| Definition | Chlamydophila felis Fe/C-56, complete genome. |
|---|---|
| Accession | NC_007899 |
| Length | 1,166,239 |
Click here to switch to the map view.
The map label for this gene is pmp18 [H]
Identifier: 89898544
GI number: 89898544
Start: 871171
End: 874020
Strand: Direct
Name: pmp18 [H]
Synonym: CF0737
Alternate gene names: 89898544
Gene position: 871171-874020 (Clockwise)
Preceding gene: 89898543
Following gene: 89898554
Centisome position: 74.7
GC content: 40.42
Gene sequence:
>2850_bases ATGAAAATACGGTTCTCTACTTCCTTCAGCGCTTATCTTCTGATCTTCTTATTAACTTGTTTATCACTTTCTTTACACGC CTCCCCAACACAAGCTACATGCCCATTTCAAAGTTTTGAATATGAACAACTTCTTTGTCAGAAACTCTTCTCTGATATTC CTGAAGAACAAAATACCCTTGAAGGACTTACAAATTCAACAGGCACTATTACTGTTGAAAACTACAAGAATGTTATCTGC TCTCAGAAAATCTCTAGTAAAAACGGCGGGGTTTTGGATGCTACTTCGGTAGTTGTACAAAACATTCAGAATGACATAAA GTTTATCTTAAACATAACAGCGCAAAAAGGTGGGGTCATCCATACTACAGGCAACTGTAGCATTACTCAAAATCTAGGAA AACAGTACTACATTGGCAACCAGTCTAATGCTCCCGCCTATGCAAGCACCTCCACAAACTATGGCGGCGCTATCTGTTGC GGAGGAAATCTTGAGTTATCTAAGAATCGTGGGGCTATTTGCTTTGCTTATAATACAGCAATTATGCGCGGTGGCGCTGT CTCATCAGATGCTAGTTTTAAGATAACAGGGAATTCTGCTCCTATTTTGTTAATGAACAATTTAGCCTTGAATCAACAAG GGGGAGCAATTTATTGCCAAAATTGTGAGATTTCAAACAATTCTGAACCTATATATATAACTTCTAACTCATCTTCTATT GGAGGGGCTTGCCACGCAACTTCTACCGTAGAAATTAGAAATAATTCTAATTTGATTTTCTTTGCGAATAACTCCGGTGT ATGCGATCGCCCTATTGGAGCGGTGAGCTCCGGGGGAGCGATCTCTGCAACAACTATAAAAATAGAGGATAATTCTGGAC CCGTTTGCTTCAATAATAATACTGTAGACCGTAATGGTGGCGCCTTATGGTGCCAAACATTAACTATTAAAAATAATGGG CCCGTTCAATTTATCAAGAATCGAGCTAGATGGGGAGGAGCCTTACTCATTAAAAATGATGGTACCTGCGATCTATCTGC AGATAATGGGGACATCATTTTTAATAATAACTGCGGAACATATAGTCAACTATATAGAAATACTATGCACTGCACAGCGG GAACAACTTTAAAAGTTGGGGCAAAGAAAAATTACTGTGTGAAGTTCTACGATCCTATCCAATGCCATTACCCATCTCCA TTAATAACATTTAATAATGAAGACTATCACGAAGGAACGGTTTTATTATCCGGGATATTCGTTCCCGACTCCTTCAAAGA CGAAGCGAACTTCATTAGCAATATAAAAAATCCAATAACTATCAAATACGGCGTGCTTGCTATTGAAGATCGAGCGGGAT TAGCTGTTTATAAAATTACACAAGAGAACAGCACTGTAAGATTAGGCAACGGCGCAGTTGTCAGAACAAATGTAAAAGCT ACAGACACCTCAGATCAAACAAGCAACGGTTCTGCTCTTAACATTACAAACCTTGCGCTTAACCTACCTTCTCTTATCCA AAAAGGCGCTCAAGCTCCTAAAATTTGGATCTATCCCACAAGCTCTACAACTAATAATACGACCACCTATACCGAAGATG ACAAACCAACAATCACTCTTTCTGGGCCTCTACAACTACTTAACAGCGACAATGAATATCCTTATGACTCTTTAAATCTC