| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is mrdA [H]
Identifier: 91781445
GI number: 91781445
Start: 76453
End: 78756
Strand: Reverse
Name: mrdA [H]
Synonym: Bxe_A4401
Alternate gene names: 91781445
Gene position: 78756-76453 (Counterclockwise)
Preceding gene: 91781446
Following gene: 91781444
Centisome position: 1.61
GC content: 65.67
Gene sequence:
>2304_bases ATGACCGAATTCAAGGACACCCAGCAACAGCTCTCGAAGTTCCGCCTGCGCGTCGCGGCGGCGGGTCTGTTCGTGTTCGT CTGCTTCGGGCTGATCGGCTTCCGGTTCCTGTTCCTGCAGGTCTGGCACTACAGCAAATACTCGCTGCAAGCCGATGAAA ACCGCATTTCCGTCGCGCCGATCGTACCGAACCGCGGCATCATCACCGACCGCAACGGCGTGGTGCTGGCCAAGAACTAC TCGGCCTACACGCTCGAAATTACGCCCTCGAAGCTGAACGACTCGCTCGAAAACGTGATCGACAACCTGGCCACCGTCGT CTCGATCGACGCGCGCGACCGCCGCCGCTTCAAGAAGCTGCAGGAAGACTCGAAGAACTTCGAGAGCCTGCCCATCCGCA CCCGCCTGACCGACGACGAAGTCGCGCGCTTCACCGCGCAGCGCTTCCGTTTTCCCGGCGTGGAAGTGCGCGCGCGCCTG TTCCGCCAATATCCGCTCGGACCGACGGCGGCGCACGTGATCGGCTACATCGGCCGGATTTCGCAGCGCGATCAGGACCG TATCGACGACGCCAGCGACCAGAACGACAGCGATCCCGACCACTACGATCCGCGGCTGGACGCGAACAACTACAAGGGCA CCGACTACATCGGCAAGATCGGCGTCGAGCAGAGTTACGAGACCGAACTGCACGGCCAGACCGGTTTCGAGGAAGTGGAA GTGACCGCCGGCGGCCGCCCGGTGCGCACCTTGTCGCGCACCCAGGCAACGCCGGGCAACAACCTCGTGCTGTCTTTGGA TATCGGCTTGCAGCAGGTCGCCGAGCAGGCCTTCGCGGGACGGCGCGGCGCGCTGGTCGCCATCGAGCCATCGTCGGGCG ACGTGCTCGCGTTCGTGTCCGCGCCGAGCTTCGATCCCAATTCGTTCGTCGACGGCATCGACCAGCAGACGTGGGACGAT CTCAACAATTCGCCCGACCATCCGCTACTCAACCGGCCGCTGCACGGCACCTATCCGCCCGGCTCGACCTACAAGCCGTT CATGGCGCTCGCCGCGCTCACACTGCATAAGCGCACGCCGGGCTGGGGCTTCCAGGATCCGGGCTCGTACACCTTCGGCG GTCACACGTTCCGCAACGACGTGCGTTCGGGCCAGGGTTGGGTCGACATGAACCGCGCAATCGTGGTGTCGAACGACACG TATTTCTACATGCTCGCGCACGATCTCGGCGTCAACAATATTGCCAACTTCATGAAGCCGTGGGGTTTCGGCCAGATCAC CGGCATCGACATTTCGGGCGAGGCGCGCGGCATCCTGCCGTCCACCGAATGGAAGCGCAAGGCGTACCGCAAGCCCGAAC AGCAACGGTGGTATGAAGGCGAGACGATCAGTCTCGGCATCGGCCAGGGCTACAACTCGTTCACCATTCTCCAGCTTGCT CACGCCACGGCCACACTCGCGAACAACGGTGTCGTGATGAAGCCGCACCTCGTGCGCGACATCGAAAACCCGATCACCAA AGAGACCCGGCCGGTCGTGCGCGATCCGAGCGACAGGATCGCGGTGAAGCAATCGGATATCGACATCATCAAGCGCGCAA TGGTAGGCGTCGTGACCAATGGCACGGCGTCGAAACTATTCGTCGGCGCGCCGTACCAGGCGGCCGGCAAGACCGGCACG GCGCAGGTCTACTCGCTGCAAGGCGCGAACTACAAGGGCCACGCGATCGCCGAACATCTGCGCGACCACGCGCTCTTCAT CGCCTTCGCACCGGCCGAGCAGCCGAAGATCGCGCTCGCGCTGATCGTCGAAAACGGCGGCTGGGGTGCGGAAGCGGCGG GCCCGATCGCGCGGAAGGTGCTCGACTACTACCTCGTCGGCAAGAACAAACCGGGCGCTCAGGCGGCGGCCATCGAGGCA