| Definition | Chlamydophila felis Fe/C-56, complete genome. |
|---|---|
| Accession | NC_007899 |
| Length | 1,166,239 |
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The map label for this gene is pmp13 [H]
Identifier: 89898538
GI number: 89898538
Start: 857760
End: 860714
Strand: Direct
Name: pmp13 [H]
Synonym: CF0731
Alternate gene names: 89898538
Gene position: 857760-860714 (Clockwise)
Preceding gene: 89898537
Following gene: 89898539
Centisome position: 73.55
GC content: 42.03
Gene sequence:
>2955_bases ATGCCTCTTTCTTTAAGGTCTTCTTCTTTTTGTTTTTTGGCTTGCTTATGCAGCTCGGGGTGGGTTTCTGCCCAAACCAT AAATCAAGCTAAGCTTACGCCTCCTTTGTATGACATAGGAGAAGCTTTCCACCTTACTTCGAATTGTTTCATTGAAGATA CCTACGGAGCTAAGTTCCCCTCATCTTTCTTAGGATCAAGCACGAACTTCACTATATTTGGGAAAAAGCGCTCCTTAACA TTTTCGCAATGTCATGCCCCAGTACAAAATAATGCCTCATTAATCTCAGCAACAGAAACTCTAACATTAACAAACCTTGC CAAGCTTGTTCTTAATGAAAACGTCTCTACAGGACAAAGTGGACTTATCTCAGGGAAAAACATCTCCCTTACCTCTTCAA GGTCTATCGTAGTTACCAATAACAGAACTCCTTATTCTCCTGTGGTAACTACAGTCACAACTCCTAACAACTCAACTACG GTAAACTGTTTCTTTGGTTCTGCGATTCACACAGCAACAAGCTTAGATATTAACAAGATTCGCAAGCAGATTACCTTTGA TAGTAACTCTGGGAACTTCGGAGCCGCTCTTCTTAATGACACAGCAGCGACATGTTCTATTCAGAATAACTCCGCTACCA TTTCCTTCTCTCAAAATTTTGCGGCATGCGGTGGTGGAGCAATTTATGACGGGACAATCTCTATTAAGAATAACTCAGGA CCTATTACTCTATCAGGAAATACCGCAGCAAATGGATTGTTAACTACAACTCCTGACCCTGCGAAAGTTATTGGAGCAGG TTGTGGAGGAGCAATTTGCGCACCAACAAAGTCTGTGACATTTGCTAACAATACAGGTATTTGCAATATCAATTATAACC TTGCTGAAAAAGATGGCGGGGCTATCTACGCAACAATATGCGACTTTTCCACGAGATCTCCTGTATATCTGAGTAAAAAC TCTGCTAAAGAAAACGGTGGGGCAATTTGCGCCAAGGTCCTTACGGTAAATGCCAACGGTCCTATGATGTTCTTCAATAA CAGAGCTCAAAAAGGTGGAGCTATTTATGTAGGTTCAACTGTTGGTGATTCTACAAATCCTGCTACATCTACGTTAAGCT TAACGTCAGCTAACGGAGATATGATCTTTCTAGGAAATACGATCGACAATCGCCCAGGGATACGTAATTCTATCTGTGTT GAGGGAGACGGTAAAATTACTTCTCTTAATGCTATAGGAACATCGAGTCTGATCTTTCATGATCCTATTGCAAATAAAGG ACCAGCTACTACAAATCCAGCAACTTTAGATACAATCAATATCAATACTCCAGGGTGTTCGGGATCCGTAAAATTCTCTG CAGAAACTCTGACTATATCGGAAAAATTAAATCCCGAAAACGCTACGTCTGTGTTGTTTGGTAAAGTTGTGATTGGAGAT GGTCAGCTTATTGTAACAAATAACGCGACTTTAAATGTCCTTGGATTAACAGCAGAAACAGGACGTCTAACTTTAGGTTC TGGAGCTAAAATTGGTTTGGCAACAGTCACTGGGAATCAACCTACTCAAGAAAACTTTGTCATTAAAAACCTTGGCTTTG ACGCTCAATCCTACCTAACTCCTAGTTATGCTGCAGCAAATGTCACCACCACTAATAGCAAAACAATTACTTTAGAGGGT TCTTTAAATCTTGCTTCCGAAGATGATGCTGAGCTTTATGACAATCCCCTATTGCATAGCTCATTGTCATTCCCTGTGGC