TCTAGTGGGATTACGCGTGTTCCTTTCTTATATCTTTGCGATAACGCAACAAAGAAAATTACAATCACAGATTTGGATAT CCAAACTATCAATAAGAGTAAACACTATGGTTATCAAGGAGTGTGGTCTCCCTATTGGGAAGAATACACAACAACAGCCA ATTCTGCGTCACCAGAAACAGCAAATACTTCACATCGTATACTCTATGTAGATTGGACCCCTACAGGTTATATTCCTAAT CCCAAGTACAAAACTCCTCTCATCGCCAATGCTCTTTGGGGATCTGTCTACACCACACTGTCAGGAATGCACACTCTGCT TTCTCCAGAAGCTAATCCCAAATATTTTGAACTCGGCGGTCAGGGATTAATTATGACTATTCGTCAGCGTGATCGCCTAG GAATTCGTGGATTTCGTATGGAATCCGCAGGTTATGCAGCAACCTCATCGGCTGCGACCAAGATAAATCACAAGATCTCC TTTGCATTTTCTCAGCAAATCTCTCACATCAAAGAGCATACAACATCTAACAAAGTCTCTTCGAAAAACTACTTCGGAGG TATACAATTGCGTTTTCCTTGGTTAGGAGATGCCTTGGTCTCCACAGCATCACTAGCCTATAATTATGGGGATCACATCG CGAAGCATTTCTATGCAGAAGATAACAAGGATTCCGAAGGGTATTTCTCTAGCTATACATTCGGAGCCTGTCTGAATTTC ATGCTAAATCTCAACCTAATGAGTAATGTGTTTTCTGTAGCACCATTTATAGAGGCTTTAGCCTGTAGAGCTACGCTCTC AAATTTTATAGAACAGAGAGATTTTGCACGGAAATTCACAGTGAATAGACCTTTAGAAAACATCACATTGCCTATTGGAG TGATCATGCAATGGGCGCATGATTGGATCTTCCCAATAATCTGGCACGTACAACTTGCCTACCACCCTGTTATCTACAGA CACTATCCTCAGGTATTGACAACACTGCTCTCTAGCAACGGCAGCTGGCTGTCTTCAGGAACCCCTATAGACAGACAATC CCTCTCCGTTCATGTCAATCACTCTACGCGCTTGTTCTCCAATCTCAAAATGACCCTATCTTACAGAGGAGACTTCGCCT CCTCCACAGTCTGTAACTATCTGAAGGCAGAATGTGGTCTTACTTTTTAA
Upstream 100 bases:
>100_bases GAGCATTAATTATCGTGGAGATTTTTCAAAATCTACACTGTGTAATTTTTTAAATGTAACGAGTGAAATCAAATTTTAGA CTTAGAAAATAAGTACCCCC
Downstream 100 bases:
>100_bases AAAAGACAAAGCTGTAAAAGTCTCCTTTTACAGCCTTGAAGACGTCTACTTACTACGCCCCCTATTCTTCCCAAGCACTT TATCCTGCAACCGTCTTAGC
Product: polymorphic outer membrane protein F family protein
Products: NA
Alternate protein names: Polymorphic membrane protein 16 [H]
Number of amino acids: Translated: 949; Mature: 949
Protein sequence:
>949_residues MKIRFSTSFSAYLLIFLLTCLSLSLHASPTQATCPFQSFEYEQLLCQKLFSDIPEEQNTLEGLTNSTGTITVENYKNVIC SQKISSKNGGVLDATSVVVQNIQNDIKFILNITAQKGGVIHTTGNCSITQNLGKQYYIGNQSNAPAYASTSTNYGGAICC GGNLELSKNRGAICFAYNTAIMRGGAVSSDASFKITGNSAPILLMNNLALNQQGGAIYCQNCEISNNSEPIYITSNSSSI GGACHATSTVEIRNNSNLIFFANNSGVCDRPIGAVSSGGAISATTIKIEDNSGPVCFNNNTVDRNGGALWCQTLTIKNNG PVQFIKNRARWGGALLIKNDGTCDLSADNGDIIFNNNCGTYSQLYRNTMHCTAGTTLKVGAKKNYCVKFYDPIQCHYPSP LITFNNEDYHEGTVLLSGIFVPDSFKDEANFISNIKNPITIKYGVLAIEDRAGLAVYKITQENSTVRLGNGAVVRTNVKA