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The map label for this gene is nudD [H]

Identifier: 91781972

GI number: 91781972

Start: 662449

End: 662901

Strand: Reverse

Name: nudD [H]

Synonym: Bxe_A3872

Alternate gene names: 91781972

Gene position: 662901-662449 (Counterclockwise)

Preceding gene: 91781973

Following gene: 91781971

Centisome position: 13.54

GC content: 66.89

Gene sequence:

>453_bases
ATGCTGACCGAGATCGATTTCCTGGACGTGGTCCGTCTCACGCCTCTGGTCGCGTTCGATCTGATCGTCAGCGATGCGCG
CGGGCGCGTGCTGATCGGCCGCCGCCGTAACCGCCCCGCTCGCGGCACCTGGTTCGTTCCCGGCGGCCGCATTCACAAAG
GCGAAACGCTCGACGCCGCTTTCGCGCGCATTGCCGATGCGGAGTTGGGCATCGCGAATCTGGCGCGCTCGGCGGCCCGC
TTCGAAGGCGTGTTCGAACATCACTACAGCGACAACTTCGCGGGCGAGCCGGACGTGTCGACTCACTACATCGTGCTCGC
CTATGCGCTCACGCTCGCGGGCACGGCGCCGCCCGGACGCCCCGAGCAGCACAGCGAATATGCGTGGCTCGCGCCCGCGG
AACTGCTGGCGCGCGCGGACGTCCACGACAACACCAAAGCCTATTTCCGCTAA

Upstream 100 bases:

>100_bases
CACCATCGCGACTACTAGCGAATCGTGACGAACGCCCAATGCCGCTTCGAGGCCGCCCGAAACAGGCACGCCCGGCGGCG
CGGCAAACGCGGGAGAAAAC

Downstream 100 bases:

>100_bases
AGCGCGAGCAGGCAGGCGCGCGTGCCTGCGTTCATGCCGGACTGCAATGTGGCGCCGACTGTGAGTTCGGTAACGTGACG
GCCAGGGCCGCTACAGTATG

Product: putative GDP-mannose mannosyl hydrolase

Products: GDP; mannose [C]

Alternate protein names: GDPMH; Colanic acid biosynthesis protein wcaH [H]

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MLTEIDFLDVVRLTPLVAFDLIVSDARGRVLIGRRRNRPARGTWFVPGGRIHKGETLDAAFARIADAELGIANLARSAAR
FEGVFEHHYSDNFAGEPDVSTHYIVLAYALTLAGTAPPGRPEQHSEYAWLAPAELLARADVHDNTKAYFR

Sequences:

>Translated_150_residues
MLTEIDFLDVVRLTPLVAFDLIVSDARGRVLIGRRRNRPARGTWFVPGGRIHKGETLDAAFARIADAELGIANLARSAAR
FEGVFEHHYSDNFAGEPDVSTHYIVLAYALTLAGTAPPGRPEQHSEYAWLAPAELLARADVHDNTKAYFR
>Mature_150_residues
MLTEIDFLDVVRLTPLVAFDLIVSDARGRVLIGRRRNRPARGTWFVPGGRIHKGETLDAAFARIADAELGIANLARSAAR
FEGVFEHHYSDNFAGEPDVSTHYIVLAYALTLAGTAPPGRPEQHSEYAWLAPAELLARADVHDNTKAYFR

Specific function: It could participate in the regulation of cell wall biosynthesis by influencing the concentration of GDP-mannose or GDP-glucose in the cell. May be involved in the degradation of GDP-mannose and GDP-glucose, diverting the GDP to the synthesis of GDP-fucos

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI87082031, Length=149, Percent_Identity=49.6644295302013, Blast_Score=146, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021161
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: NA

Molecular weight: Translated: 16599; Mature: 16599

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTEIDFLDVVRLTPLVAFDLIVSDARGRVLIGRRRNRPARGTWFVPGGRIHKGETLDAA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCEEECCCCHHHH
FARIADAELGIANLARSAARFEGVFEHHYSDNFAGEPDVSTHYIVLAYALTLAGTAPPGR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
PEQHSEYAWLAPAELLARADVHDNTKAYFR
CCCCCCEEEECHHHHHHHCCCCCCCHHHCC
>Mature Secondary Structure
MLTEIDFLDVVRLTPLVAFDLIVSDARGRVLIGRRRNRPARGTWFVPGGRIHKGETLDAA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCEEECCCCHHHH
FARIADAELGIANLARSAARFEGVFEHHYSDNFAGEPDVSTHYIVLAYALTLAGTAPPGR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
PEQHSEYAWLAPAELLARADVHDNTKAYFR
CCCCCCEEEECHHHHHHHCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDP-mannose; H2O [C]

Specific reaction: GDP-mannose + H2O = GDP + mannose [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]