| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yyaJ [H]
Identifier: 91781755
GI number: 91781755
Start: 410217
End: 411632
Strand: Reverse
Name: yyaJ [H]
Synonym: Bxe_A4090
Alternate gene names: 91781755
Gene position: 411632-410217 (Counterclockwise)
Preceding gene: 91781764
Following gene: 91781754
Centisome position: 8.41
GC content: 63.77
Gene sequence:
>1416_bases ATGTACATGGAAAAGGAGATTGCCGGCACGGCCGGCGTGCAAGCAAGCGTTTCGGCGCGGCTCGACCGCCTGCCCCCGAC GCGCTATTTCAGCGGCCTCGTCGCACGCATCGCGATCGGCGGCTGGTTCGAGTTTTATGAAATGTTCATGGCGGCCTATA TCTCACTGGGACTCATCAGCAGCGGCCTGTATCGCGCCACCACGGCCGGCCTGTTCGACGTCGACGGCTTCGCCAGCTTT CTCGGCTCGTTTTTCGCCGGAATGTTCGTGGGCACGGTGGCGCTCGGCGGCTTCACCGACCGCTTCGGACGCCGCGCCGT ATTCACCTGCGCAATGCTGATCTATTCGGTCGCGACCTTCGCCGCGGCGTTCCAGCATTCGCCGCAAGCGATGGATCTCT GGCGCTTCGTCGCGGGCCTCGGCATCGGCGTGCAGCTCATTACTGTCGACACTTATATTTCCGAGCTCACGCCGCATCAC ACCCGCGGCCGCTACAGCGCGTTCAGCATCCTCGTGATCCTGACTTCCGTGCCGACCGTCGCCGTACTGTCGTTTCTGCT CGTGCCGCACACCATCCTAGGTCTCGAGGGTTGGCGCTGGGTGATGATCATCGGCTCGGCGGGCGCCGTGCTGATCTGGT TCATGCGGCGCGGCCTTCCGGAGTCGCCGCGCTGGCTCGAAAGCAAAGGCCGGCTCGACGAAGCGCGCGCGATCGTCGAC GCGATCGAGGCTCGCGTGGTCGCGGAAACCGGCCGCGCATTGCAGGCGCCGGCACAGCGCGCGCCGCAACCGTTGACCGG CGAGCACGGCGGTTCCTGGTCGGAGATGTGGAAAGGCCGCTATCTGAGCCGCACCATCATGCTGTCGTTCTTCAACTTCT TCCAGACCTTCGGCGTGTACGGCTTCGGCGCGTGGGTGCCGGTGCTGCTGTACACGAAAGGCATCACGATCACGCATTCG CTGCTCTACACGATGGTGATCGCGTTCGCGACGCCGCTAGGCGCGCTCGGTGCGATGGCGTGTGCGGAGCGCATCCAGCG CAAGTGGCAACTGGTCGGCTGCGCGATCGTCGTGGCGGTGGCCGGCGTACTGTTCGGCATGGTGCGCGAGCCGTTGCTGA TCCTGCTGTTCGGCAGCGCCGTGACCATCGCGAACAACTGGCTGATCGGTATCTTTCACACCTATCAGGCCGAGCTGTAT CCGACCCGGATTCGCGCCCGCGCCGTCGGTTTCGTGTTTAGCTGGAGCCGTCTGAGTTCGATCTTCGTCGGTTTCTGGGT GGCGGCATTGCTCAAGCATTCGGGCGTGCCCGCCGTGTTCGTGCTGATTTCGTCAGCCATGTTCGTGATCGTCGTGATGG TCGGGCTGCTAGGGCCGAAGACCAACGGCATTCGTCTGGAGGAGTTGTCTCAATGA
Upstream 100 bases:
>100_bases GTTAATAGAATTTCACTTGAAATATGCCGATGATTCGTCCTACACTTGCCAAAAGTGTCGACACTATCAATATAGGACAT CAGTCCAGCCAGGAGACGGC
Downstream 100 bases:
>100_bases GTTCCATCGCCGCCGCATTCGCGCACGGCCTTTTCGCACTGGCGCAGCGTCCGCTGCCGGTTCCGGTCGCAGAGGAAGCC AGGCGTTCGCTGATCAATGT
Product: major facilitator superfamily metabolite(sugar)/H(+) symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 471
Protein sequence:
>471_residues MYMEKEIAGTAGVQASVSARLDRLPPTRYFSGLVARIAIGGWFEFYEMFMAAYISLGLISSGLYRATTAGLFDVDGFASF LGSFFAGMFVGTVALGGFTDRFGRRAVFTCAMLIYSVATFAAAFQHSPQAMDLWRFVAGLGIGVQLITVDTYISELTPHH TRGRYSAFSILVILTSVPTVAVLSFLLVPHTILGLEGWRWVMIIGSAGAVLIWFMRRGLPESPRWLESKGRLDEARAIVD AIEARVVAETGRALQAPAQRAPQPLTGEHGGSWSEMWKGRYLSRTIMLSFFNFFQTFGVYGFGAWVPVLLYTKGITITHS LLYTMVIAFATPLGALGAMACAERIQRKWQLVGCAIVVAVAGVLFGMVREPLLILLFGSAVTIANNWLIGIFHTYQAELY PTRIRARAVGFVFSWSRLSSIFVGFWVAALLKHSGVPAVFVLISSAMFVIVVMVGLLGPKTNGIRLEELSQ