AACCTTTGTAAGTAATAACAATGATCCAACAAAAAATAACTTTTCAGTAGGGGATCTCAGCATACCTGAGCACTACGGCT ATCAAGGTCTCTGGTCATCGTCCTGGACACCACCACCATTAGCTCCTACACCTGATGGCGGCATCCCTACAGGAACCAAC AACCGTACTCTTTATGTCTTGTGGAAACCAGATCCTGCTTACCAAGCGCCGTATGTTTTAGATCCCGAACGTCGTGGAGA ACTTGTCTCCAACACACTATGGACCTCCTTCTTAGCGACACAAACCTTCTCTGAAGCTTTACAAGAGTCCCTACTGTGTG AGGAAGAGGGAGTTCTTGTTTCTGCAAAAGCTATAGGAAGCTATATCCGTCATCCTTCACGAAACATGCATGAAGGCTTC AAGGGAAGATATGGAGGTTACCAAGCCTCTATTGGCGTCCATTATCCTGACGATGCTTCCCTAGGATTAGCTTTCGGTCA ACTTTACGGCCAGGTAAAGAGCTCTCCTTATGATGCACAAAGCACAGAACGTATCAATGTAGTGTCTTTCTTTGGAAAAT TCCCCGTAGCCACAGAAAAAACACTAACAAATGTTTCCTGGGAAGCCTCATATGGTTACACAGTCAACCTTATGAAAACA AATTACCAAAATCCCAAAACACAACACACACGAAATTCTAAAGGACGCTGGCATAATAACACCTACTATGCTTTGGTATC TGTAGAGCATCCGTTCTTAACTTGGTGCCAACTCACACGTCAATTTGCTCGTGACTTGGATCTTTCAGGATTTATCTCTG CCGAGTTTATGGGTGGCTGGCAAAATGCTTTCGCAGAAACGGGAGCCCTAGTACGAAGTTTCTCCAGAGGTCGCGGACAC AACATCTCCCTACCTATAGGACTGACCTCAGATTGGCAAACACCATTTAAAAAAGCTCCTTCCACGCTCACATTGAAGAT AGCTTATAAACCTGATGTTTATCGGGTAACTCCTCATAATGTAGTCACTATCCTTGCCAACGGTGAACGCATTCCTATAA AAGGAGCACAACTTGCCAGAAACGGATTTTTCCTACAGCTGCACGACAGTGTGAAACTATCCGAATATGCCACAGGATTC TTAGATTACGTCCTTGATACCAAAAAATCCTATGCAAGCCATCGTGTAATCACAGGATTGCAAGGAAAATTCTAA
Upstream 100 bases:
>100_bases AGCCATGGTAGTGCGGAGCTACGCAAATCCTCACGCAACTACAATATAAACGTAGGAAGTAAATTTCGATTCTAAATATT ATTAACGATAGGGTTGAGGC
Downstream 100 bases:
>100_bases AACCCTTTACCGAGAGAAATTTTCTTTGCCCTAGGGGAATTTCTCTCTTTTTTCTCGTCTTATCTATCCCCACACAACAA GCATGTTTTTCTTAGATCTT
Product: polymorphic outer membrane protein H family protein
Products: NA
Alternate protein names: Polymorphic membrane protein 14 [H]
Number of amino acids: Translated: 984; Mature: 983
Protein sequence:
>984_residues MPLSLRSSSFCFLACLCSSGWVSAQTINQAKLTPPLYDIGEAFHLTSNCFIEDTYGAKFPSSFLGSSTNFTIFGKKRSLT FSQCHAPVQNNASLISATETLTLTNLAKLVLNENVSTGQSGLISGKNISLTSSRSIVVTNNRTPYSPVVTTVTTPNNSTT VNCFFGSAIHTATSLDINKIRKQITFDSNSGNFGAALLNDTAATCSIQNNSATISFSQNFAACGGGAIYDGTISIKNNSG PITLSGNTAANGLLTTTPDPAKVIGAGCGGAICAPTKSVTFANNTGICNINYNLAEKDGGAIYATICDFSTRSPVYLSKN SAKENGGAICAKVLTVNANGPMMFFNNRAQKGGAIYVGSTVGDSTNPATSTLSLTSANGDMIFLGNTIDNRPGIRNSICV EGDGKITSLNAIGTSSLIFHDPIANKGPATTNPATLDTININTPGCSGSVKFSAETLTISEKLNPENATSVLFGKVVIGD GQLIVTNNATLNVLGLTAETGRLTLGSGAKIGLATVTGNQPTQENFVIKNLGFDAQSYLTPSYAAANVTTTNSKTITLEG