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The map label for this gene is xseB [H]

Identifier: 89898504

GI number: 89898504

Start: 804287

End: 804514

Strand: Direct

Name: xseB [H]

Synonym: CF0697

Alternate gene names: 89898504

Gene position: 804287-804514 (Clockwise)

Preceding gene: 89898503

Following gene: 89898505

Centisome position: 68.96

GC content: 38.16

Gene sequence:

>228_bases
ATGGAAGAAATTCCCTTTGAAAATGCTATGGAAAGGTTGGAAGAGATCGTAGATCTTATGAATCAACCCTCAACGTCTTT
AGATTCTTCTTTAAAACTTTATGAAGAAGCTGATGCTTTAATGCGTATTTGCGAATCGCGCATTCGTAAAGCAGAAGACC
GTGTACGCGAGTTATCCGAAAGGCGAAATGAAACTCTTCTTTCTGAAGAAGAATCTTTTGCGCATTAA

Upstream 100 bases:

>100_bases
CTTACACAAACACAGTTGTGTAAGGGTACGACTGCAGGACGGGGAAGCCACTCTTACTGTAACGGATATTCAGAATTTTG
AAACTCAAGAGTCCTAAATT

Downstream 100 bases:

>100_bases
CTGTAGAGTGAGTAATGTCCCGTAATGATTTGGATTCCCTAGCTCAAGAGCTGAGTTTTTTACAAAATCAATTAGACTCT
CTTGACTCTTTGGATGATAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MEEIPFENAMERLEEIVDLMNQPSTSLDSSLKLYEEADALMRICESRIRKAEDRVRELSERRNETLLSEEESFAH

Sequences:

>Translated_75_residues
MEEIPFENAMERLEEIVDLMNQPSTSLDSSLKLYEEADALMRICESRIRKAEDRVRELSERRNETLLSEEESFAH
>Mature_75_residues
MEEIPFENAMERLEEIVDLMNQPSTSLDSSLKLYEEADALMRICESRIRKAEDRVRELSERRNETLLSEEESFAH

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8861; Mature: 8861

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEIPFENAMERLEEIVDLMNQPSTSLDSSLKLYEEADALMRICESRIRKAEDRVRELSE
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRNETLLSEEESFAH
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MEEIPFENAMERLEEIVDLMNQPSTSLDSSLKLYEEADALMRICESRIRKAEDRVRELSE
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRNETLLSEEESFAH
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12682364 [H]