TDTSDQTSNGSALNITNLALNLPSLIQKGAQAPKIWIYPTSSTTNNTTTYTEDDKPTITLSGPLQLLNSDNEYPYDSLNL SSGITRVPFLYLCDNATKKITITDLDIQTINKSKHYGYQGVWSPYWEEYTTTANSASPETANTSHRILYVDWTPTGYIPN PKYKTPLIANALWGSVYTTLSGMHTLLSPEANPKYFELGGQGLIMTIRQRDRLGIRGFRMESAGYAATSSAATKINHKIS FAFSQQISHIKEHTTSNKVSSKNYFGGIQLRFPWLGDALVSTASLAYNYGDHIAKHFYAEDNKDSEGYFSSYTFGACLNF MLNLNLMSNVFSVAPFIEALACRATLSNFIEQRDFARKFTVNRPLENITLPIGVIMQWAHDWIFPIIWHVQLAYHPVIYR HYPQVLTTLLSSNGSWLSSGTPIDRQSLSVHVNHSTRLFSNLKMTLSYRGDFASSTVCNYLKAECGLTF
Sequences:
>Translated_949_residues MKIRFSTSFSAYLLIFLLTCLSLSLHASPTQATCPFQSFEYEQLLCQKLFSDIPEEQNTLEGLTNSTGTITVENYKNVIC SQKISSKNGGVLDATSVVVQNIQNDIKFILNITAQKGGVIHTTGNCSITQNLGKQYYIGNQSNAPAYASTSTNYGGAICC GGNLELSKNRGAICFAYNTAIMRGGAVSSDASFKITGNSAPILLMNNLALNQQGGAIYCQNCEISNNSEPIYITSNSSSI GGACHATSTVEIRNNSNLIFFANNSGVCDRPIGAVSSGGAISATTIKIEDNSGPVCFNNNTVDRNGGALWCQTLTIKNNG PVQFIKNRARWGGALLIKNDGTCDLSADNGDIIFNNNCGTYSQLYRNTMHCTAGTTLKVGAKKNYCVKFYDPIQCHYPSP LITFNNEDYHEGTVLLSGIFVPDSFKDEANFISNIKNPITIKYGVLAIEDRAGLAVYKITQENSTVRLGNGAVVRTNVKA TDTSDQTSNGSALNITNLALNLPSLIQKGAQAPKIWIYPTSSTTNNTTTYTEDDKPTITLSGPLQLLNSDNEYPYDSLNL SSGITRVPFLYLCDNATKKITITDLDIQTINKSKHYGYQGVWSPYWEEYTTTANSASPETANTSHRILYVDWTPTGYIPN PKYKTPLIANALWGSVYTTLSGMHTLLSPEANPKYFELGGQGLIMTIRQRDRLGIRGFRMESAGYAATSSAATKINHKIS FAFSQQISHIKEHTTSNKVSSKNYFGGIQLRFPWLGDALVSTASLAYNYGDHIAKHFYAEDNKDSEGYFSSYTFGACLNF MLNLNLMSNVFSVAPFIEALACRATLSNFIEQRDFARKFTVNRPLENITLPIGVIMQWAHDWIFPIIWHVQLAYHPVIYR HYPQVLTTLLSSNGSWLSSGTPIDRQSLSVHVNHSTRLFSNLKMTLSYRGDFASSTVCNYLKAECGLTF >Mature_949_residues MKIRFSTSFSAYLLIFLLTCLSLSLHASPTQATCPFQSFEYEQLLCQKLFSDIPEEQNTLEGLTNSTGTITVENYKNVIC SQKISSKNGGVLDATSVVVQNIQNDIKFILNITAQKGGVIHTTGNCSITQNLGKQYYIGNQSNAPAYASTSTNYGGAICC GGNLELSKNRGAICFAYNTAIMRGGAVSSDASFKITGNSAPILLMNNLALNQQGGAIYCQNCEISNNSEPIYITSNSSSI GGACHATSTVEIRNNSNLIFFANNSGVCDRPIGAVSSGGAISATTIKIEDNSGPVCFNNNTVDRNGGALWCQTLTIKNNG PVQFIKNRARWGGALLIKNDGTCDLSADNGDIIFNNNCGTYSQLYRNTMHCTAGTTLKVGAKKNYCVKFYDPIQCHYPSP LITFNNEDYHEGTVLLSGIFVPDSFKDEANFISNIKNPITIKYGVLAIEDRAGLAVYKITQENSTVRLGNGAVVRTNVKA TDTSDQTSNGSALNITNLALNLPSLIQKGAQAPKIWIYPTSSTTNNTTTYTEDDKPTITLSGPLQLLNSDNEYPYDSLNL SSGITRVPFLYLCDNATKKITITDLDIQTINKSKHYGYQGVWSPYWEEYTTTANSASPETANTSHRILYVDWTPTGYIPN PKYKTPLIANALWGSVYTTLSGMHTLLSPEANPKYFELGGQGLIMTIRQRDRLGIRGFRMESAGYAATSSAATKINHKIS FAFSQQISHIKEHTTSNKVSSKNYFGGIQLRFPWLGDALVSTASLAYNYGDHIAKHFYAEDNKDSEGYFSSYTFGACLNF MLNLNLMSNVFSVAPFIEALACRATLSNFIEQRDFARKFTVNRPLENITLPIGVIMQWAHDWIFPIIWHVQLAYHPVIYR HYPQVLTTLLSSNGSWLSSGTPIDRQSLSVHVNHSTRLFSNLKMTLSYRGDFASSTVCNYLKAECGLTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 104130; Mature: 104130
