| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91781417
Identifier: 91781417
GI number: 91781417
Start: 42394
End: 44568
Strand: Direct
Name: 91781417
Synonym: Bxe_A4429
Alternate gene names: NA
Gene position: 42394-44568 (Clockwise)
Preceding gene: 91781416
Following gene: 91781418
Centisome position: 0.87
GC content: 57.29
Gene sequence:
>2175_bases GTGCTGAAATCCTTGACCCGTACCGTAACCATGCGTGGTGCAGCACTGCCTGGCACACCGCTGGGCGAGCCCGCGTTGCT CTTGCGATCCATTCAGGGAGAAGAAGTCCTTTCCCAGATATATACGTACACCCTCAACTGCTGCACGCCGCTTGCCTCGG TCATGCCGGAGCATGCAGCGGCCAACATCGACCTGAAGTCGATGATCGGGAAAGAGCTGACTGTTACTATCGAACTGGAA GGAATGGGCGACTATGTGCCGGGCCTGGCCGGAATTGCAGGCGCGGCCAACATCGGCGCGGGCACGCGCGAGATCAGCGG GATTGTGACGAAAGCGCACTACGTTGGCCAATCGAATCAGCAGAGTCACTATCAGTTGATACTCGCACCGTGGATCTGGC TCGCTGACCAGCGTTCGGACTTCAGGATATTTCAGGGCAAGACGGTCGTGGAGATCATCGAGCAGGTGTTCGAGAACTAT ATGTACTCGTATCAGATGCGCCTGAGCGAGCAGTATCCCGTGCTGGACTATCAGGTTCAGTATGGAGAGACGGATTTCTA TTTTGTTCAGCGCCTGATGGCCGAACACGGCATATATTGGTTCTTCGAGCACAGCGACGGTTTTCACCGGATGATTCTGG TCGATCAGCCCGGTGCGCACAAGCCGGTTGAAAGTGCCGCCTATCAGACACTGTGGTATTTTCCGCCGGGCCATAAGATC GATCGGGAATACGTCGATCGCTTTACTCTGGGTGGAAGCCTGCAATCCGGACGGTGGACCACGAACGACTTCGACTTCAA GAAGCCGAACGCGGTGCTGATCGAGCAAAACGAACTTCCGCAGAAAACCGCGCATAGTAATCTTGAGCGCTACGAGTGGC CCGGTGACTATACCAATCCATCACACGGCGAGCAGTTCGCGCGCTTGCGTATGGAAGAGGTACGCGCGCACGGAGAGCGC GCCAGAGGGTCCGGCAACGTGCGCGACATTGTGTGCGGCACGACCTTTCGGCTGGAAGGTTATCCGCATGAAGCGGCCAA TCAGGAATACCTCGTGATTTCGTCGTCGATTGCTGCGTCGGAGGCAGATCAGACCACGGGTTCAAGCGAGTACACCTTCA AATCCTCGTTCCTGGTTCAGCCGGCAACGACCGTATTCCGGCCGTCGCGCAAGCCTTATCCGAAGCCGCGCACAAGCGGT CCGCAGACCGCCATCGTGACGGGTCCGCCGGACCAGGAGATCTGGACCGATCAGTACGGCAGAGTGAAGCTGAGTTTCCA CTGGGATCGCTCAGGGGTGAAGGATCAGAGCTCGTCGTGCTGGATACGCGTGTCCTATCCGTGGGTGGGAACGAACTACG GCTCAATCAACATTCCGCGCATTGGCACAGAGGTGATCGTCGACTTCGAGAACGGCGATCCGGATCTTCCCATTGTCACG GGCAGGGTCTACAACGCGGCATCCATGCCGCCCTGGCCGTTGCCCGCCGGCGCCACCCAAAGCGGTACGCTGTCGCGCTC CACGAAGGGCGGCGGATATGACAACGCCAATGCGATTCGCTTCGAGGACATGAAGGGTAGTGAAGAACTCTGGCTGCACG CGGAGAAAGACCAGCGCATCGAAGTCGAACATGACGAGAGTCACTGGGTCGGAAACAACCGGCTGAAGACTATCGACGGC AACGAAACCGTGAAGGTCAACATGAACCGCACGGAAGCGGTTGCGCTGAACGAAACCATCGCCGTTGGCATGAACAGATC GGAGATTGTCGGCCTCAACGAAACGGTCGTTGTCGGAGTCAACCGGATGATCACGACCGGTATCGACCAGGCGGTACAGG TCGGCGTGAACTCGATGATGACTGTAGGAGCAATGCAAACAGAATCGATCGGCTCGAACTATCAACTCACGGTGGGTTCG AATTTCACGAGTCAGATCGGTAATTCGCTTTCGCAGAGCGCCGGACAGTCGATCTCCATGACCGCGGGAAAAATGGTCAG CGTGAACTCGGGCGGAACGGCCGGCTATAGCGCGAGCGATAAGCTGACGTTGCAGTGCGGTCAGGCGTCGATCTCGCTCG AGAGCAACGGAAACATCACGATCAGCGGCACTTCCATCGATGTTCAGGGTTCACAGCATGTTGGTATCAACGGTGCGATC GTGGACATCAATTGA
