| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is rmlA1 [H]
Identifier: 91782109
GI number: 91782109
Start: 821069
End: 821962
Strand: Direct
Name: rmlA1 [H]
Synonym: Bxe_A3726
Alternate gene names: 91782109
Gene position: 821069-821962 (Clockwise)
Preceding gene: 91782108
Following gene: 91782110
Centisome position: 16.77
GC content: 60.18
Gene sequence:
>894_bases ATGGCGCGTAAAGGCATTATTCTCGCGGGCGGCTCGGGCACGCGCCTGTATCCGATCACGCACGTCGTCTCCAAGCAGTT GCTGCCGGTGTACGACAAACCGATGATCTACTACCCGCTGTCCACGCTGATGGTGGCGGGCATCCGCGACGTACTGATCA TTTCGACGCCGCAGGACACGCCGCGCTTCGAGGCGATGCTCGGCGACGGCAGCCAGTGGGGGATGAACATCCGGTATGCG GTGCAGCCTTCGCCGGACGGTCTCGCGCAGGCATTTATTATCGGTCGCGACTTTGTGGGCAACGATCCGTCGGCGCTGAT TCTGGGCGACAACATCTTCTACGGTCACGATCTGGCGAAGCAGCTGGAAAACGCCGACGGGAAAACGGAAGGCGCGACCG TCTTTGCGTACCACGTGCAGGACCCGGAACGGTATGGCGTGGTGGAATTCGACCGGCAGTTCCGCGCGCTGTCGATCGAG GAGAAGCCCGTGAAGCCGCGTTCGAACTACGCGGTCACGGGTCTGTACTTCTACGACAACCAGGTCTGCGATATCGCCGC CGACATCAAGCCGTCGCCGCGTGGCGAGCTCGAAATCACCGACGTCAACTCGCGGTATCTCGCCAATGCGGCGCTCAATG TCGAGATCATGGGGCGCGGTTATGCCTGGCTCGATACCGGCACGCATGATTCGCTGATCGAGGCGGCGACGTTCATCGAA ACACTGCAGAAACGTCAAGGTCTGGTGGTGGCGTGTCCGGAAGAGATTGCGTTCCGCCAACAGTGGATCGATGAGGAGAG GTTGCTTCAACTTGCGAAGCCACTTTCCAAGAATGCGTATGGCCAATATCTGCTCAATCTTCCGCAAGATCAGGTGGCAT GGCCGGCCCGTTGA
Upstream 100 bases:
>100_bases TGGTATCTGGACAATCAGGCGTGGTCGAACGAAGTCGCCTCGGGCGAGTACCGCAAGTGGGTTGAGACCAACTACGCGCA GCGCGCGTAAGGGCAAGGCA
Downstream 100 bases:
>100_bases TCCGGGTGATCGAATGGGGCAAGCGTTTGCGCTGTCCTTGCAATAGCCGATACGTAACTTGCGGAACGTGCGCCGGCGCA CATTTAATTTGAAACTGCGC
Product: glucose-1-phosphate thymidylyltransferase
Products: NA
Alternate protein names: G1P-TT 1; dTDP-glucose pyrophosphorylase 1; dTDP-glucose synthase 1 [H]
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MARKGIILAGGSGTRLYPITHVVSKQLLPVYDKPMIYYPLSTLMVAGIRDVLIISTPQDTPRFEAMLGDGSQWGMNIRYA VQPSPDGLAQAFIIGRDFVGNDPSALILGDNIFYGHDLAKQLENADGKTEGATVFAYHVQDPERYGVVEFDRQFRALSIE EKPVKPRSNYAVTGLYFYDNQVCDIAADIKPSPRGELEITDVNSRYLANAALNVEIMGRGYAWLDTGTHDSLIEAATFIE TLQKRQGLVVACPEEIAFRQQWIDEERLLQLAKPLSKNAYGQYLLNLPQDQVAWPAR
Sequences:
>Translated_297_residues MARKGIILAGGSGTRLYPITHVVSKQLLPVYDKPMIYYPLSTLMVAGIRDVLIISTPQDTPRFEAMLGDGSQWGMNIRYA VQPSPDGLAQAFIIGRDFVGNDPSALILGDNIFYGHDLAKQLENADGKTEGATVFAYHVQDPERYGVVEFDRQFRALSIE EKPVKPRSNYAVTGLYFYDNQVCDIAADIKPSPRGELEITDVNSRYLANAALNVEIMGRGYAWLDTGTHDSLIEAATFIE TLQKRQGLVVACPEEIAFRQQWIDEERLLQLAKPLSKNAYGQYLLNLPQDQVAWPAR >Mature_296_residues ARKGIILAGGSGTRLYPITHVVSKQLLPVYDKPMIYYPLSTLMVAGIRDVLIISTPQDTPRFEAMLGDGSQWGMNIRYAV QPSPDGLAQAFIIGRDFVGNDPSALILGDNIFYGHDLAKQLENADGKTEGATVFAYHVQDPERYGVVEFDRQFRALSIEE KPVKPRSNYAVTGLYFYDNQVCDIAADIKPSPRGELEITDVNSRYLANAALNVEIMGRGYAWLDTGTHDSLIEAATFIET LQKRQGLVVACPEEIAFRQQWIDEERLLQLAKPLSKNAYGQYLLNLPQDQVAWPAR
