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The map label for this gene is yscU [H]

Identifier: 89898354

GI number: 89898354

Start: 643443

End: 644525

Strand: Direct

Name: yscU [H]

Synonym: CF0547

Alternate gene names: 89898354

Gene position: 643443-644525 (Clockwise)

Preceding gene: 89898352

Following gene: 89898355

Centisome position: 55.17

GC content: 36.93

Gene sequence:

>1083_bases
ATGGGTGAAAAAACAGAAAAGGCGACCCCGAAGCGTCTTAGAGACGCTAGGAAAAAAGGCCAGGTGGCAAAATCTCAAGA
TTTTCCTTCCGCAATCACCTTTATTGTTTCGATGTTCACAACATTTTACCTATCGTCGTTTTTTGCTAAACATCTTGGAA
GTTTTCTAGTTTCTATTTTTAAAGAAGCCCCAATAAATCATGATCCTAGAGTCACGTTATATTATTTACAAAACTGTTTA
ACTCTTATTTTAACGACTTCCTTACCTTTGCTTGGAGCAGTAGGATTTGTTGGTATTATTGTCGGATTTCTTGTTGTTGG
TCCGACTTTTTCTACAGAAGTTTTCAAACCAGACTTAAAAAAGTTTAATCCGATTGAAAACCTCAAACAAAAATTCAAGA
TGAAGACTTTGATTGAATTGTTAAAGTCTGTTTTGAAAATTTTTGGCGCGGCCTTGATATTGTATGTTACGTTAAAAAAC
CGCGTGCCATTGATCATAGAAACTGCGGGTGTATCTCCTCTCGTCATTGCCGCTATCTTTAAACAGATACTTTATAAAGC
AGTTACATCCATTGGTATTTTTTTCTTAGTCGTTGCAGTTCTTGACTTAGTGTACCAAAGAAAGAACTTCGCGAAAGAAC
TAAAAATGGAAAAGTTTGAGGTTAAACAAGAATTTAAGGATACAGAAGGTAATCCCGAGATTAAGGGACGCCGTCGCCAA
ATCGCACAAGAAATCGCTTATGAAGATACCTCTTCTCAAATCAAACATGCAAGCGCGGTAGTCTCAAACCCTAAGGATAT
TGCTGTGGCTATCGGTTATATGCCAGAAAAATATAAAGCTCCGTGGATTATTGCTATGGGAATTAATTTGCGTGCAAAAA
GAATCATTACAGAAGCTGAGAAATACGGCATTCCCATAATGAGAAATGTTCCTCTGGCGCATCAGCTTTGGGACGAAGGA
AAAGAGTTGAAGTTTATTCCAGAATCGACTTATGAAGCTATTGGAGAAATCCTTCTCTACATCACTTCTCTTAATGCTCA
AAATCCTAACAACAAAAACATTAACCAACACGATAATCTATAA

Upstream 100 bases:

>100_bases
GGCTCAATCCTCTAGGCTTCTCTCTTGTGAAAAACACGCTTATAGGGTAATTTGCAGATTATTCCTATTTAATAGCTCTT
TATCTAACTTTGGCCAAGCG

Downstream 100 bases:

>100_bases
TGAACAAGCTACTCAATTTTGTCAGTAGAACCTTTGGGGGAGATGCCGCCCTAAATATGATCAATAAATCGAGTGATCTC
ATCCTTGCCTTATGGATGAT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIFKEAPINHDPRVTLYYLQNCL
TLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKN
RVPLIIETAGVSPLVIAAIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEAEKYGIPIMRNVPLAHQLWDEG
KELKFIPESTYEAIGEILLYITSLNAQNPNNKNINQHDNL

Sequences:

>Translated_360_residues
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIFKEAPINHDPRVTLYYLQNCL
TLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKN
RVPLIIETAGVSPLVIAAIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEAEKYGIPIMRNVPLAHQLWDEG
KELKFIPESTYEAIGEILLYITSLNAQNPNNKNINQHDNL
>Mature_359_residues
GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIFKEAPINHDPRVTLYYLQNCLT
LILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNR
VPLIIETAGVSPLVIAAIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQI
AQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEAEKYGIPIMRNVPLAHQLWDEGK
ELKFIPESTYEAIGEILLYITSLNAQNPNNKNINQHDNL

Specific function: Component of the yop secretion machinery [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=351, Percent_Identity=27.9202279202279, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 40602; Mature: 40471

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIF
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEAPINHDPRVTLYYLQNCLTLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDLK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
KFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNRVPLIIETAGVSPLVIAAIF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
KQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEAE
HHHHHHHCCHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH
KYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSLNAQNPNNKNINQHDNL
HHCCCCEECCCHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIF
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEAPINHDPRVTLYYLQNCLTLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDLK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
KFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNRVPLIIETAGVSPLVIAAIF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
KQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
IAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEAE
HHHHHHHCCHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH
KYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSLNAQNPNNKNINQHDNL
HHCCCCEECCCHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9746557; 9748454; 11586360 [H]