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The map label for this gene is rpl25 [H]

Identifier: 89898001

GI number: 89898001

Start: 227867

End: 228424

Strand: Direct

Name: rpl25 [H]

Synonym: CF0194

Alternate gene names: 89898001

Gene position: 227867-228424 (Clockwise)

Preceding gene: 89897999

Following gene: 89898002

Centisome position: 19.54

GC content: 37.81

Gene sequence:

>558_bases
ATGGAGCTCGTAGTTACAAGTCGCGAGACTGATAAAAAATCTTTGCTTAAAAAAATTCGTCAAACAGGAGGCATTCCTGC
TGTTATTTATTCCGGCGGAAAGAGCGTGGCAAATATCGTTGTTGATGCTCACGTATTTAGCAAATTTTTATCTGGCCTAG
AAAGCGGTGCGCTATCTTCTACAATTTTTTCTTTATCTTACGAAGGTCGTATAATTAGGGCCCTAGTTAAAGATATTCAA
TATCAAGTGACCACATATCAAGTGATCCATTTAGATTTTGAAGAACTTATAGAAGATCGTGATGTGAAATTAAATATTCC
AATTCGCTGCATTAATGCTGTGGATTGTGTTGGCGTGAAATTAGGTGGATCCCTAAGACAGGTTATCCGTGCTTTGCGCG
TTGTATGTAAACCTAAAGATATTGTTCCTTTCTTAGAATTGGATGTTCGCTCATTGGGATTGTCTCAGACAAGAAAATTG
TCCGATATTAATATCCCTGCAGGACTTCGTCCTATTACTCCTCTTAAGGAAGTTGTCGTAACAGTATCTAGAAGATAA

Upstream 100 bases:

>100_bases
ACATGACAGTCGATGGTCCCCAGAGAAAAACCATTCTAGCTTTAGGAAAGAATGGCTTTAAAGGGTTCTTTTAGCTCAAG
ATTATGGAGAATAGCACATT

Downstream 100 bases:

>100_bases
TCTAATTATGACGATGCTGGTTGTTGCCATAGGAAATCCGGGACGTCAATATACATGGACGCGACATAATATAGGGTTTC
TATGTGCAGACAGGCTGCTT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MELVVTSRETDKKSLLKKIRQTGGIPAVIYSGGKSVANIVVDAHVFSKFLSGLESGALSSTIFSLSYEGRIIRALVKDIQ
YQVTTYQVIHLDFEELIEDRDVKLNIPIRCINAVDCVGVKLGGSLRQVIRALRVVCKPKDIVPFLELDVRSLGLSQTRKL
SDINIPAGLRPITPLKEVVVTVSRR

Sequences:

>Translated_185_residues
MELVVTSRETDKKSLLKKIRQTGGIPAVIYSGGKSVANIVVDAHVFSKFLSGLESGALSSTIFSLSYEGRIIRALVKDIQ
YQVTTYQVIHLDFEELIEDRDVKLNIPIRCINAVDCVGVKLGGSLRQVIRALRVVCKPKDIVPFLELDVRSLGLSQTRKL
SDINIPAGLRPITPLKEVVVTVSRR
>Mature_185_residues
MELVVTSRETDKKSLLKKIRQTGGIPAVIYSGGKSVANIVVDAHVFSKFLSGLESGALSSTIFSLSYEGRIIRALVKDIQ
YQVTTYQVIHLDFEELIEDRDVKLNIPIRCINAVDCVGVKLGGSLRQVIRALRVVCKPKDIVPFLELDVRSLGLSQTRKL
SDINIPAGLRPITPLKEVVVTVSRR

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 20442; Mature: 20442

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVVTSRETDKKSLLKKIRQTGGIPAVIYSGGKSVANIVVDAHVFSKFLSGLESGALSS
CEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
TIFSLSYEGRIIRALVKDIQYQVTTYQVIHLDFEELIEDRDVKLNIPIRCINAVDCVGVK
HHEEECCCCHHHHHHHHHHHHHHEEEEEEEECHHHHHCCCCEEEECCEEEECHHHEEEEE
LGGSLRQVIRALRVVCKPKDIVPFLELDVRSLGLSQTRKLSDINIPAGLRPITPLKEVVV
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHHHH
TVSRR
HHCCC
>Mature Secondary Structure
MELVVTSRETDKKSLLKKIRQTGGIPAVIYSGGKSVANIVVDAHVFSKFLSGLESGALSS
CEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
TIFSLSYEGRIIRALVKDIQYQVTTYQVIHLDFEELIEDRDVKLNIPIRCINAVDCVGVK
HHEEECCCCHHHHHHHHHHHHHHEEEEEEEECHHHHHCCCCEEEECCEEEECHHHEEEEE
LGGSLRQVIRALRVVCKPKDIVPFLELDVRSLGLSQTRKLSDINIPAGLRPITPLKEVVV
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHHHH
TVSRR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA