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The map label for this gene is rbsC [H]

Identifier: 91781503

GI number: 91781503

Start: 143119

End: 144078

Strand: Reverse

Name: rbsC [H]

Synonym: Bxe_A4343

Alternate gene names: 91781503

Gene position: 144078-143119 (Counterclockwise)

Preceding gene: 91781504

Following gene: 91781502

Centisome position: 2.94

GC content: 65.94

Gene sequence:

>960_bases
ATGAAAAAGAATCTTCCTATCCTGCTCGCGCTGGCCGCCCTCGTCGTGTTCGGTCTCGTGCGCTACGAGCATTTCGGCTC
GGCGTACAACATCACGTCGTTCTGGCGCTACAACTCGATGTTCGCGCTCATCTCGGTGGGCATGGCGTTCGTGATCATCA
CGGGCGGCATCGACCTGTCGGTGGGCACGGTGGCCGCGCTGGCGAGCGTCGTCGCCGCGCTGACCAGCGTGTACGGCGGT
TGGGTCGCCGCGCTGGCCGGGTGCGCAGCGGGACTCGCTGTCGGCGTGCTGAACGGACTGATCATCACGCGCCTGAAGAT
CCTGCCGTTTATCGTCACGCTCGCGACAAGCCTCGGCGCGCACGGCGTGGCGCTGCTGCTCGGCAAGAACGATGCGGTGT
CGATCTCCGCGGAATCGAACTTCGGCAACTTCGGGCAGGGCGATCTGTTCGGGCTGCCGATTCCGGGCATCGTCGCCGTG
GTGGCGGCGTTGGCCGGCTGGCTCGCGCTGCGCAGTACACGCTTCGGGCGGCATTCGCTGGCGATCGGCGGCAGCGAGGA
AGCCGCGCGGCTGATGGGCCTGAACGTCGACCGCACTCTCGTGATGGCCTATGCGGTGAGCGGCCTGCTCGCCGGCATGG
CGGGCGTGATCCTCGCCGCGCAGTTCGGCGCGGGACAACCCAACGAAGGCGTCGGCTGGGAGCTGTTCGCCATCTCGGCG
GTCGTGCTCGGCGGCACGTTGCTCACGGGCGGCGAAGGCTCGATCGCGATGACGATTGCCGGCGTATTGCTGCTGGGTCT
GGTGTTCAATCTGCTGAACTTCGAGAACGGGCTGGGCTTTATCAGCTTGTCGGCGTACTGGCAGTCGGTGATTCGCGGCG
TGTTCCTGCTGCTCGTGATCGTGTTGCAGGCTCGAGTGCTGAAACAGCGCGGCAAAAAGCGGGTGGCGGCTCCGGCGTAA

Upstream 100 bases:

>100_bases
GTCAAGGCCGGCATTATCGTCGCCGCCGTTTATGTGCAGCGGCGCTCGCGGTAAGTCTCGCTAGTTCACGCGCATCAGAG
AAAATTCCGGACTCGATACG

Downstream 100 bases:

>100_bases
CCGGCGGGGTGCCGCGGCGTTGCTGATCCATGTCGCGCGATGGCCTCGGCGGCGCGGCGGTTCAGGTTCACCGCCGCTGG
TGTTGACTTTGCGCAATTCG

Product: ABC sugar transporter, inner membrane subunit

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKNLPILLALAALVVFGLVRYEHFGSAYNITSFWRYNSMFALISVGMAFVIITGGIDLSVGTVAALASVVAALTSVYGG
WVAALAGCAAGLAVGVLNGLIITRLKILPFIVTLATSLGAHGVALLLGKNDAVSISAESNFGNFGQGDLFGLPIPGIVAV
VAALAGWLALRSTRFGRHSLAIGGSEEAARLMGLNVDRTLVMAYAVSGLLAGMAGVILAAQFGAGQPNEGVGWELFAISA
VVLGGTLLTGGEGSIAMTIAGVLLLGLVFNLLNFENGLGFISLSAYWQSVIRGVFLLLVIVLQARVLKQRGKKRVAAPA

Sequences:

>Translated_319_residues
MKKNLPILLALAALVVFGLVRYEHFGSAYNITSFWRYNSMFALISVGMAFVIITGGIDLSVGTVAALASVVAALTSVYGG
WVAALAGCAAGLAVGVLNGLIITRLKILPFIVTLATSLGAHGVALLLGKNDAVSISAESNFGNFGQGDLFGLPIPGIVAV
VAALAGWLALRSTRFGRHSLAIGGSEEAARLMGLNVDRTLVMAYAVSGLLAGMAGVILAAQFGAGQPNEGVGWELFAISA
VVLGGTLLTGGEGSIAMTIAGVLLLGLVFNLLNFENGLGFISLSAYWQSVIRGVFLLLVIVLQARVLKQRGKKRVAAPA
>Mature_319_residues
MKKNLPILLALAALVVFGLVRYEHFGSAYNITSFWRYNSMFALISVGMAFVIITGGIDLSVGTVAALASVVAALTSVYGG
WVAALAGCAAGLAVGVLNGLIITRLKILPFIVTLATSLGAHGVALLLGKNDAVSISAESNFGNFGQGDLFGLPIPGIVAV
VAALAGWLALRSTRFGRHSLAIGGSEEAARLMGLNVDRTLVMAYAVSGLLAGMAGVILAAQFGAGQPNEGVGWELFAISA
VVLGGTLLTGGEGSIAMTIAGVLLLGLVFNLLNFENGLGFISLSAYWQSVIRGVFLLLVIVLQARVLKQRGKKRVAAPA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=311, Percent_Identity=37.620578778135, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=37.9421221864952, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082395, Length=337, Percent_Identity=33.8278931750742, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1788896, Length=291, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=33.6391437308869, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789992, Length=380, Percent_Identity=28.1578947368421, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693214, Length=244, Percent_Identity=37.2950819672131, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787794, Length=290, Percent_Identity=31.3793103448276, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787793, Length=306, Percent_Identity=28.1045751633987, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32784; Mature: 32784

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNLPILLALAALVVFGLVRYEHFGSAYNITSFWRYNSMFALISVGMAFVIITGGIDLS
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
VGTVAALASVVAALTSVYGGWVAALAGCAAGLAVGVLNGLIITRLKILPFIVTLATSLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGVALLLGKNDAVSISAESNFGNFGQGDLFGLPIPGIVAVVAALAGWLALRSTRFGRHSL
CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
AIGGSEEAARLMGLNVDRTLVMAYAVSGLLAGMAGVILAAQFGAGQPNEGVGWELFAISA
EECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
VVLGGTLLTGGEGSIAMTIAGVLLLGLVFNLLNFENGLGFISLSAYWQSVIRGVFLLLVI
HHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
VLQARVLKQRGKKRVAAPA
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKNLPILLALAALVVFGLVRYEHFGSAYNITSFWRYNSMFALISVGMAFVIITGGIDLS
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
VGTVAALASVVAALTSVYGGWVAALAGCAAGLAVGVLNGLIITRLKILPFIVTLATSLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGVALLLGKNDAVSISAESNFGNFGQGDLFGLPIPGIVAVVAALAGWLALRSTRFGRHSL
CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
AIGGSEEAARLMGLNVDRTLVMAYAVSGLLAGMAGVILAAQFGAGQPNEGVGWELFAISA
EECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
VVLGGTLLTGGEGSIAMTIAGVLLLGLVFNLLNFENGLGFISLSAYWQSVIRGVFLLLVI
HHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
VLQARVLKQRGKKRVAAPA
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]