Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 91781504

GI number: 91781504

Start: 144125

End: 145096

Strand: Reverse

Name: rbsC [H]

Synonym: Bxe_A4342

Alternate gene names: 91781504

Gene position: 145096-144125 (Counterclockwise)

Preceding gene: 91781505

Following gene: 91781503

Centisome position: 2.96

GC content: 66.15

Gene sequence:

>972_bases
ATGACGGCCGCGCCGCGCGCCACGGCGGCCACCACCGTGCGCAAATGGCGCCATCTCGCCATGCAGCGCGAAGTGATCGT
TCTGCTCGCGATGGTGCTGTTCAACCTGTTCTTCACGCCGCACTTCTGGTCGCTACAAACCTTCAACGTCAACATGACGC
AGGTGGTGACGATCGTGATCGTCGGCATCGGCATGACGCTGGTGGTGGCGACGGGCGGCATCGATCTGTCGGTGGGCGCC
TCGATGGCGATCTCCGGTGCGCTCGCGCCGATGCTGTTCCTGAACATTGCCGGTCCCGGCGGCATTGCGCTCGCGTTCGT
GCTGCCGGTGCTGGCCGCCGCGTTGTGCGGCGTCTTCAACGGCTTGCTGGTGACGAGGTTATCCGTGCAGCCGATTGTCG
CGACGCTGGTGCTGTTCATTGCCGGCCGCGGCATCGCGCAGGTCGTCACCGACGGCAGCCTGCAGGCGTTCAACACGCCC
GCCTTCCAGTGGATCGCGCTCGGCAAGGTGGCGGGCGTGCCGTTCCAGGTGCTGCTGATGCTCGCGCTGGTCGCCCTGTT
CGTGTGGGTCGTGCGCAAGACGCTGTTCGGCCAGTATCTGCTGATTACCGGCGGCAACGAAAAAGCTGCTTATCTGTGCG
GCGTGCCGACGGCCACCGTGAAGCTGATCGCCTACACGCTGTGTGCGGCGCTCGCGGGACTGGCGGGGTTGATCTCGATC
TCGGTGAATTCGTCCTCGGATGCGAACGTGGTCGGGCTCGGCGTCGAGCTCGATGCGATCGCGGCAGTCGCCGTCGGCGG
CACCGCGCTCACCGGCGGCAAAGCGTATATCGGCGGCACGCTGATCGGCGCGCTGATCATCCAGTTGCTGCGCTACACGC
TGCTCGCGCACGGCATTCCCGACGCGGCGGCGCTGGTGGTCAAGGCCGGCATTATCGTCGCCGCCGTTTATGTGCAGCGG
CGCTCGCGGTAA

Upstream 100 bases:

>100_bases
GCACACATCGAAGACGCGCTGGAGGGCGACCGTCATGGCGCTTAAGCTGCACACCGAAACGTTGCACACCGAGCCGCGGC
TCGGCGAAACCGCCCAGCAG

Downstream 100 bases:

>100_bases
GTCTCGCTAGTTCACGCGCATCAGAGAAAATTCCGGACTCGATACGATGAAAAAGAATCTTCCTATCCTGCTCGCGCTGG
CCGCCCTCGTCGTGTTCGGT

Product: ABC sugar transporter, inner membrane subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MTAAPRATAATTVRKWRHLAMQREVIVLLAMVLFNLFFTPHFWSLQTFNVNMTQVVTIVIVGIGMTLVVATGGIDLSVGA
SMAISGALAPMLFLNIAGPGGIALAFVLPVLAAALCGVFNGLLVTRLSVQPIVATLVLFIAGRGIAQVVTDGSLQAFNTP
AFQWIALGKVAGVPFQVLLMLALVALFVWVVRKTLFGQYLLITGGNEKAAYLCGVPTATVKLIAYTLCAALAGLAGLISI
SVNSSSDANVVGLGVELDAIAAVAVGGTALTGGKAYIGGTLIGALIIQLLRYTLLAHGIPDAAALVVKAGIIVAAVYVQR
RSR