SLNLASEDDAELYDNPLLHSSLSFPVATFVSNNNDPTKNNFSVGDLSIPEHYGYQGLWSSSWTPPPLAPTPDGGIPTGTN NRTLYVLWKPDPAYQAPYVLDPERRGELVSNTLWTSFLATQTFSEALQESLLCEEEGVLVSAKAIGSYIRHPSRNMHEGF KGRYGGYQASIGVHYPDDASLGLAFGQLYGQVKSSPYDAQSTERINVVSFFGKFPVATEKTLTNVSWEASYGYTVNLMKT NYQNPKTQHTRNSKGRWHNNTYYALVSVEHPFLTWCQLTRQFARDLDLSGFISAEFMGGWQNAFAETGALVRSFSRGRGH NISLPIGLTSDWQTPFKKAPSTLTLKIAYKPDVYRVTPHNVVTILANGERIPIKGAQLARNGFFLQLHDSVKLSEYATGF LDYVLDTKKSYASHRVITGLQGKF
Sequences:
>Translated_984_residues MPLSLRSSSFCFLACLCSSGWVSAQTINQAKLTPPLYDIGEAFHLTSNCFIEDTYGAKFPSSFLGSSTNFTIFGKKRSLT FSQCHAPVQNNASLISATETLTLTNLAKLVLNENVSTGQSGLISGKNISLTSSRSIVVTNNRTPYSPVVTTVTTPNNSTT VNCFFGSAIHTATSLDINKIRKQITFDSNSGNFGAALLNDTAATCSIQNNSATISFSQNFAACGGGAIYDGTISIKNNSG PITLSGNTAANGLLTTTPDPAKVIGAGCGGAICAPTKSVTFANNTGICNINYNLAEKDGGAIYATICDFSTRSPVYLSKN SAKENGGAICAKVLTVNANGPMMFFNNRAQKGGAIYVGSTVGDSTNPATSTLSLTSANGDMIFLGNTIDNRPGIRNSICV EGDGKITSLNAIGTSSLIFHDPIANKGPATTNPATLDTININTPGCSGSVKFSAETLTISEKLNPENATSVLFGKVVIGD GQLIVTNNATLNVLGLTAETGRLTLGSGAKIGLATVTGNQPTQENFVIKNLGFDAQSYLTPSYAAANVTTTNSKTITLEG SLNLASEDDAELYDNPLLHSSLSFPVATFVSNNNDPTKNNFSVGDLSIPEHYGYQGLWSSSWTPPPLAPTPDGGIPTGTN NRTLYVLWKPDPAYQAPYVLDPERRGELVSNTLWTSFLATQTFSEALQESLLCEEEGVLVSAKAIGSYIRHPSRNMHEGF KGRYGGYQASIGVHYPDDASLGLAFGQLYGQVKSSPYDAQSTERINVVSFFGKFPVATEKTLTNVSWEASYGYTVNLMKT NYQNPKTQHTRNSKGRWHNNTYYALVSVEHPFLTWCQLTRQFARDLDLSGFISAEFMGGWQNAFAETGALVRSFSRGRGH NISLPIGLTSDWQTPFKKAPSTLTLKIAYKPDVYRVTPHNVVTILANGERIPIKGAQLARNGFFLQLHDSVKLSEYATGF LDYVLDTKKSYASHRVITGLQGKF >Mature_983_residues PLSLRSSSFCFLACLCSSGWVSAQTINQAKLTPPLYDIGEAFHLTSNCFIEDTYGAKFPSSFLGSSTNFTIFGKKRSLTF SQCHAPVQNNASLISATETLTLTNLAKLVLNENVSTGQSGLISGKNISLTSSRSIVVTNNRTPYSPVVTTVTTPNNSTTV NCFFGSAIHTATSLDINKIRKQITFDSNSGNFGAALLNDTAATCSIQNNSATISFSQNFAACGGGAIYDGTISIKNNSGP ITLSGNTAANGLLTTTPDPAKVIGAGCGGAICAPTKSVTFANNTGICNINYNLAEKDGGAIYATICDFSTRSPVYLSKNS AKENGGAICAKVLTVNANGPMMFFNNRAQKGGAIYVGSTVGDSTNPATSTLSLTSANGDMIFLGNTIDNRPGIRNSICVE GDGKITSLNAIGTSSLIFHDPIANKGPATTNPATLDTININTPGCSGSVKFSAETLTISEKLNPENATSVLFGKVVIGDG QLIVTNNATLNVLGLTAETGRLTLGSGAKIGLATVTGNQPTQENFVIKNLGFDAQSYLTPSYAAANVTTTNSKTITLEGS LNLASEDDAELYDNPLLHSSLSFPVATFVSNNNDPTKNNFSVGDLSIPEHYGYQGLWSSSWTPPPLAPTPDGGIPTGTNN RTLYVLWKPDPAYQAPYVLDPERRGELVSNTLWTSFLATQTFSEALQESLLCEEEGVLVSAKAIGSYIRHPSRNMHEGFK GRYGGYQASIGVHYPDDASLGLAFGQLYGQVKSSPYDAQSTERINVVSFFGKFPVATEKTLTNVSWEASYGYTVNLMKTN YQNPKTQHTRNSKGRWHNNTYYALVSVEHPFLTWCQLTRQFARDLDLSGFISAEFMGGWQNAFAETGALVRSFSRGRGHN ISLPIGLTSDWQTPFKKAPSTLTLKIAYKPDVYRVTPHNVVTILANGERIPIKGAQLARNGFFLQLHDSVKLSEYATGFL DYVLDTKKSYASHRVITGLQGKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 105132; Mature: 105001
