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The map label for this gene is yafC [H]

Identifier: 91782250

GI number: 91782250

Start: 971744

End: 972682

Strand: Reverse

Name: yafC [H]

Synonym: Bxe_A3585

Alternate gene names: 91782250

Gene position: 972682-971744 (Counterclockwise)

Preceding gene: 91782251

Following gene: 91782249

Centisome position: 19.87

GC content: 56.02

Gene sequence:

>939_bases
ATGGACACATTGGAGAACATGCGGATGTTCGTTCGAGTCGTGGAAGCAGGCAGCTTCACGAAGGCCGCATCTCTTTTGTC
GGTGGCGACACCTCAGGTATCGCGTGCCATAACAGAACTGGAGTCGCGATTGCGTACCCGTCTGCTTAACCGGACGACGC
GACACATGTCACTAACCGAAGCGGGCGAACGTTACCTGCAACGTTGCGAACAGATTCTTGAATACGTCGGTCTGGCCGAA
GCGGAAGCCGCAGGAGCGGCGGCGCAGCCGTCCGGAAAGCTGCGGATTCACGGCACCACCAGTTTCGGGCAACATTATCT
GGCGCCACTCATCGCGCGCTATAACCAGCGATTCCCGGACGTCCTCATTGATCTTGTACTCGCACAACGAGTGCCGGACA
TGATCGAGGAAGGGTTTGATGTATCGGTGGTCGTGGCTAGAGAATTGGCCGATTCGGCACTCGTCTCACAACGCATCGGT
ACCACGTGCACTGTTCTCTGTGCTTCGCCCCAGTACCTGTCGAAGCGAGGTATGCCTGTCTCACTAGAAGATCTGAACAC
GCATACGTGCCTGCAACTCGTTCTCCCGGATGTACCCTCGGGACAATGGATTTTTGATGGTCCGGACGCGCAGGTGTTCC
GTCATACACGATCGACACCGCTTACAGTCAACGTCGCCGAAGCGCTGGCCGAAGCGATTCGCGAAGGCATGGGCATCGGC
CCGCTGCCATTATCATTGGCATTGCAGGGTTTTCGCGACGGAAGCCTCGTGCGCGTGCTGGATGGACACCGACTGCAATC
CAACAACATCTACGCCCTTTACGCGTCCAGACAATATCTCGATGCGAAAATCAGGACCTTCGTCGAATTCCTTCGGGAAA
ACGTACCGATCCAACTTGCCGAACAGGAACGCGAGCTTTTCCATCGATTGGTCAATTGA

Upstream 100 bases:

>100_bases
ACACAGCGCGAGAAACAGCTACAAATCAGGGCGCCAATCAAACTACTCGCCAGAAACAGAAAAACTCGCTCTTTGACACT
TCCTTTACCACGGAGCATTG

Downstream 100 bases:

>100_bases
AAGTCTCCGCTCCAGATTTCTACCTTATTCGCGGTTGCAAGTAGACCCGATATCCATGCCGATGATTCGCTCCTGCGCAG
TGGAATTCATTTGATGCCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDTLENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTEAGERYLQRCEQILEYVGLAE
AEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPDVLIDLVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIG
TTCTVLCASPQYLSKRGMPVSLEDLNTHTCLQLVLPDVPSGQWIFDGPDAQVFRHTRSTPLTVNVAEALAEAIREGMGIG
PLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFLRENVPIQLAEQERELFHRLVN

Sequences:

>Translated_312_residues
MDTLENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTEAGERYLQRCEQILEYVGLAE
AEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPDVLIDLVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIG
TTCTVLCASPQYLSKRGMPVSLEDLNTHTCLQLVLPDVPSGQWIFDGPDAQVFRHTRSTPLTVNVAEALAEAIREGMGIG
PLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFLRENVPIQLAEQERELFHRLVN
>Mature_312_residues
MDTLENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTEAGERYLQRCEQILEYVGLAE
AEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPDVLIDLVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIG
TTCTVLCASPQYLSKRGMPVSLEDLNTHTCLQLVLPDVPSGQWIFDGPDAQVFRHTRSTPLTVNVAEALAEAIREGMGIG
PLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFLRENVPIQLAEQERELFHRLVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=36.0544217687075, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=31.3993174061433, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=31.740614334471, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=30.7167235494881, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=30.7958477508651, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787128, Length=303, Percent_Identity=25.4125412541254, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=28.6689419795222, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI157672245, Length=144, Percent_Identity=32.6388888888889, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=24, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=30.5970149253731, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789173, Length=189, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=26.3513513513513, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787879, Length=159, Percent_Identity=31.4465408805031, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693105, Length=123, Percent_Identity=26.8292682926829, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082132, Length=304, Percent_Identity=23.6842105263158, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34717; Mature: 34717

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERYLQRCEQILEYVGLAEAEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPD
HHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCHH
VLIDLVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIGTTCTVLCASPQYLSKRGMPV
HHHHHHHHHHCHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCCCE
SLEDLNTHTCLQLVLPDVPSGQWIFDGPDAQVFRHTRSTPLTVNVAEALAEAIREGMGIG
EHHHCCHHHHHHHHCCCCCCCCEEEECCCHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCC
PLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFLRENVPIQLA
CCCHHHHHHCCCCCCEEEEECCCEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEH
EQERELFHRLVN
HHHHHHHHHHCC
>Mature Secondary Structure
MDTLENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERYLQRCEQILEYVGLAEAEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPD
HHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCHH
VLIDLVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIGTTCTVLCASPQYLSKRGMPV
HHHHHHHHHHCHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCCCE
SLEDLNTHTCLQLVLPDVPSGQWIFDGPDAQVFRHTRSTPLTVNVAEALAEAIREGMGIG
EHHHCCHHHHHHHHCCCCCCCCEEEECCCHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCC
PLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFLRENVPIQLA
CCCHHHHHHCCCCCCEEEEECCCEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEH
EQERELFHRLVN
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]