Upstream 100 bases:
>100_bases ACTGCGTTCTGCTTCGGCGCGTGCAGACATGAACGCTACGCGGCAATAGAAGTTTGGCGCTATTTGCCGATCACCATCCG TTTTTCCGAGGTTTTGCGTC
Downstream 100 bases:
>100_bases TCAAATGACCTGTCGGGAAGAGAAGGCGGTGTTTTTCATGTTCGCGGGAAACCGGGTTTTTAACGCTGGGTTTTTCCGGA AGCGTTCACACCGACCGGCG
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Rhs Element Vgr Protein; Rhs-Family Protein; Rhs Family Protein; Rhs Element Vgr Family Protein; VgrG Protein; Rhs Accessory Genetic Element; Vgr-Related Protein; RHS Accessory Genetic Element; Vgr Protein; VgrG Family T6SS G; Replication/Virulence Associated Protein; Conserved Hypothethical Protein; Rhs Element Vgr Family; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Element Vgr Protein Subfamily; Rhs Element Protein; Type VI Secretion System Effector Protein VgrS; VrgG Protein; Rhs Protein; Rhs/Vgr-Family Protein; Vgr Family Type VI Secretion System
Number of amino acids: Translated: 724; Mature: 724
Protein sequence:
>724_residues MLKSLTRTVTMRGAALPGTPLGEPALLLRSIQGEEVLSQIYTYTLNCCTPLASVMPEHAAANIDLKSMIGKELTVTIELE GMGDYVPGLAGIAGAANIGAGTREISGIVTKAHYVGQSNQQSHYQLILAPWIWLADQRSDFRIFQGKTVVEIIEQVFENY MYSYQMRLSEQYPVLDYQVQYGETDFYFVQRLMAEHGIYWFFEHSDGFHRMILVDQPGAHKPVESAAYQTLWYFPPGHKI DREYVDRFTLGGSLQSGRWTTNDFDFKKPNAVLIEQNELPQKTAHSNLERYEWPGDYTNPSHGEQFARLRMEEVRAHGER ARGSGNVRDIVCGTTFRLEGYPHEAANQEYLVISSSIAASEADQTTGSSEYTFKSSFLVQPATTVFRPSRKPYPKPRTSG PQTAIVTGPPDQEIWTDQYGRVKLSFHWDRSGVKDQSSSCWIRVSYPWVGTNYGSINIPRIGTEVIVDFENGDPDLPIVT GRVYNAASMPPWPLPAGATQSGTLSRSTKGGGYDNANAIRFEDMKGSEELWLHAEKDQRIEVEHDESHWVGNNRLKTIDG NETVKVNMNRTEAVALNETIAVGMNRSEIVGLNETVVVGVNRMITTGIDQAVQVGVNSMMTVGAMQTESIGSNYQLTVGS NFTSQIGNSLSQSAGQSISMTAGKMVSVNSGGTAGYSASDKLTLQCGQASISLESNGNITISGTSIDVQGSQHVGINGAI VDIN
Sequences:
