| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
Click here to switch to the map view.
The map label for this gene is yxeQ [H]
Identifier: 91781754
GI number: 91781754
Start: 408865
End: 410220
Strand: Reverse
Name: yxeQ [H]
Synonym: Bxe_A4091
Alternate gene names: 91781754
Gene position: 410220-408865 (Counterclockwise)
Preceding gene: 91781755
Following gene: 91781753
Centisome position: 8.38
GC content: 68.73
Gene sequence:
>1356_bases ATGAGTTCCATCGCCGCCGCATTCGCGCACGGCCTTTTCGCACTGGCGCAGCGTCCGCTGCCGGTTCCGGTCGCAGAGGA AGCCAGGCGTTCGCTGATCAATGTCATCGGCACCTCGATCGGTGCGTCGCGGCATCCGGGGGTCGACGCGATCCTCGCCG CAGCCGCGGAACTGGGCGTGGCCCCGGTCGCGCCGGTGCCGGGCCGCAGCGAAAAGGTCGACCTGCATTTTTCGGCACTC GCGACCGGCTTTGCCGGCCACCTCGACGATTTCGACGACACGCATCTCGCGACCGTCATCCATCCGGCCGCCTCGGTGCT CGCCGTGCTGACCGCCCTCGCGCCGTCAGCGCGGCCCACCGGCGCGGCCGCGCTGACGGCGTTCACGCTCGGCTGCGAAG CGCAGTTGCGGGTCGGCGTATCGATCTCGCCGGAACACTACGACCGTGGCTGGCACATCACCGGCACGTGCGGCGTGATC GGCTGCGCGGTGACGGCCGCGCTGCTGCTCGGCCTCGACGAAGCGCAGTTGGCGCAAGCGGTCTCGATCGCCGCCTCGAT GTTCGTCGGCCAGCGCGAAGCGTTCGGCACGATGACCAAGCCCTATCACCCCGGCAAGGCGGCGGCGAACGGCATTGCGG CCGCGCGTCTCGCGCAGCAGGGCCAGCGCGCCGCCGCCGACATTTTCGAAGCCGCCGGCGGCTACTCGCATTCGCTGTCG ACGAAGGTCGATTTCGATCTGATGAACGGCGCGTTCGGCGAGCGCTGGGAACTGCTTTTCAACACGTACAAGCCGTATCC GTGCGGGATCGTCGCACATCCGGCAATCGATGCGGGCCTCGCGCTCGCGCCGCGGATCGCCGACGTGCAGTCGATCGAGT CGATCACGCTGCGCTGCCATCCGCTCGTGCCCGAACTGATGGGTAACCCGCAGCCGAAAGACGGCCTGCAGGCGCGCTTC AGCGCGATTCACGGCGTGGCCGCCGCGCTGTGCGACGGCCAGGTGGGTCTCGCGCAATACGAAGACGCACGCGTGGTGCG GGACGACGTCACCGCAGTGCGCGCGCTGACGAAGCTGGCGCCCGACGCGGCGGTCAACCGCGACGAGGTCTTTATCACGG CGACGCTGAAAGACGGCACGCTCGTCGAGCATCACGTCGAACATGCGCGCGGCAGCCTTGCGCGCCCGTTGACCAACGAC GAACTGATGCACAAGGTCCGTCTGCTGGTGGATTCGCAATTGGGCGACGGCACCGCCGCGCAGCTTGCCGCCGCCGTGGC GACGCTGGACACCGCCGCCAATCTCGACGCGCTCTTCGCCCTGTGCGCGCCGACACGCTCTCGCAATGGAAACTGA
Upstream 100 bases:
>100_bases CCGTGTTCGTGCTGATTTCGTCAGCCATGTTCGTGATCGTCGTGATGGTCGGGCTGCTAGGGCCGAAGACCAACGGCATT CGTCTGGAGGAGTTGTCTCA
Downstream 100 bases:
>100_bases TCATGCATAACGCCGCTCAACATTCCGTCGTCTCCGACGCGCTCGCCGGCTTCGCCGTCGCCGCGCTGCCCGCTTCGGCC GAGTCCGCGCTCGGCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 451; Mature: 450
Protein sequence:
>451_residues MSSIAAAFAHGLFALAQRPLPVPVAEEARRSLINVIGTSIGASRHPGVDAILAAAAELGVAPVAPVPGRSEKVDLHFSAL ATGFAGHLDDFDDTHLATVIHPAASVLAVLTALAPSARPTGAAALTAFTLGCEAQLRVGVSISPEHYDRGWHITGTCGVI GCAVTAALLLGLDEAQLAQAVSIAASMFVGQREAFGTMTKPYHPGKAAANGIAAARLAQQGQRAAADIFEAAGGYSHSLS TKVDFDLMNGAFGERWELLFNTYKPYPCGIVAHPAIDAGLALAPRIADVQSIESITLRCHPLVPELMGNPQPKDGLQARF SAIHGVAAALCDGQVGLAQYEDARVVRDDVTAVRALTKLAPDAAVNRDEVFITATLKDGTLVEHHVEHARGSLARPLTND ELMHKVRLLVDSQLGDGTAAQLAAAVATLDTAANLDALFALCAPTRSRNGN
Sequences:
>Translated_451_residues MSSIAAAFAHGLFALAQRPLPVPVAEEARRSLINVIGTSIGASRHPGVDAILAAAAELGVAPVAPVPGRSEKVDLHFSAL ATGFAGHLDDFDDTHLATVIHPAASVLAVLTALAPSARPTGAAALTAFTLGCEAQLRVGVSISPEHYDRGWHITGTCGVI GCAVTAALLLGLDEAQLAQAVSIAASMFVGQREAFGTMTKPYHPGKAAANGIAAARLAQQGQRAAADIFEAAGGYSHSLS TKVDFDLMNGAFGERWELLFNTYKPYPCGIVAHPAIDAGLALAPRIADVQSIESITLRCHPLVPELMGNPQPKDGLQARF SAIHGVAAALCDGQVGLAQYEDARVVRDDVTAVRALTKLAPDAAVNRDEVFITATLKDGTLVEHHVEHARGSLARPLTND ELMHKVRLLVDSQLGDGTAAQLAAAVATLDTAANLDALFALCAPTRSRNGN >Mature_450_residues SSIAAAFAHGLFALAQRPLPVPVAEEARRSLINVIGTSIGASRHPGVDAILAAAAELGVAPVAPVPGRSEKVDLHFSALA TGFAGHLDDFDDTHLATVIHPAASVLAVLTALAPSARPTGAAALTAFTLGCEAQLRVGVSISPEHYDRGWHITGTCGVIG CAVTAALLLGLDEAQLAQAVSIAASMFVGQREAFGTMTKPYHPGKAAANGIAAARLAQQGQRAAADIFEAAGGYSHSLST KVDFDLMNGAFGERWELLFNTYKPYPCGIVAHPAIDAGLALAPRIADVQSIESITLRCHPLVPELMGNPQPKDGLQARFS AIHGVAAALCDGQVGLAQYEDARVVRDDVTAVRALTKLAPDAAVNRDEVFITATLKDGTLVEHHVEHARGSLARPLTNDE LMHKVRLLVDSQLGDGTAAQLAAAVATLDTAANLDALFALCAPTRSRNGN
Specific function: Unknown
COG id: COG2079
COG function: function code R; Uncharacterized protein involved in propionate catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prpD family [H]
Homologues:
Organism=Homo sapiens, GI310129732, Length=387, Percent_Identity=28.9405684754522, Blast_Score=106, Evalue=4e-23, Organism=Homo sapiens, GI310110533, Length=387, Percent_Identity=28.9405684754522, Blast_Score=106, Evalue=4e-23, Organism=Homo sapiens, GI310123058, Length=387, Percent_Identity=28.9405684754522, Blast_Score=105, Evalue=6e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005656 [H]
Pfam domain/function: PF03972 MmgE_PrpD [H]
EC number: NA
Molecular weight: Translated: 46793; Mature: 46662
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIAAAFAHGLFALAQRPLPVPVAEEARRSLINVIGTSIGASRHPGVDAILAAAAELGV CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC APVAPVPGRSEKVDLHFSALATGFAGHLDDFDDTHLATVIHPAASVLAVLTALAPSARPT CCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC GAAALTAFTLGCEAQLRVGVSISPEHYDRGWHITGTCGVIGCAVTAALLLGLDEAQLAQA CHHHHHHHHCCCCEEEEEEEEECHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHH VSIAASMFVGQREAFGTMTKPYHPGKAAANGIAAARLAQQGQRAAADIFEAAGGYSHSLS HHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TKVDFDLMNGAFGERWELLFNTYKPYPCGIVAHPAIDAGLALAPRIADVQSIESITLRCH CEECHHHHCCCCCHHHHHHHHCCCCCCCCEEECCCHHCCCHHCCCHHHHHHHHHHEEEEC PLVPELMGNPQPKDGLQARFSAIHGVAAALCDGQVGLAQYEDARVVRDDVTAVRALTKLA CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHC PDAAVNRDEVFITATLKDGTLVEHHVEHARGSLARPLTNDELMHKVRLLVDSQLGDGTAA CCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH QLAAAVATLDTAANLDALFALCAPTRSRNGN HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SSIAAAFAHGLFALAQRPLPVPVAEEARRSLINVIGTSIGASRHPGVDAILAAAAELGV CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC APVAPVPGRSEKVDLHFSALATGFAGHLDDFDDTHLATVIHPAASVLAVLTALAPSARPT CCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC GAAALTAFTLGCEAQLRVGVSISPEHYDRGWHITGTCGVIGCAVTAALLLGLDEAQLAQA CHHHHHHHHCCCCEEEEEEEEECHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHH VSIAASMFVGQREAFGTMTKPYHPGKAAANGIAAARLAQQGQRAAADIFEAAGGYSHSLS HHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TKVDFDLMNGAFGERWELLFNTYKPYPCGIVAHPAIDAGLALAPRIADVQSIESITLRCH CEECHHHHCCCCCHHHHHHHHCCCCCCCCEEECCCHHCCCHHCCCHHHHHHHHHHEEEEC PLVPELMGNPQPKDGLQARFSAIHGVAAALCDGQVGLAQYEDARVVRDDVTAVRALTKLA CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHC PDAAVNRDEVFITATLKDGTLVEHHVEHARGSLARPLTNDELMHKVRLLVDSQLGDGTAA CCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH QLAAAVATLDTAANLDALFALCAPTRSRNGN HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]