Specific function: Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis [H]
COG id: COG1209
COG function: function code M; dTDP-glucose pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-1-phosphate thymidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1788351, Length=288, Percent_Identity=71.875, Blast_Score=443, Evalue=1e-126, Organism=Escherichia coli, GI1790224, Length=284, Percent_Identity=64.0845070422535, Blast_Score=394, Evalue=1e-111, Organism=Escherichia coli, GI1787488, Length=237, Percent_Identity=27.4261603375527, Blast_Score=69, Evalue=3e-13, Organism=Caenorhabditis elegans, GI133931050, Length=182, Percent_Identity=24.7252747252747, Blast_Score=72, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6320148, Length=248, Percent_Identity=27.8225806451613, Blast_Score=80, Evalue=3e-16, Organism=Drosophila melanogaster, GI21355443, Length=247, Percent_Identity=21.8623481781377, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24644084, Length=247, Percent_Identity=21.8623481781377, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005907 - InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.24 [H]
Molecular weight: Translated: 33129; Mature: 32998
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKGIILAGGSGTRLYPITHVVSKQLLPVYDKPMIYYPLSTLMVAGIRDVLIISTPQDT CCCCCEEEECCCCCEEEEHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCEEEEEECCCCC PRFEAMLGDGSQWGMNIRYAVQPSPDGLAQAFIIGRDFVGNDPSALILGDNIFYGHDLAK CCEEEEECCCCCCCEEEEEEECCCCCHHHEEEEEECCCCCCCCCEEEEECCEEECHHHHH QLENADGKTEGATVFAYHVQDPERYGVVEFDRQFRALSIEEKPVKPRSNYAVTGLYFYDN HHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEEEEECC QVCDIAADIKPSPRGELEITDVNSRYLANAALNVEIMGRGYAWLDTGTHDSLIEAATFIE CEEEEEECCCCCCCCCEEEEECCCEEEEEEEEEEEEEECCEEEEECCCCHHHHHHHHHHH TLQKRQGLVVACPEEIAFRQQWIDEERLLQLAKPLSKNAYGQYLLNLPQDQVAWPAR HHHHHCCEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHEEECCHHHCCCCCC >Mature Secondary Structure ARKGIILAGGSGTRLYPITHVVSKQLLPVYDKPMIYYPLSTLMVAGIRDVLIISTPQDT CCCCEEEECCCCCEEEEHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCEEEEEECCCCC PRFEAMLGDGSQWGMNIRYAVQPSPDGLAQAFIIGRDFVGNDPSALILGDNIFYGHDLAK CCEEEEECCCCCCCEEEEEEECCCCCHHHEEEEEECCCCCCCCCEEEEECCEEECHHHHH QLENADGKTEGATVFAYHVQDPERYGVVEFDRQFRALSIEEKPVKPRSNYAVTGLYFYDN HHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEEEEECC QVCDIAADIKPSPRGELEITDVNSRYLANAALNVEIMGRGYAWLDTGTHDSLIEAATFIE CEEEEEECCCCCCCCCEEEEECCCEEEEEEEEEEEEEECCEEEEECCCCHHHHHHHHHHH TLQKRQGLVVACPEEIAFRQQWIDEERLLQLAKPLSKNAYGQYLLNLPQDQVAWPAR HHHHHCCEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHEEECCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7517391; 9097040; 9278503; 7517390 [H]