GCGGCATCGGCAACCGAAGACGCGTCCGCGCCCGAAGTCGGCGGCGCACCGGCGCCACAGGAGGCGGTGCAGCCGGTCAA GGTCGCTGCGGGCTTCACTGCCCTGCCGATTCCCGGTGCGGCTTCGGCCGCAGAGGCGGCCTCCGCTGCGGCGGCTGCCT CGGCGGCGAGCGCGGCATCGGCCTCGGCATCTGCTGCCGCGTCGGCGCCCGTGGCCGCCTCCACGTCCGCTGCCGCAAAG AATCCGACGCCGCGTAAATCCGGCGCCCCGCATAAACCCCGTCCGGCCAGCGAGCCGGCGCCGAGCGCCGCGGCACCGTC GCGCGATGACGGTATTCAGGCCACGTCGCCACGCCAGCCGGTTTCCGGCGGCATCGACGAGTAA
Upstream 100 bases:
>100_bases TGCCGGCCCGCTCGACGCGCATCGCAGTTCATGCCTTCCGGTTCCGGCCGGAAAAGGCGCACACTCATCATGGCCGTCAT CCGGCCTTTTGCAGAATCGC
Downstream 100 bases:
>100_bases GGAGAAAGGCATGCAATTCGACAAGCGCGCCTGGCTCGATCGCATCAAGCGGATGTTCGCGGGCTTCGACCGTCCGCTCG CACTGATCGTGTTTCTGCTT
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 767; Mature: 766
Protein sequence:
>767_residues MTEFKDTQQQLSKFRLRVAAAGLFVFVCFGLIGFRFLFLQVWHYSKYSLQADENRISVAPIVPNRGIITDRNGVVLAKNY SAYTLEITPSKLNDSLENVIDNLATVVSIDARDRRRFKKLQEDSKNFESLPIRTRLTDDEVARFTAQRFRFPGVEVRARL FRQYPLGPTAAHVIGYIGRISQRDQDRIDDASDQNDSDPDHYDPRLDANNYKGTDYIGKIGVEQSYETELHGQTGFEEVE VTAGGRPVRTLSRTQATPGNNLVLSLDIGLQQVAEQAFAGRRGALVAIEPSSGDVLAFVSAPSFDPNSFVDGIDQQTWDD LNNSPDHPLLNRPLHGTYPPGSTYKPFMALAALTLHKRTPGWGFQDPGSYTFGGHTFRNDVRSGQGWVDMNRAIVVSNDT YFYMLAHDLGVNNIANFMKPWGFGQITGIDISGEARGILPSTEWKRKAYRKPEQQRWYEGETISLGIGQGYNSFTILQLA HATATLANNGVVMKPHLVRDIENPITKETRPVVRDPSDRIAVKQSDIDIIKRAMVGVVTNGTASKLFVGAPYQAAGKTGT AQVYSLQGANYKGHAIAEHLRDHALFIAFAPAEQPKIALALIVENGGWGAEAAGPIARKVLDYYLVGKNKPGAQAAAIEA AASATEDASAPEVGGAPAPQEAVQPVKVAAGFTALPIPGAASAAEAASAAAAASAASAASASASAAASAPVAASTSAAAK NPTPRKSGAPHKPRPASEPAPSAAAPSRDDGIQATSPRQPVSGGIDE
Sequences:
>Translated_767_residues MTEFKDTQQQLSKFRLRVAAAGLFVFVCFGLIGFRFLFLQVWHYSKYSLQADENRISVAPIVPNRGIITDRNGVVLAKNY SAYTLEITPSKLNDSLENVIDNLATVVSIDARDRRRFKKLQEDSKNFESLPIRTRLTDDEVARFTAQRFRFPGVEVRARL FRQYPLGPTAAHVIGYIGRISQRDQDRIDDASDQNDSDPDHYDPRLDANNYKGTDYIGKIGVEQSYETELHGQTGFEEVE VTAGGRPVRTLSRTQATPGNNLVLSLDIGLQQVAEQAFAGRRGALVAIEPSSGDVLAFVSAPSFDPNSFVDGIDQQTWDD LNNSPDHPLLNRPLHGTYPPGSTYKPFMALAALTLHKRTPGWGFQDPGSYTFGGHTFRNDVRSGQGWVDMNRAIVVSNDT YFYMLAHDLGVNNIANFMKPWGFGQITGIDISGEARGILPSTEWKRKAYRKPEQQRWYEGETISLGIGQGYNSFTILQLA HATATLANNGVVMKPHLVRDIENPITKETRPVVRDPSDRIAVKQSDIDIIKRAMVGVVTNGTASKLFVGAPYQAAGKTGT AQVYSLQGANYKGHAIAEHLRDHALFIAFAPAEQPKIALALIVENGGWGAEAAGPIARKVLDYYLVGKNKPGAQAAAIEA AASATEDASAPEVGGAPAPQEAVQPVKVAAGFTALPIPGAASAAEAASAAAAASAASAASASASAAASAPVAASTSAAAK