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The map label for this gene is cydA [H]

Identifier: 91781698

GI number: 91781698

Start: 350089

End: 351696

Strand: Reverse

Name: cydA [H]

Synonym: Bxe_A4148

Alternate gene names: 91781698

Gene position: 351696-350089 (Counterclockwise)

Preceding gene: 91781699

Following gene: 91781697

Centisome position: 7.18

GC content: 62.81

Gene sequence:

>1608_bases
ATGCCCGTTAGCGAAGTCGTAGAACTGTCGCGCCTCCAGTTCGCCATCACGGCGCTTTATCACTTCCTGTTCGTCCCGCT
CACGCTCGGCCTGTCCTGGCTGCTCGTCATCATGGAATCGGTCTACGTGATGACCGGCAAGCAGATCTACAAGGACATGA
CCCAGTTCTGGGGCAAGCTCTTCGGCATCAACTTTGCAATGGGCGTGACCACCGGTCTCACGCTCGAATTCCAGTTCGGC
ACCAACTGGTCGTACTACTCGCACTACGTGGGCGACATTTTCGGCGTGCCGCTCGCCGTCGAAGGCCTGATGGCGTTCTT
CCTCGAATCCACCTTCGTCGGCCTGTTCTTCTTCGGCTGGAAGCGGCTCTCCAGGGTGCAGCACGTGATCGTGACGTTCC
TCGTCGCGCTCGGCTCGAACCTCTCGGCGCTGTGGATTCTGGTGGCCAACGGCTGGATGAACAATCCGGTCGGCGCGACC
TTCAACTACCAGACCATGCGCATGGAACTCGACAGCATCTTCTCCGTGCTGTTCAATCCGGTCGCGCAGGTCAAGTTCGT
GCACACTGTCTCCGCCGGCTACGTGACGGCCTCGATGTTCGTGCTCGGCGTGTCGTCGTGGTATCTGCTCAAGCGCCGCG
ACACCGAATTCGCACTGCGCTCGTTCGCGATCGCCGCCGGTTTCGGCCTTGCGTCCACGCTGTGCGTGATCGTGCTCGGC
GACGAATCCGGCTACCGCACCGGCGAAGTCCAGCAGGTCAAGCTCGCCGCGATCGAATCCGAATGGGAAACCGCGCCCGC
GCCGGCTCCGTTCACGATCATCGGGATTCCGAACCAGAAAGAAGAGCGCACCGACTACGCAATCCGGGTTCCCTACGCGC
TCGGCCTGATCGCCACCCGTTCGCTCGACGAACCCGTGGTCGGCCTGAAAGACCTGATGGTGCGCAACGAAGCGCGCATC
AGGAACGGCATGCTGGCCTACGCCGCGCTGCAGAAGCTCAAACAGGGCGACGTCACCGACGAAGCCAAAGCCGCCTTCGA
CGCGCACAAGCAGGATCTCGGCTACGGCCTGATGCTCAAGCAGTTCACCGCGAACGTCACCGACGCCACGCCGGACCAGA
TCACCCAGGCCGCGAAGAAAACGATCCCGCCGGTGGCGCCCGTGTTCTTCTCGTTCCGGCTGATGGTGGGCCTCGGCATC
CTGTTCCTCGCCACCTTCGTGCTCGCCTTCTGGTTCTGCGCGCAACGCTCGCTGCTGCTGGAAAAGCGCCGCTGGTTCCT
GCGCTGGGCGCTGTGGGCGATTCCGCTGCCCTGGCTCGCGGCCGAATTCGGCTGGATCGTCGCCGAGGTGGGTCGCCAGC
CGTGGACCATCGCGGGCATTCTGCCGACTAACCTGTCGGCCTCGAGTCTGACCGCGGGCGACCTGTATCTGAGTATCGGC
GGCTTCGTGGTGTTCTACACGGTGCTGTTCATCATCGAAATCATGCTGATGTTCAAGTACGCGCGGCTCGGCCCTTCTTC
GCTGCATACGGGCCGCTATCACCACGAACAACCGTCACCGGATCAGCCGCTGGACAACCGGCCGCTGCCGACCAGCACGG
TCGCCTGA

Upstream 100 bases:

>100_bases
TTCAATCATCCTCAGGCGGAAAACATGTCGCTGCCGCCCGAGCAAGTCGCGCAGGCGCTGCTCTCCGTGCCTGCCTCGCA
TCCGTCCCAAGGTGATCAAC

Downstream 100 bases:

>100_bases
TTCGCCGCCACCGAGATTCAAGGGAAAAGATCATCATGGATTATGCAACCCTCAAACTGATCTGGTGGGTACTGATCGGC
GTACTGCTGATCGGCTTCGC

Product: putative cytochrome bd ubiquinol oxidase,subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 535; Mature: 534

Protein sequence:

>535_residues
MPVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKLFGINFAMGVTTGLTLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWKRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGAT
FNYQTMRMELDSIFSVLFNPVAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG
DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATRSLDEPVVGLKDLMVRNEARI
RNGMLAYAALQKLKQGDVTDEAKAAFDAHKQDLGYGLMLKQFTANVTDATPDQITQAAKKTIPPVAPVFFSFRLMVGLGI
LFLATFVLAFWFCAQRSLLLEKRRWFLRWALWAIPLPWLAAEFGWIVAEVGRQPWTIAGILPTNLSASSLTAGDLYLSIG
GFVVFYTVLFIIEIMLMFKYARLGPSSLHTGRYHHEQPSPDQPLDNRPLPTSTVA

Sequences:

>Translated_535_residues
MPVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKLFGINFAMGVTTGLTLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWKRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGAT
FNYQTMRMELDSIFSVLFNPVAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG
DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATRSLDEPVVGLKDLMVRNEARI
RNGMLAYAALQKLKQGDVTDEAKAAFDAHKQDLGYGLMLKQFTANVTDATPDQITQAAKKTIPPVAPVFFSFRLMVGLGI
LFLATFVLAFWFCAQRSLLLEKRRWFLRWALWAIPLPWLAAEFGWIVAEVGRQPWTIAGILPTNLSASSLTAGDLYLSIG
GFVVFYTVLFIIEIMLMFKYARLGPSSLHTGRYHHEQPSPDQPLDNRPLPTSTVA
>Mature_534_residues
PVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKLFGINFAMGVTTGLTLEFQFGT
NWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWKRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGATF
NYQTMRMELDSIFSVLFNPVAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLGD
ESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATRSLDEPVVGLKDLMVRNEARIR
NGMLAYAALQKLKQGDVTDEAKAAFDAHKQDLGYGLMLKQFTANVTDATPDQITQAAKKTIPPVAPVFFSFRLMVGLGIL
FLATFVLAFWFCAQRSLLLEKRRWFLRWALWAIPLPWLAAEFGWIVAEVGRQPWTIAGILPTNLSASSLTAGDLYLSIGG
FVVFYTVLFIIEIMLMFKYARLGPSSLHTGRYHHEQPSPDQPLDNRPLPTSTVA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=515, Percent_Identity=66.0194174757282, Blast_Score=723, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=518, Percent_Identity=55.4054054054054, Blast_Score=581, Evalue=1e-167,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59737; Mature: 59606

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGLTLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
KRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGATFNYQTMRMELDSIFSVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHHHH
VAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG
HHHEEEEEEHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHEEEEEEEE
DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATR
CCCCCCCCCHHEEHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHC
SLDEPVVGLKDLMVRNEARIRNGMLAYAALQKLKQGDVTDEAKAAFDAHKQDLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHH
QFTANVTDATPDQITQAAKKTIPPVAPVFFSFRLMVGLGILFLATFVLAFWFCAQRSLLL
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKRRWFLRWALWAIPLPWLAAEFGWIVAEVGRQPWTIAGILPTNLSASSLTAGDLYLSIG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHH
GFVVFYTVLFIIEIMLMFKYARLGPSSLHTGRYHHEQPSPDQPLDNRPLPTSTVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGLTLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
KRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGATFNYQTMRMELDSIFSVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHHHH
VAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG
HHHEEEEEEHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHEEEEEEEE
DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATR
CCCCCCCCCHHEEHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHC
SLDEPVVGLKDLMVRNEARIRNGMLAYAALQKLKQGDVTDEAKAAFDAHKQDLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHH
QFTANVTDATPDQITQAAKKTIPPVAPVFFSFRLMVGLGILFLATFVLAFWFCAQRSLLL
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKRRWFLRWALWAIPLPWLAAEFGWIVAEVGRQPWTIAGILPTNLSASSLTAGDLYLSIG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHH
GFVVFYTVLFIIEIMLMFKYARLGPSSLHTGRYHHEQPSPDQPLDNRPLPTSTVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]