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRFSTSFSAYLLIFLLTCLSLSLHASPTQATCPFQSFEYEQLLCQKLFSDIPEEQNTL CEEEEECCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH EGLTNSTGTITVENYKNVICSQKISSKNGGVLDATSVVVQNIQNDIKFILNITAQKGGVI HHCCCCCCEEEECCHHCHHHHHHCCCCCCCEEHHHHHHHHHHHHCEEEEEEEEECCCCEE HTTGNCSITQNLGKQYYIGNQSNAPAYASTSTNYGGAICCGGNLELSKNRGAICFAYNTA EECCCCEEHHCCCCEEEECCCCCCCEEEECCCCCCCEEEECCCEEECCCCCEEEEEECCE IMRGGAVSSDASFKITGNSAPILLMNNLALNQQGGAIYCQNCEISNNSEPIYITSNSSSI EEECCCCCCCCEEEEECCCCCEEEEECEEEECCCCEEEEECCCCCCCCCEEEEECCCCCC GGACHATSTVEIRNNSNLIFFANNSGVCDRPIGAVSSGGAISATTIKIEDNSGPVCFNNN CCEEECCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEECCC TVDRNGGALWCQTLTIKNNGPVQFIKNRARWGGALLIKNDGTCDLSADNGDIIFNNNCGT EECCCCCEEEEEEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEEECCCCCEEECCCCCH YSQLYRNTMHCTAGTTLKVGAKKNYCVKFYDPIQCHYPSPLITFNNEDYHEGTVLLSGIF HHHHHHCCEEECCCCEEEECCCCCEEEEEECCEEEECCCCEEEECCCCCCCCEEEEEEEE VPDSFKDEANFISNIKNPITIKYGVLAIEDRAGLAVYKITQENSTVRLGNGAVVRTNVKA CCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEECCCCEEEECCCEEEEEEEEE TDTSDQTSNGSALNITNLALNLPSLIQKGAQAPKIWIYPTSSTTNNTTTYTEDDKPTITL CCCCCCCCCCCEEEEEEEEECCHHHHHCCCCCCEEEEEECCCCCCCCEEEECCCCCEEEE SGPLQLLNSDNEYPYDSLNLSSGITRVPFLYLCDNATKKITITDLDIQTINKSKHYGYQG CCCHHEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECEEEECCCCCCCCCCC VWSPYWEEYTTTANSASPETANTSHRILYVDWTPTGYIPNPKYKTPLIANALWGSVYTTL CCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH SGMHTLLSPEANPKYFELGGQGLIMTIRQRDRLGIRGFRMESAGYAATSSAATKINHKIS HHHHHHHCCCCCCCEEEECCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHEECEEEE FAFSQQISHIKEHTTSNKVSSKNYFGGIQLRFPWLGDALVSTASLAYNYGDHIAKHFYAE EHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC DNKDSEGYFSSYTFGACLNFMLNLNLMSNVFSVAPFIEALACRATLSNFIEQRDFARKFT CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VNRPLENITLPIGVIMQWAHDWIFPIIWHVQLAYHPVIYRHYPQVLTTLLSSNGSWLSSG CCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCC TPIDRQSLSVHVNHSTRLFSNLKMTLSYRGDFASSTVCNYLKAECGLTF CCCCCCEEEEEECCCCEEEECEEEEEEECCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MKIRFSTSFSAYLLIFLLTCLSLSLHASPTQATCPFQSFEYEQLLCQKLFSDIPEEQNTL CEEEEECCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH EGLTNSTGTITVENYKNVICSQKISSKNGGVLDATSVVVQNIQNDIKFILNITAQKGGVI HHCCCCCCEEEECCHHCHHHHHHCCCCCCCEEHHHHHHHHHHHHCEEEEEEEEECCCCEE HTTGNCSITQNLGKQYYIGNQSNAPAYASTSTNYGGAICCGGNLELSKNRGAICFAYNTA EECCCCEEHHCCCCEEEECCCCCCCEEEECCCCCCCEEEECCCEEECCCCCEEEEEECCE IMRGGAVSSDASFKITGNSAPILLMNNLALNQQGGAIYCQNCEISNNSEPIYITSNSSSI EEECCCCCCCCEEEEECCCCCEEEEECEEEECCCCEEEEECCCCCCCCCEEEEECCCCCC GGACHATSTVEIRNNSNLIFFANNSGVCDRPIGAVSSGGAISATTIKIEDNSGPVCFNNN CCEEECCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEECCC TVDRNGGALWCQTLTIKNNGPVQFIKNRARWGGALLIKNDGTCDLSADNGDIIFNNNCGT EECCCCCEEEEEEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEEECCCCCEEECCCCCH YSQLYRNTMHCTAGTTLKVGAKKNYCVKFYDPIQCHYPSPLITFNNEDYHEGTVLLSGIF HHHHHHCCEEECCCCEEEECCCCCEEEEEECCEEEECCCCEEEECCCCCCCCEEEEEEEE VPDSFKDEANFISNIKNPITIKYGVLAIEDRAGLAVYKITQENSTVRLGNGAVVRTNVKA CCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEECCCCEEEECCCEEEEEEEEE TDTSDQTSNGSALNITNLALNLPSLIQKGAQAPKIWIYPTSSTTNNTTTYTEDDKPTITL CCCCCCCCCCCEEEEEEEEECCHHHHHCCCCCCEEEEEECCCCCCCCEEEECCCCCEEEE SGPLQLLNSDNEYPYDSLNLSSGITRVPFLYLCDNATKKITITDLDIQTINKSKHYGYQG CCCHHEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECEEEECCCCCCCCCCC VWSPYWEEYTTTANSASPETANTSHRILYVDWTPTGYIPNPKYKTPLIANALWGSVYTTL CCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH SGMHTLLSPEANPKYFELGGQGLIMTIRQRDRLGIRGFRMESAGYAATSSAATKINHKIS HHHHHHHCCCCCCCEEEECCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHEECEEEE FAFSQQISHIKEHTTSNKVSSKNYFGGIQLRFPWLGDALVSTASLAYNYGDHIAKHFYAE EHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC DNKDSEGYFSSYTFGACLNFMLNLNLMSNVFSVAPFIEALACRATLSNFIEQRDFARKFT CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VNRPLENITLPIGVIMQWAHDWIFPIIWHVQLAYHPVIYRHYPQVLTTLLSSNGSWLSSG CCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCC TPIDRQSLSVHVNHSTRLFSNLKMTLSYRGDFASSTVCNYLKAECGLTF CCCCCCEEEEEECCCCEEEECEEEEEEECCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362 [H]