NPTPRKSGAPHKPRPASEPAPSAAAPSRDDGIQATSPRQPVSGGIDE >Mature_766_residues TEFKDTQQQLSKFRLRVAAAGLFVFVCFGLIGFRFLFLQVWHYSKYSLQADENRISVAPIVPNRGIITDRNGVVLAKNYS AYTLEITPSKLNDSLENVIDNLATVVSIDARDRRRFKKLQEDSKNFESLPIRTRLTDDEVARFTAQRFRFPGVEVRARLF RQYPLGPTAAHVIGYIGRISQRDQDRIDDASDQNDSDPDHYDPRLDANNYKGTDYIGKIGVEQSYETELHGQTGFEEVEV TAGGRPVRTLSRTQATPGNNLVLSLDIGLQQVAEQAFAGRRGALVAIEPSSGDVLAFVSAPSFDPNSFVDGIDQQTWDDL NNSPDHPLLNRPLHGTYPPGSTYKPFMALAALTLHKRTPGWGFQDPGSYTFGGHTFRNDVRSGQGWVDMNRAIVVSNDTY FYMLAHDLGVNNIANFMKPWGFGQITGIDISGEARGILPSTEWKRKAYRKPEQQRWYEGETISLGIGQGYNSFTILQLAH ATATLANNGVVMKPHLVRDIENPITKETRPVVRDPSDRIAVKQSDIDIIKRAMVGVVTNGTASKLFVGAPYQAAGKTGTA QVYSLQGANYKGHAIAEHLRDHALFIAFAPAEQPKIALALIVENGGWGAEAAGPIARKVLDYYLVGKNKPGAQAAAIEAA ASATEDASAPEVGGAPAPQEAVQPVKVAAGFTALPIPGAASAAEAASAAAAASAASAASASASAAASAPVAASTSAAAKN PTPRKSGAPHKPRPASEPAPSAAAPSRDDGIQATSPRQPVSGGIDE
Specific function: Cell wall formation; PBP-2 is responsible for the determination of the rod shape of the cell. Its synthesize cross- linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786854, Length=654, Percent_Identity=39.6024464831804, Blast_Score=469, Evalue=1e-133, Organism=Escherichia coli, GI1786272, Length=631, Percent_Identity=22.5039619651347, Blast_Score=118, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR017790 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 82388; Mature: 82257
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEFKDTQQQLSKFRLRVAAAGLFVFVCFGLIGFRFLFLQVWHYSKYSLQADENRISVAP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEE IVPNRGIITDRNGVVLAKNYSAYTLEITPSKLNDSLENVIDNLATVVSIDARDRRRFKKL ECCCCCEEECCCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHH QEDSKNFESLPIRTRLTDDEVARFTAQRFRFPGVEVRARLFRQYPLGPTAAHVIGYIGRI HHHCCCHHCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH SQRDQDRIDDASDQNDSDPDHYDPRLDANNYKGTDYIGKIGVEQSYETELHGQTGFEEVE CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCHHCCCCCCCCEEE VTAGGRPVRTLSRTQATPGNNLVLSLDIGLQQVAEQAFAGRRGALVAIEPSSGDVLAFVS EECCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEE APSFDPNSFVDGIDQQTWDDLNNSPDHPLLNRPLHGTYPPGSTYKPFMALAALTLHKRTP CCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC GWGFQDPGSYTFGGHTFRNDVRSGQGWVDMNRAIVVSNDTYFYMLAHDLGVNNIANFMKP CCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCEEEEECCEEEEEEEECCCHHHHHHHHCC WGFGQITGIDISGEARGILPSTEWKRKAYRKPEQQRWYEGETISLGIGQGYNSFTILQLA CCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCEEEEEEH HATATLANNGVVMKPHLVRDIENPITKETRPVVRDPSDRIAVKQSDIDIIKRAMVGVVTN HHHHHHCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHEEEC GTASKLFVGAPYQAAGKTGTAQVYSLQGANYKGHAIAEHLRDHALFIAFAPAEQPKIALA CCCCEEEEECCCHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCCCCCCEEEE LIVENGGWGAEAAGPIARKVLDYYLVGKNKPGAQAAAIEAAASATEDASAPEVGGAPAPQ EEEECCCCCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH EAVQPVKVAAGFTALPIPGAASAAEAASAAAAASAASAASASASAAASAPVAASTSAAAK HHHCCHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC NPTPRKSGAPHKPRPASEPAPSAAAPSRDDGIQATSPRQPVSGGIDE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TEFKDTQQQLSKFRLRVAAAGLFVFVCFGLIGFRFLFLQVWHYSKYSLQADENRISVAP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEE IVPNRGIITDRNGVVLAKNYSAYTLEITPSKLNDSLENVIDNLATVVSIDARDRRRFKKL ECCCCCEEECCCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHH QEDSKNFESLPIRTRLTDDEVARFTAQRFRFPGVEVRARLFRQYPLGPTAAHVIGYIGRI HHHCCCHHCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH SQRDQDRIDDASDQNDSDPDHYDPRLDANNYKGTDYIGKIGVEQSYETELHGQTGFEEVE CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCHHCCCCCCCCEEE VTAGGRPVRTLSRTQATPGNNLVLSLDIGLQQVAEQAFAGRRGALVAIEPSSGDVLAFVS EECCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEE APSFDPNSFVDGIDQQTWDDLNNSPDHPLLNRPLHGTYPPGSTYKPFMALAALTLHKRTP CCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC GWGFQDPGSYTFGGHTFRNDVRSGQGWVDMNRAIVVSNDTYFYMLAHDLGVNNIANFMKP CCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCEEEEECCEEEEEEEECCCHHHHHHHHCC WGFGQITGIDISGEARGILPSTEWKRKAYRKPEQQRWYEGETISLGIGQGYNSFTILQLA CCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCEEEEEEH HATATLANNGVVMKPHLVRDIENPITKETRPVVRDPSDRIAVKQSDIDIIKRAMVGVVTN HHHHHHCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHEEEC GTASKLFVGAPYQAAGKTGTAQVYSLQGANYKGHAIAEHLRDHALFIAFAPAEQPKIALA CCCCEEEEECCCHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCCCCCCEEEE LIVENGGWGAEAAGPIARKVLDYYLVGKNKPGAQAAAIEAAASATEDASAPEVGGAPAPQ EEEECCCCCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH EAVQPVKVAAGFTALPIPGAASAAEAASAAAAASAASAASASASAAASAPVAASTSAAAK HHHCCHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC NPTPRKSGAPHKPRPASEPAPSAAAPSRDDGIQATSPRQPVSGGIDE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]