>Translated_724_residues MLKSLTRTVTMRGAALPGTPLGEPALLLRSIQGEEVLSQIYTYTLNCCTPLASVMPEHAAANIDLKSMIGKELTVTIELE GMGDYVPGLAGIAGAANIGAGTREISGIVTKAHYVGQSNQQSHYQLILAPWIWLADQRSDFRIFQGKTVVEIIEQVFENY MYSYQMRLSEQYPVLDYQVQYGETDFYFVQRLMAEHGIYWFFEHSDGFHRMILVDQPGAHKPVESAAYQTLWYFPPGHKI DREYVDRFTLGGSLQSGRWTTNDFDFKKPNAVLIEQNELPQKTAHSNLERYEWPGDYTNPSHGEQFARLRMEEVRAHGER ARGSGNVRDIVCGTTFRLEGYPHEAANQEYLVISSSIAASEADQTTGSSEYTFKSSFLVQPATTVFRPSRKPYPKPRTSG PQTAIVTGPPDQEIWTDQYGRVKLSFHWDRSGVKDQSSSCWIRVSYPWVGTNYGSINIPRIGTEVIVDFENGDPDLPIVT GRVYNAASMPPWPLPAGATQSGTLSRSTKGGGYDNANAIRFEDMKGSEELWLHAEKDQRIEVEHDESHWVGNNRLKTIDG NETVKVNMNRTEAVALNETIAVGMNRSEIVGLNETVVVGVNRMITTGIDQAVQVGVNSMMTVGAMQTESIGSNYQLTVGS NFTSQIGNSLSQSAGQSISMTAGKMVSVNSGGTAGYSASDKLTLQCGQASISLESNGNITISGTSIDVQGSQHVGINGAI VDIN >Mature_724_residues MLKSLTRTVTMRGAALPGTPLGEPALLLRSIQGEEVLSQIYTYTLNCCTPLASVMPEHAAANIDLKSMIGKELTVTIELE GMGDYVPGLAGIAGAANIGAGTREISGIVTKAHYVGQSNQQSHYQLILAPWIWLADQRSDFRIFQGKTVVEIIEQVFENY MYSYQMRLSEQYPVLDYQVQYGETDFYFVQRLMAEHGIYWFFEHSDGFHRMILVDQPGAHKPVESAAYQTLWYFPPGHKI DREYVDRFTLGGSLQSGRWTTNDFDFKKPNAVLIEQNELPQKTAHSNLERYEWPGDYTNPSHGEQFARLRMEEVRAHGER ARGSGNVRDIVCGTTFRLEGYPHEAANQEYLVISSSIAASEADQTTGSSEYTFKSSFLVQPATTVFRPSRKPYPKPRTSG PQTAIVTGPPDQEIWTDQYGRVKLSFHWDRSGVKDQSSSCWIRVSYPWVGTNYGSINIPRIGTEVIVDFENGDPDLPIVT GRVYNAASMPPWPLPAGATQSGTLSRSTKGGGYDNANAIRFEDMKGSEELWLHAEKDQRIEVEHDESHWVGNNRLKTIDG NETVKVNMNRTEAVALNETIAVGMNRSEIVGLNETVVVGVNRMITTGIDQAVQVGVNSMMTVGAMQTESIGSNYQLTVGS NFTSQIGNSLSQSAGQSISMTAGKMVSVNSGGTAGYSASDKLTLQCGQASISLESNGNITISGTSIDVQGSQHVGINGAI VDIN
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79664; Mature: 79664
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKSLTRTVTMRGAALPGTPLGEPALLLRSIQGEEVLSQIYTYTLNCCTPLASVMPEHAA CCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH ANIDLKSMIGKELTVTIELEGMGDYVPGLAGIAGAANIGAGTREISGIVTKAHYVGQSNQ CCCCHHHHCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHEEEEEECCCCCC QSHYQLILAPWIWLADQRSDFRIFQGKTVVEIIEQVFENYMYSYQMRLSEQYPVLDYQVQ CCCEEEEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEE YGETDFYFVQRLMAEHGIYWFFEHSDGFHRMILVDQPGAHKPVESAAYQTLWYFPPGHKI CCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEECCCCCCCHHHHHCEEEEECCCCCCC DREYVDRFTLGGSLQSGRWTTNDFDFKKPNAVLIEQNELPQKTAHSNLERYEWPGDYTNP CHHHHHHEEECCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCEEECCCCCCCC SHGEQFARLRMEEVRAHGERARGSGNVRDIVCGTTFRLEGYPHEAANQEYLVISSSIAAS CCHHHHHHHHHHHHHHCCHHCCCCCCCEEEEECCEEEECCCCCCCCCCEEEEEECCCCCC EADQTTGSSEYTFKSSFLVQPATTVFRPSRKPYPKPRTSGPQTAIVTGPPDQEIWTDQYG CCCCCCCCCCEEEECEEEECCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC RVKLSFHWDRSGVKDQSSSCWIRVSYPWVGTNYGSINIPRIGTEVIVDFENGDPDLPIVT EEEEEEEECCCCCCCCCCCEEEEEECCEECCCCCCEECCCCCEEEEEEECCCCCCCCEEE GRVYNAASMPPWPLPAGATQSGTLSRSTKGGGYDNANAIRFEDMKGSEELWLHAEKDQRI CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEE EVEHDESHWVGNNRLKTIDGNETVKVNMNRTEAVALNETIAVGMNRSEIVGLNETVVVGV EEECCCCCCCCCCEEEEECCCCEEEEECCCCEEEEECCEEEECCCHHHEECCCCEEEEEC NRMITTGIDQAVQVGVNSMMTVGAMQTESIGSNYQLTVGSNFTSQIGNSLSQSAGQSISM CHHHHHCHHHHHHHCCHHHEEECCEEHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE TAGKMVSVNSGGTAGYSASDKLTLQCGQASISLESNGNITISGTSIDVQGSQHVGINGAI ECCEEEEECCCCCCCCCCCCEEEEEECCEEEEEECCCCEEEEEEEEEECCCCEECCCEEE VDIN EEEC >Mature Secondary Structure MLKSLTRTVTMRGAALPGTPLGEPALLLRSIQGEEVLSQIYTYTLNCCTPLASVMPEHAA CCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH ANIDLKSMIGKELTVTIELEGMGDYVPGLAGIAGAANIGAGTREISGIVTKAHYVGQSNQ CCCCHHHHCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHEEEEEECCCCCC QSHYQLILAPWIWLADQRSDFRIFQGKTVVEIIEQVFENYMYSYQMRLSEQYPVLDYQVQ CCCEEEEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEE YGETDFYFVQRLMAEHGIYWFFEHSDGFHRMILVDQPGAHKPVESAAYQTLWYFPPGHKI CCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEECCCCCCCHHHHHCEEEEECCCCCCC DREYVDRFTLGGSLQSGRWTTNDFDFKKPNAVLIEQNELPQKTAHSNLERYEWPGDYTNP CHHHHHHEEECCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCEEECCCCCCCC SHGEQFARLRMEEVRAHGERARGSGNVRDIVCGTTFRLEGYPHEAANQEYLVISSSIAAS CCHHHHHHHHHHHHHHCCHHCCCCCCCEEEEECCEEEECCCCCCCCCCEEEEEECCCCCC EADQTTGSSEYTFKSSFLVQPATTVFRPSRKPYPKPRTSGPQTAIVTGPPDQEIWTDQYG CCCCCCCCCCEEEECEEEECCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC RVKLSFHWDRSGVKDQSSSCWIRVSYPWVGTNYGSINIPRIGTEVIVDFENGDPDLPIVT EEEEEEEECCCCCCCCCCCEEEEEECCEECCCCCCEECCCCCEEEEEEECCCCCCCCEEE GRVYNAASMPPWPLPAGATQSGTLSRSTKGGGYDNANAIRFEDMKGSEELWLHAEKDQRI CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEE EVEHDESHWVGNNRLKTIDGNETVKVNMNRTEAVALNETIAVGMNRSEIVGLNETVVVGV EEECCCCCCCCCCEEEEECCCCEEEEECCCCEEEEECCEEEECCCHHHEECCCCEEEEEC NRMITTGIDQAVQVGVNSMMTVGAMQTESIGSNYQLTVGSNFTSQIGNSLSQSAGQSISM CHHHHHCHHHHHHHCCHHHEEECCEEHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE TAGKMVSVNSGGTAGYSASDKLTLQCGQASISLESNGNITISGTSIDVQGSQHVGINGAI ECCEEEEECCCCCCCCCCCCEEEEEECCEEEEEECCCCEEEEEEEEEECCCCEECCCEEE VDIN EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA