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The map label for this gene is cydB [H]

Identifier: 91781697

GI number: 91781697

Start: 348917

End: 350053

Strand: Reverse

Name: cydB [H]

Synonym: Bxe_A4149

Alternate gene names: 91781697

Gene position: 350053-348917 (Counterclockwise)

Preceding gene: 91781698

Following gene: 91781696

Centisome position: 7.15

GC content: 65.17

Gene sequence:

>1137_bases
ATGGATTATGCAACCCTCAAACTGATCTGGTGGGTACTGATCGGCGTACTGCTGATCGGCTTCGCACTCACCGACGGCTT
CGACATGGGCGCGGCGATCCTGCTGCCGTTCATCGGCAAGACGGACGCCGAGCGGCGCATCGTCGTCAATACGGTGGGCG
CGACCTGGGAAGGCAATCAGGTCTGGCTCATCACCGCGGGCGGCGCGATGTTCGCCGCGTGGCCGCTGGTGTACGCGGCG
TCGTTTTCCGGCTTCTATTTCGCCATGCTGCTGGTGCTGTTCTCGCTGTTCTTCCGGCCGGTCGGCTTCGACTACCGCAG
CAAGCGTGAGGATCCGCGCTGGCGCAGCGCGTGGGACTGGGCACTGTTCGTCGGCGGCTTCGTGCCGGCTCTCGTGTTCG
GCGTCGCGTTCGGCAACCTGCTGCAAGGCGTGCCGTTCTCGTTCGACACCGATCTGCGCGTGACCTATCACGGCGGCTTC
TTCGCGCTGCTCAACCCGTTCGCGGTGCTGTGCGGGCTCGTCAGCGTGTCGATGCTGGCCGCGCATGGCGCCGCCTTCGT
GAAGATGAAAGCGGACGACATCGTGGCCGAGCGCGCATCGCTCGCGCTGCGGATCGCTTCGTTCGCGGCCGTGGTGCTGT
TCCTGATTGCCGGCGCGCTGATCGCCACGATGATCGGCGGCTATCAGCTGGTCGACGCCGCGCCGCTCGACACGGTGGCC
AATCCGCTGCTCAAGAGCGTGACCGGCGCGCCCGGTTTGTGGCTGGCCAACTACGCGACCTATCCGTGGATGGTGGCCGC
GCCGGTGGCCGGTCTGGCGGGCGGTGTGCTGGCCACGCTGCTCGCGCGCTCGCGCTTCGAGAAGAGCGCCTTTCTGGCGA
CCTCGCTGATGATCATCGGCGTGATCCTCACGGCGGGCTTCTCGATGTTCCCGTTCATCATGCCCTCCTCGCTCGACGGC
CGCAGCAGCCTCACCGTGTGGGATTCCACCTCGAGCCGCATGACGCTGCAGATCATGCTGATCGCCGTGATCGTGTTCCT
GCCGCTCATCCTGATCTATACGAGCTGGGTGTATCGCGTGATGCGCGGCAAGGTGACCGCGGCGGCGCTCGAAGAGAATC
ACCATTCAATGTATTGA

Upstream 100 bases:

>100_bases
ACGAACAACCGTCACCGGATCAGCCGCTGGACAACCGGCCGCTGCCGACCAGCACGGTCGCCTGATTCGCCGCCACCGAG
ATTCAAGGGAAAAGATCATC

Downstream 100 bases:

>100_bases
CCGGCACTACGCCTGACAGGAGTTTGTGATGTGGTATTTCAGTTGGATTCTCGGAATCGGCGTGGCGTTGGCGTTCGGTA
TCATCAACGTGATGTGGCTC

Product: cytochrome bd ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWALFVGGFVPALVFGVAFGNLLQGVPFSFDTDLRVTYHGGF
FALLNPFAVLCGLVSVSMLAAHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIIGVILTAGFSMFPFIMPSSLDG
RSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVMRGKVTAAALEENHHSMY

Sequences:

>Translated_378_residues
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWALFVGGFVPALVFGVAFGNLLQGVPFSFDTDLRVTYHGGF
FALLNPFAVLCGLVSVSMLAAHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIIGVILTAGFSMFPFIMPSSLDG
RSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVMRGKVTAAALEENHHSMY
>Mature_378_residues
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWALFVGGFVPALVFGVAFGNLLQGVPFSFDTDLRVTYHGGF
FALLNPFAVLCGLVSVSMLAAHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIIGVILTAGFSMFPFIMPSSLDG
RSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVMRGKVTAAALEENHHSMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=51.5873015873016, Blast_Score=397, Evalue=1e-112,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=50.3978779840849, Blast_Score=377, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 40996; Mature: 40996

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEECCCEECCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHH
ALFVGGFVPALVFGVAFGNLLQGVPFSFDTDLRVTYHGGFFALLNPFAVLCGLVSVSMLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
HCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHH
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIIG
HHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDGRSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTAAALEENHHSMY
HHCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEECCCEECCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHH
ALFVGGFVPALVFGVAFGNLLQGVPFSFDTDLRVTYHGGFFALLNPFAVLCGLVSVSMLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
HCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHH
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIIG
HHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDGRSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTAAALEENHHSMY
HHCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]