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSLRSSSFCFLACLCSSGWVSAQTINQAKLTPPLYDIGEAFHLTSNCFIEDTYGAKFP CCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCHHHCCCEEEECCCEEEECCCCCCCC SSFLGSSTNFTIFGKKRSLTFSQCHAPVQNNASLISATETLTLTNLAKLVLNENVSTGQS HHHHCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHCCCCCCCCC GLISGKNISLTSSRSIVVTNNRTPYSPVVTTVTTPNNSTTVNCFFGSAIHTATSLDINKI CEECCCEEEEECCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCHHHHEECCCHHHH RKQITFDSNSGNFGAALLNDTAATCSIQNNSATISFSQNFAACGGGAIYDGTISIKNNSG HHEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCEEEEEEEEEECCCC PITLSGNTAANGLLTTTPDPAKVIGAGCGGAICAPTKSVTFANNTGICNINYNLAEKDGG CEEECCCCCCCCEEECCCCCHHEEECCCCCCEECCCCCEEEECCCCEEEEEEEEECCCCC AIYATICDFSTRSPVYLSKNSAKENGGAICAKVLTVNANGPMMFFNNRAQKGGAIYVGST EEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEECC VGDSTNPATSTLSLTSANGDMIFLGNTIDNRPGIRNSICVEGDGKITSLNAIGTSSLIFH CCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEE DPIANKGPATTNPATLDTININTPGCSGSVKFSAETLTISEKLNPENATSVLFGKVVIGD CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEC GQLIVTNNATLNVLGLTAETGRLTLGSGAKIGLATVTGNQPTQENFVIKNLGFDAQSYLT CEEEEECCCEEEEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCHHHHCC PSYAAANVTTTNSKTITLEGSLNLASEDDAELYDNPLLHSSLSFPVATFVSNNNDPTKNN CCCEEEEEEECCCEEEEEECCEEECCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC FSVGDLSIPEHYGYQGLWSSSWTPPPLAPTPDGGIPTGTNNRTLYVLWKPDPAYQAPYVL EEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE DPERRGELVSNTLWTSFLATQTFSEALQESLLCEEEGVLVSAKAIGSYIRHPSRNMHEGF CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCHHHCC KGRYGGYQASIGVHYPDDASLGLAFGQLYGQVKSSPYDAQSTERINVVSFFGKFPVATEK CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCH TLTNVSWEASYGYTVNLMKTNYQNPKTQHTRNSKGRWHNNTYYALVSVEHPFLTWCQLTR HEECEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEECCEEEEEEEECCCHHHHHHHHH QFARDLDLSGFISAEFMGGWQNAFAETGALVRSFSRGRGHNISLPIGLTSDWQTPFKKAP HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCC STLTLKIAYKPDVYRVTPHNVVTILANGERIPIKGAQLARNGFFLQLHDSVKLSEYATGF CEEEEEEEECCCEEEECCCCEEEEEECCCCCCCCCHHHHCCCCEEEEECCEEHHHHHHHH LDYVLDTKKSYASHRVITGLQGKF HHHHHHHHHHHCCCEEEECCCCCC >Mature Secondary Structure PLSLRSSSFCFLACLCSSGWVSAQTINQAKLTPPLYDIGEAFHLTSNCFIEDTYGAKFP CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCHHHCCCEEEECCCEEEECCCCCCCC SSFLGSSTNFTIFGKKRSLTFSQCHAPVQNNASLISATETLTLTNLAKLVLNENVSTGQS HHHHCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHCCCCCCCCC GLISGKNISLTSSRSIVVTNNRTPYSPVVTTVTTPNNSTTVNCFFGSAIHTATSLDINKI CEECCCEEEEECCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCHHHHEECCCHHHH RKQITFDSNSGNFGAALLNDTAATCSIQNNSATISFSQNFAACGGGAIYDGTISIKNNSG HHEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCEEEEEEEEEECCCC PITLSGNTAANGLLTTTPDPAKVIGAGCGGAICAPTKSVTFANNTGICNINYNLAEKDGG CEEECCCCCCCCEEECCCCCHHEEECCCCCCEECCCCCEEEECCCCEEEEEEEEECCCCC AIYATICDFSTRSPVYLSKNSAKENGGAICAKVLTVNANGPMMFFNNRAQKGGAIYVGST EEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEECC VGDSTNPATSTLSLTSANGDMIFLGNTIDNRPGIRNSICVEGDGKITSLNAIGTSSLIFH CCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEE DPIANKGPATTNPATLDTININTPGCSGSVKFSAETLTISEKLNPENATSVLFGKVVIGD CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEC GQLIVTNNATLNVLGLTAETGRLTLGSGAKIGLATVTGNQPTQENFVIKNLGFDAQSYLT CEEEEECCCEEEEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCHHHHCC PSYAAANVTTTNSKTITLEGSLNLASEDDAELYDNPLLHSSLSFPVATFVSNNNDPTKNN CCCEEEEEEECCCEEEEEECCEEECCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC FSVGDLSIPEHYGYQGLWSSSWTPPPLAPTPDGGIPTGTNNRTLYVLWKPDPAYQAPYVL EEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE DPERRGELVSNTLWTSFLATQTFSEALQESLLCEEEGVLVSAKAIGSYIRHPSRNMHEGF CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCHHHCC KGRYGGYQASIGVHYPDDASLGLAFGQLYGQVKSSPYDAQSTERINVVSFFGKFPVATEK CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCH TLTNVSWEASYGYTVNLMKTNYQNPKTQHTRNSKGRWHNNTYYALVSVEHPFLTWCQLTR HEECEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEECCEEEEEEEECCCHHHHHHHHH QFARDLDLSGFISAEFMGGWQNAFAETGALVRSFSRGRGHNISLPIGLTSDWQTPFKKAP HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCC STLTLKIAYKPDVYRVTPHNVVTILANGERIPIKGAQLARNGFFLQLHDSVKLSEYATGF CEEEEEEEECCCEEEECCCCEEEEEECCCCCCCCCHHHHCCCCEEEEECCEEHHHHHHHH LDYVLDTKKSYASHRVITGLQGKF HHHHHHHHHHHCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362 [H]