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The map label for this gene is degS [H]

Identifier: 91781500

GI number: 91781500

Start: 140367

End: 141233

Strand: Reverse

Name: degS [H]

Synonym: Bxe_A4346

Alternate gene names: 91781500

Gene position: 141233-140367 (Counterclockwise)

Preceding gene: 91781501

Following gene: 91781499

Centisome position: 2.88

GC content: 71.51

Gene sequence:

>867_bases
ATGGATACGTCGACTGTCGTCCCGTTCGCCGCCCATCTTCCCGCGTCATCGGCACGTGAAGGATCCGGCGCGTCCGCTGC
GCCTGCTTCGTCGACCCACCTGGAAATCGAACGGTTGCGCGCCCGGGTGCGCGAACTCTCGGCCGAGCTCGTCCGGGCGC
AGGAAGCCGCTTGCCGTCATGTGGCGCGCGAGTTGCACGATGGCGTAGGCGCCGAGCTGACCGCCACCCGCTTCGCGCTC
GCCGGCGTCGAAACCTGGCTGCCCGCCGATGCCCCGCCGCAGTGTGCCGCCGCGCTCGCCGTGGCGAACCGCTCGCTCGA
TGCCGCGTGCGAAGCCAGCCGCCAGGCTGTCGCGGAACTGCATGCGCCGTCGCTCGAAGCGGGCATTGTCGGCGCGTTGG
CCCACTGGAGCGGCGACTTCGCCGCGCGCACGCAATTGCGCACGAGTTTCATCTGCGCCGCCGACGTGCGCCTCACCCGC
CTGCCCGCCGACGCCGCGCTCGCCGTATTCCGCGTCGCGCAGGAAGCGCTGAACAATATTGCCAAACACGCGCGCGCCGA
ATCCGCCGACGTGCGCATCGAAACCAGCCGCCGCCACCTCACGCTGATCGTGACCGACGACGGCATCGGCGTCACGCGCA
ACGCTGGCGGCCGACACGGCCATTTCGGTCTGAGCGGCATGCAGGCGCGCTGCGCGGCCTTCGACGGCACGCTGCGCGTC
AGCGCACGGCGCGCCGATGCGGAGCGCAACGGCGACGACAGCGGCAACGGCACGCAGTCGCGCGGAACCATCGTTCGCGC
GCGCTTTGCCTGGGACGCCATGCTGGCGCACGCGCCGCGCGCCCGTCGGCACGCCCTGCAATCGTGA

Upstream 100 bases:

>100_bases
CTTGCACCTGGAGGCCTGAGACCCGTATGCGTTCTTTCGTCTTCGCGCCGCCACGGCGTACCCGCTTCGCCGTCCGCATT
GCATTCTGAGAAGGAAGGTC

Downstream 100 bases:

>100_bases
GCGTGACGTCATGAGCCTGCGCATTCTGCTCGTCGATGATCACGCAGTGGTTCGCCAGGGCGTCCGTCAGTTGCTGCTCG
ACCGCGGCGTGGCGCGCGAA

Product: putative signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MDTSTVVPFAAHLPASSAREGSGASAAPASSTHLEIERLRARVRELSAELVRAQEAACRHVARELHDGVGAELTATRFAL
AGVETWLPADAPPQCAAALAVANRSLDAACEASRQAVAELHAPSLEAGIVGALAHWSGDFAARTQLRTSFICAADVRLTR
LPADAALAVFRVAQEALNNIAKHARAESADVRIETSRRHLTLIVTDDGIGVTRNAGGRHGHFGLSGMQARCAAFDGTLRV
SARRADAERNGDDSGNGTQSRGTIVRARFAWDAMLAHAPRARRHALQS

Sequences:

>Translated_288_residues
MDTSTVVPFAAHLPASSAREGSGASAAPASSTHLEIERLRARVRELSAELVRAQEAACRHVARELHDGVGAELTATRFAL
AGVETWLPADAPPQCAAALAVANRSLDAACEASRQAVAELHAPSLEAGIVGALAHWSGDFAARTQLRTSFICAADVRLTR
LPADAALAVFRVAQEALNNIAKHARAESADVRIETSRRHLTLIVTDDGIGVTRNAGGRHGHFGLSGMQARCAAFDGTLRV
SARRADAERNGDDSGNGTQSRGTIVRARFAWDAMLAHAPRARRHALQS
>Mature_288_residues
MDTSTVVPFAAHLPASSAREGSGASAAPASSTHLEIERLRARVRELSAELVRAQEAACRHVARELHDGVGAELTATRFAL
AGVETWLPADAPPQCAAALAVANRSLDAACEASRQAVAELHAPSLEAGIVGALAHWSGDFAARTQLRTSFICAADVRLTR
LPADAALAVFRVAQEALNNIAKHARAESADVRIETSRRHLTLIVTDDGIGVTRNAGGRHGHFGLSGMQARCAAFDGTLRV
SARRADAERNGDDSGNGTQSRGTIVRARFAWDAMLAHAPRARRHALQS

Specific function: Involved in a sensory transduction pathway that affect the production of enzymes that degrade polymeric carbon and nitrogen sources. DegS probably acts as a kinase that phosphorylates degU [H]

COG id: COG4585

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1787474, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR008595
- InterPro:   IPR011712
- InterPro:   IPR005467
- InterPro:   IPR016381 [H]

Pfam domain/function: PF05384 DegS; PF02518 HATPase_c; PF07730 HisKA_3 [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 30393; Mature: 30393

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTSTVVPFAAHLPASSAREGSGASAAPASSTHLEIERLRARVRELSAELVRAQEAACRH
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VARELHDGVGAELTATRFALAGVETWLPADAPPQCAAALAVANRSLDAACEASRQAVAEL
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
HAPSLEAGIVGALAHWSGDFAARTQLRTSFICAADVRLTRLPADAALAVFRVAQEALNNI
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCEEEECCHHHHHHHHHHHHHHHHHH
AKHARAESADVRIETSRRHLTLIVTDDGIGVTRNAGGRHGHFGLSGMQARCAAFDGTLRV
HHHHCCCCCCEEEEECCCEEEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHCCCEEEE
SARRADAERNGDDSGNGTQSRGTIVRARFAWDAMLAHAPRARRHALQS
EEHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MDTSTVVPFAAHLPASSAREGSGASAAPASSTHLEIERLRARVRELSAELVRAQEAACRH
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VARELHDGVGAELTATRFALAGVETWLPADAPPQCAAALAVANRSLDAACEASRQAVAEL
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
HAPSLEAGIVGALAHWSGDFAARTQLRTSFICAADVRLTRLPADAALAVFRVAQEALNNI
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCEEEECCHHHHHHHHHHHHHHHHHH
AKHARAESADVRIETSRRHLTLIVTDDGIGVTRNAGGRHGHFGLSGMQARCAAFDGTLRV
HHHHCCCCCCEEEEECCCEEEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHCCCEEEE
SARRADAERNGDDSGNGTQSRGTIVRARFAWDAMLAHAPRARRHALQS
EEHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]