFKASDGAFYINCGNNKIFHRLASQVLEMPELAADPVLADRNGRIARRDELFRILDEAFIRHPW
AYWQQRMRAASIPCGEVRSVGEALRSAEARERKLVSRLEHPDLGWLPNISLPFRFSETPMEDPSPAPRIGEHSRDILTHV
LGYEDDSASALLDSGVVYSSVEKARAG
>Mature_427_residues
MLSNLVSEFPQHEPRPANAPRALEGIRVVDFTHFIAGPFATMMLADMGAEVIKIEAPGRGDEFRYYPPAHPQDESIGAPY
LWANRNKRSIALDLKHEDGRRIARELIATADVVAENFSTGVMERLGLGYEACRESNPELIYCSVSAYGREGAFADRLGFD
PVAQAESGFVSMNGYPDRLGVRALSPVMDISTAMMASNAILGALVARERSGKGQAVEVSLFDNAVLMTGYATVQHLFTGD
EPQRHGNTSPDTCPSGVFKASDGAFYINCGNNKIFHRLASQVLEMPELAADPVLADRNGRIARRDELFRILDEAFIRHPW
AYWQQRMRAASIPCGEVRSVGEALRSAEARERKLVSRLEHPDLGWLPNISLPFRFSETPMEDPSPAPRIGEHSRDILTHV
LGYEDDSASALLDSGVVYSSVEKARAG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=34.9875930521092, Blast_Score=258, Evalue=5e-69,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=33.3333333333333, Blast_Score=247, Evalue=2e-65,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=33.2506203473945, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=29.8368298368298, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=26.9607843137255, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI266456254, Length=381, Percent_Identity=27.5590551181102, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458393, Length=247, Percent_Identity=31.9838056680162, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=247, Percent_Identity=31.9838056680162, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42822893, Length=148, Percent_Identity=39.1891891891892, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=39.1891891891892, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI87082093, Length=333, Percent_Identity=34.8348348348348, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1788717, Length=412, Percent_Identity=30.0970873786408, Blast_Score=148, Evalue=8e-37,
Organism=Escherichia coli, GI1786222, Length=418, Percent_Identity=25.5980861244019, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=231, Percent_Identity=29.4372294372294, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=339, Percent_Identity=25.0737463126844, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24648431, Length=399, Percent_Identity=34.8370927318296, Blast_Score=237, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24585488, Length=310, Percent_Identity=29.0322580645161, Blast_Score=115, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 46964; Mature: 46964

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSNLVSEFPQHEPRPANAPRALEGIRVVDFTHFIAGPFATMMLADMGAEVIKIEAPGRG
CHHHHHHHCCCCCCCCCCCCHHHHCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
DEFRYYPPAHPQDESIGAPYLWANRNKRSIALDLKHEDGRRIARELIATADVVAENFSTG
CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VMERLGLGYEACRESNPELIYCSVSAYGREGAFADRLGFDPVAQAESGFVSMNGYPDRLG
HHHHHCCCHHHHHCCCCCEEEEEEECCCCCCCCHHHCCCCCHHHCCCCEEEECCCCCHHH
VRALSPVMDISTAMMASNAILGALVARERSGKGQAVEVSLFDNAVLMTGYATVQHLFTGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEHHHHHHHHHHCCC
EPQRHGNTSPDTCPSGVFKASDGAFYINCGNNKIFHRLASQVLEMPELAADPVLADRNGR
CHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
IARRDELFRILDEAFIRHPWAYWQQRMRAASIPCGEVRSVGEALRSAEARERKLVSRLEH
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDLGWLPNISLPFRFSETPMEDPSPAPRIGEHSRDILTHVLGYEDDSASALLDSGVVYSS
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHH
VEKARAG
HHHHCCC
>Mature Secondary Structure
MLSNLVSEFPQHEPRPANAPRALEGIRVVDFTHFIAGPFATMMLADMGAEVIKIEAPGRG
CHHHHHHHCCCCCCCCCCCCHHHHCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
DEFRYYPPAHPQDESIGAPYLWANRNKRSIALDLKHEDGRRIARELIATADVVAENFSTG
CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VMERLGLGYEACRESNPELIYCSVSAYGREGAFADRLGFDPVAQAESGFVSMNGYPDRLG
HHHHHCCCHHHHHCCCCCEEEEEEECCCCCCCCHHHCCCCCHHHCCCCEEEECCCCCHHH
VRALSPVMDISTAMMASNAILGALVARERSGKGQAVEVSLFDNAVLMTGYATVQHLFTGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEHHHHHHHHHHCCC
EPQRHGNTSPDTCPSGVFKASDGAFYINCGNNKIFHRLASQVLEMPELAADPVLADRNGR
CHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
IARRDELFRILDEAFIRHPWAYWQQRMRAASIPCGEVRSVGEALRSAEARERKLVSRLEH
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDLGWLPNISLPFRFSETPMEDPSPAPRIGEHSRDILTHVLGYEDDSASALLDSGVVYSS
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHH
VEKARAG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]