Sequences:
>Translated_471_residues MYMEKEIAGTAGVQASVSARLDRLPPTRYFSGLVARIAIGGWFEFYEMFMAAYISLGLISSGLYRATTAGLFDVDGFASF LGSFFAGMFVGTVALGGFTDRFGRRAVFTCAMLIYSVATFAAAFQHSPQAMDLWRFVAGLGIGVQLITVDTYISELTPHH TRGRYSAFSILVILTSVPTVAVLSFLLVPHTILGLEGWRWVMIIGSAGAVLIWFMRRGLPESPRWLESKGRLDEARAIVD AIEARVVAETGRALQAPAQRAPQPLTGEHGGSWSEMWKGRYLSRTIMLSFFNFFQTFGVYGFGAWVPVLLYTKGITITHS LLYTMVIAFATPLGALGAMACAERIQRKWQLVGCAIVVAVAGVLFGMVREPLLILLFGSAVTIANNWLIGIFHTYQAELY PTRIRARAVGFVFSWSRLSSIFVGFWVAALLKHSGVPAVFVLISSAMFVIVVMVGLLGPKTNGIRLEELSQ >Mature_471_residues MYMEKEIAGTAGVQASVSARLDRLPPTRYFSGLVARIAIGGWFEFYEMFMAAYISLGLISSGLYRATTAGLFDVDGFASF LGSFFAGMFVGTVALGGFTDRFGRRAVFTCAMLIYSVATFAAAFQHSPQAMDLWRFVAGLGIGVQLITVDTYISELTPHH TRGRYSAFSILVILTSVPTVAVLSFLLVPHTILGLEGWRWVMIIGSAGAVLIWFMRRGLPESPRWLESKGRLDEARAIVD AIEARVVAETGRALQAPAQRAPQPLTGEHGGSWSEMWKGRYLSRTIMLSFFNFFQTFGVYGFGAWVPVLLYTKGITITHS LLYTMVIAFATPLGALGAMACAERIQRKWQLVGCAIVVAVAGVLFGMVREPLLILLFGSAVTIANNWLIGIFHTYQAELY PTRIRARAVGFVFSWSRLSSIFVGFWVAALLKHSGVPAVFVLISSAMFVIVVMVGLLGPKTNGIRLEELSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI166064021, Length=397, Percent_Identity=23.6775818639798, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI203098995, Length=156, Percent_Identity=31.4102564102564, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI166197673, Length=375, Percent_Identity=25.6, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI4506999, Length=414, Percent_Identity=24.3961352657005, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI262399383, Length=261, Percent_Identity=22.2222222222222, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI7662270, Length=261, Percent_Identity=22.2222222222222, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1788074, Length=470, Percent_Identity=29.3617021276596, Blast_Score=159, Evalue=5e-40, Organism=Escherichia coli, GI1788068, Length=469, Percent_Identity=26.6524520255864, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI87082159, Length=411, Percent_Identity=27.7372262773723, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1786229, Length=437, Percent_Identity=25.1716247139588, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1790463, Length=433, Percent_Identity=24.4803695150115, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI87082231, Length=163, Percent_Identity=28.2208588957055, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1789207, Length=273, Percent_Identity=24.5421245421245, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565978, Length=292, Percent_Identity=25, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560496, Length=400, Percent_Identity=23.75, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323653, Length=438, Percent_Identity=23.7442922374429, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6321100, Length=419, Percent_Identity=23.6276849642005, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640198, Length=442, Percent_Identity=23.9819004524887, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24640196, Length=442, Percent_Identity=23.9819004524887, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24640200, Length=442, Percent_Identity=23.9819004524887, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI19922616, Length=416, Percent_Identity=25.2403846153846, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 51574; Mature: 51574
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMEKEIAGTAGVQASVSARLDRLPPTRYFSGLVARIAIGGWFEFYEMFMAAYISLGLIS CCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGLYRATTAGLFDVDGFASFLGSFFAGMFVGTVALGGFTDRFGRRAVFTCAMLIYSVATF CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH AAAFQHSPQAMDLWRFVAGLGIGVQLITVDTYISELTPHHTRGRYSAFSILVILTSVPTV HHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHH AVLSFLLVPHTILGLEGWRWVMIIGSAGAVLIWFMRRGLPESPRWLESKGRLDEARAIVD HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHH AIEARVVAETGRALQAPAQRAPQPLTGEHGGSWSEMWKGRYLSRTIMLSFFNFFQTFGVY HHHHHHHHHCCCHHHCCHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC GFGAWVPVLLYTKGITITHSLLYTMVIAFATPLGALGAMACAERIQRKWQLVGCAIVVAV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGVLFGMVREPLLILLFGSAVTIANNWLIGIFHTYQAELYPTRIRARAVGFVFSWSRLSS HHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH IFVGFWVAALLKHSGVPAVFVLISSAMFVIVVMVGLLGPKTNGIRLEELSQ HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHCCCC >Mature Secondary Structure MYMEKEIAGTAGVQASVSARLDRLPPTRYFSGLVARIAIGGWFEFYEMFMAAYISLGLIS CCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGLYRATTAGLFDVDGFASFLGSFFAGMFVGTVALGGFTDRFGRRAVFTCAMLIYSVATF CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH AAAFQHSPQAMDLWRFVAGLGIGVQLITVDTYISELTPHHTRGRYSAFSILVILTSVPTV HHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHH AVLSFLLVPHTILGLEGWRWVMIIGSAGAVLIWFMRRGLPESPRWLESKGRLDEARAIVD HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHH AIEARVVAETGRALQAPAQRAPQPLTGEHGGSWSEMWKGRYLSRTIMLSFFNFFQTFGVY HHHHHHHHHCCCHHHCCHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC GFGAWVPVLLYTKGITITHSLLYTMVIAFATPLGALGAMACAERIQRKWQLVGCAIVVAV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGVLFGMVREPLLILLFGSAVTIANNWLIGIFHTYQAELYPTRIRARAVGFVFSWSRLSS HHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH IFVGFWVAALLKHSGVPAVFVLISSAMFVIVVMVGLLGPKTNGIRLEELSQ HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]