Sequences:

>Translated_323_residues
MTAAPRATAATTVRKWRHLAMQREVIVLLAMVLFNLFFTPHFWSLQTFNVNMTQVVTIVIVGIGMTLVVATGGIDLSVGA
SMAISGALAPMLFLNIAGPGGIALAFVLPVLAAALCGVFNGLLVTRLSVQPIVATLVLFIAGRGIAQVVTDGSLQAFNTP
AFQWIALGKVAGVPFQVLLMLALVALFVWVVRKTLFGQYLLITGGNEKAAYLCGVPTATVKLIAYTLCAALAGLAGLISI
SVNSSSDANVVGLGVELDAIAAVAVGGTALTGGKAYIGGTLIGALIIQLLRYTLLAHGIPDAAALVVKAGIIVAAVYVQR
RSR
>Mature_322_residues
TAAPRATAATTVRKWRHLAMQREVIVLLAMVLFNLFFTPHFWSLQTFNVNMTQVVTIVIVGIGMTLVVATGGIDLSVGAS
MAISGALAPMLFLNIAGPGGIALAFVLPVLAAALCGVFNGLLVTRLSVQPIVATLVLFIAGRGIAQVVTDGSLQAFNTPA
FQWIALGKVAGVPFQVLLMLALVALFVWVVRKTLFGQYLLITGGNEKAAYLCGVPTATVKLIAYTLCAALAGLAGLISIS
VNSSSDANVVGLGVELDAIAAVAVGGTALTGGKAYIGGTLIGALIIQLLRYTLLAHGIPDAAALVVKAGIIVAAVYVQRR
SR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=316, Percent_Identity=37.3417721518987, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI145693214, Length=275, Percent_Identity=38.9090909090909, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=35.3312302839117, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=32.6241134751773, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790524, Length=286, Percent_Identity=32.1678321678322, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI145693152, Length=326, Percent_Identity=27.3006134969325, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787793, Length=264, Percent_Identity=31.8181818181818, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788471, Length=258, Percent_Identity=29.8449612403101, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=33.5766423357664, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33352; Mature: 33220

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAPRATAATTVRKWRHLAMQREVIVLLAMVLFNLFFTPHFWSLQTFNVNMTQVVTIVI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
VGIGMTLVVATGGIDLSVGASMAISGALAPMLFLNIAGPGGIALAFVLPVLAAALCGVFN
HHHHHEEEEEECCCEEECCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHH
GLLVTRLSVQPIVATLVLFIAGRGIAQVVTDGSLQAFNTPAFQWIALGKVAGVPFQVLLM
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEECCCCHHHHHHHHHHCCCCHHHHHH
LALVALFVWVVRKTLFGQYLLITGGNEKAAYLCGVPTATVKLIAYTLCAALAGLAGLISI
HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEE
SVNSSSDANVVGLGVELDAIAAVAVGGTALTGGKAYIGGTLIGALIIQLLRYTLLAHGIP
EECCCCCCCEEEECCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DAAALVVKAGIIVAAVYVQRRSR
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAAPRATAATTVRKWRHLAMQREVIVLLAMVLFNLFFTPHFWSLQTFNVNMTQVVTIVI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
VGIGMTLVVATGGIDLSVGASMAISGALAPMLFLNIAGPGGIALAFVLPVLAAALCGVFN
HHHHHEEEEEECCCEEECCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHH
GLLVTRLSVQPIVATLVLFIAGRGIAQVVTDGSLQAFNTPAFQWIALGKVAGVPFQVLLM
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEECCCCHHHHHHHHHHCCCCHHHHHH
LALVALFVWVVRKTLFGQYLLITGGNEKAAYLCGVPTATVKLIAYTLCAALAGLAGLISI
HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEE
SVNSSSDANVVGLGVELDAIAAVAVGGTALTGGKAYIGGTLIGALIIQLLRYTLLAHGIP
EECCCCCCCEEEECCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DAAALVVKAGIIVAAVYVQRRSR
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]