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The map label for this gene is 89885971

Identifier: 89885971

GI number: 89885971

Start: 242157

End: 243761

Strand: Reverse

Name: 89885971

Synonym: Rfer_4486

Alternate gene names: NA

Gene position: 243761-242157 (Counterclockwise)

Preceding gene: 89885976

Following gene: 89885970

Centisome position: 94.68

GC content: 58.13

Gene sequence:

>1605_bases
ATGAACCAGAACGTTCACGAGTCACCGAGCAAGGGCCATGCCGCCACGAAAGGCATGATGTTGTCCCTCTTCGAGAAGGA
TCAACTGCCAGCAGTTACCAGGACGCGAGCCAAGCCCGAGCAATCCCATGCTCAAAGCCGCATCTCGCCGGTGGTCGGAG
GTGTGCGCGTAACCAGCATCAATCCGGCGCTCACCGTCATGCCCGGTCAGGTGCGCCTTGACTCACTGAATGATGAAAAT
TGGCCCAAGCAGCTGTCTGAGTTCTTGTACGCCTACGGCCGCAGTCGCTGCAACAACTTCCAAACCAAAGTCTCCGAGGA
AACCCTGCGCAATCGCACGGACATCCTGTTTTCCAGCATTCGACTGCTGATGGAAGACAAACAACTCAGGCATGTCAAAA
CCCTCGCCCAGGTCAAGCCACGCCTGATGCCAAGGCTCTTTGAGTTGTGGACTGCCAAAGGGATTTCCAAACGCGCACAA
ATCAACTATTTCACCAACATGCGCTGGTTTTGGCGCATTTGCGGGATGGAGATCGGCGCCATTGCCAACTTCTCAAAGGA
AGCCGACGAATTCAAAATCAACCGCAACGCCGAGACCGATCGGTCATGGAAGGGCAACGGTGTGGATTTTGAGGTGGTCT
ACCAGAAACTCCATGAGCTCGACCCGGTGGGCGCGCGCCTGGCCCGTGCGATGAAACAGTACGGGCTGCGGCTCAAGGAA
TCCTTGCGCCTGGAGCCTCACCTGGCCGATGGCATCGACCGCTTGTTGATCACCAAGGGCGCCAAGACGGGCCGCCCGCG
CCAGTTGATGTTTGATGTCTTTGAGGACGAAAATTTTCGCCGGGTGCTCGATGAACTCAAGGCTGAGGTGCCACCTGAAT
GCCATCTGGCATGGACCAACCGCACCCTCAAGCAGGCCAAGGATCGCATGTACTACCTTGCGCGCCAGCTTGGACTCAAG
AAAAACGGCAGTCTCAAGGTCACCTTTCACGGCTTGCGCCACGACTTTGCCATCGACCAGCTCGAAGAACTCACCGGTCA
GACAGCCCCGGTGCGCGGGGGCATTGTCATCAACTACCGCGCGCTGAGCGCCGCCCGGCTCAAAGTCACCCAGGCCTTGG
GCCACAACCGTTTGAAAGTCACAGGCGCCTACTACGGCAGTTTCCTGAGCCTCGAGCGCGAGCAAATGCGCTCGGTCACC
CGGTCCTGGGATCGCATCGAGCCGGTGATGAAGGACGTTGGCCAGCTGATCGAGGGCAGCGGTGCAGGTAACCTCTTCTG
GATCGGCGGACGCTCGCAGGGATCCAAAAGTGAAGCCGCACCCTATGAATTCGTGTTCCCACCGGGCACCGATGACGCAA
TTGTCTTGCGGTTGGCGCCGCAGATTTGCGAACTGGTGCAGGGCGCCACCGGCGTCGATTGCATCGTGCACAACTGGAAA
AGCATGCCCAGCATGAAGCAAGCCTTGTGGGAAACCGATGGGACCCCGATTTTCCAAGGGGTGGGGCCGCTGGAATACAT
GAAGGCGATGCTTGAACAGCAAAAGGCTGCGCGCATGAAAGGTGGGGTCAGGTACGAAAGCGCCAAAGAAGCCGAACTCG
TCTGA

Upstream 100 bases:

>100_bases
ACCCTGTGAAATCCGTGATTGGGACACCAGTATGAATTTCAGAGGGAGTCCATTTTTCAATTTGCCAATCTGACGGCATA
CATCAACTAGGAGTGCAGAC

Downstream 100 bases:

>100_bases
TAAACACCCTGCAAACCATGAAACAAAGTGAGAACGCCATGAATTCAGCAGAACCATTGACCGCCTGCGCGACCAGCAGT
GGCATAAATCAGATCGACCT

Product: hypothetical protein

Products: NA

Alternate protein names: Poisomerase/Recombinase/Integrase; Phage Integrase N-Terminal SAM-Like Protein; Tyrosine Recombinase; Transcriptional Regulator Fis Family; Phage Integrase Family Protein; Phage Integrase N-Terminal SAM-Like; Regulatory Protein

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MNQNVHESPSKGHAATKGMMLSLFEKDQLPAVTRTRAKPEQSHAQSRISPVVGGVRVTSINPALTVMPGQVRLDSLNDEN
WPKQLSEFLYAYGRSRCNNFQTKVSEETLRNRTDILFSSIRLLMEDKQLRHVKTLAQVKPRLMPRLFELWTAKGISKRAQ
INYFTNMRWFWRICGMEIGAIANFSKEADEFKINRNAETDRSWKGNGVDFEVVYQKLHELDPVGARLARAMKQYGLRLKE
SLRLEPHLADGIDRLLITKGAKTGRPRQLMFDVFEDENFRRVLDELKAEVPPECHLAWTNRTLKQAKDRMYYLARQLGLK
KNGSLKVTFHGLRHDFAIDQLEELTGQTAPVRGGIVINYRALSAARLKVTQALGHNRLKVTGAYYGSFLSLEREQMRSVT
RSWDRIEPVMKDVGQLIEGSGAGNLFWIGGRSQGSKSEAAPYEFVFPPGTDDAIVLRLAPQICELVQGATGVDCIVHNWK
SMPSMKQALWETDGTPIFQGVGPLEYMKAMLEQQKAARMKGGVRYESAKEAELV

Sequences:

>Translated_534_residues
MNQNVHESPSKGHAATKGMMLSLFEKDQLPAVTRTRAKPEQSHAQSRISPVVGGVRVTSINPALTVMPGQVRLDSLNDEN
WPKQLSEFLYAYGRSRCNNFQTKVSEETLRNRTDILFSSIRLLMEDKQLRHVKTLAQVKPRLMPRLFELWTAKGISKRAQ
INYFTNMRWFWRICGMEIGAIANFSKEADEFKINRNAETDRSWKGNGVDFEVVYQKLHELDPVGARLARAMKQYGLRLKE
SLRLEPHLADGIDRLLITKGAKTGRPRQLMFDVFEDENFRRVLDELKAEVPPECHLAWTNRTLKQAKDRMYYLARQLGLK
KNGSLKVTFHGLRHDFAIDQLEELTGQTAPVRGGIVINYRALSAARLKVTQALGHNRLKVTGAYYGSFLSLEREQMRSVT
RSWDRIEPVMKDVGQLIEGSGAGNLFWIGGRSQGSKSEAAPYEFVFPPGTDDAIVLRLAPQICELVQGATGVDCIVHNWK
SMPSMKQALWETDGTPIFQGVGPLEYMKAMLEQQKAARMKGGVRYESAKEAELV
>Mature_534_residues
MNQNVHESPSKGHAATKGMMLSLFEKDQLPAVTRTRAKPEQSHAQSRISPVVGGVRVTSINPALTVMPGQVRLDSLNDEN
WPKQLSEFLYAYGRSRCNNFQTKVSEETLRNRTDILFSSIRLLMEDKQLRHVKTLAQVKPRLMPRLFELWTAKGISKRAQ
INYFTNMRWFWRICGMEIGAIANFSKEADEFKINRNAETDRSWKGNGVDFEVVYQKLHELDPVGARLARAMKQYGLRLKE
SLRLEPHLADGIDRLLITKGAKTGRPRQLMFDVFEDENFRRVLDELKAEVPPECHLAWTNRTLKQAKDRMYYLARQLGLK
KNGSLKVTFHGLRHDFAIDQLEELTGQTAPVRGGIVINYRALSAARLKVTQALGHNRLKVTGAYYGSFLSLEREQMRSVT
RSWDRIEPVMKDVGQLIEGSGAGNLFWIGGRSQGSKSEAAPYEFVFPPGTDDAIVLRLAPQICELVQGATGVDCIVHNWK
SMPSMKQALWETDGTPIFQGVGPLEYMKAMLEQQKAARMKGGVRYESAKEAELV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60526; Mature: 60526

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQNVHESPSKGHAATKGMMLSLFEKDQLPAVTRTRAKPEQSHAQSRISPVVGGVRVTSI
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCEEEEEC
NPALTVMPGQVRLDSLNDENWPKQLSEFLYAYGRSRCNNFQTKVSEETLRNRTDILFSSI
CCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RLLMEDKQLRHVKTLAQVKPRLMPRLFELWTAKGISKRAQINYFTNMRWFWRICGMEIGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCHHHH
IANFSKEADEFKINRNAETDRSWKGNGVDFEVVYQKLHELDPVGARLARAMKQYGLRLKE
HHCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHH
SLRLEPHLADGIDRLLITKGAKTGRPRQLMFDVFEDENFRRVLDELKAEVPPECHLAWTN
HCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECH
RTLKQAKDRMYYLARQLGLKKNGSLKVTFHGLRHDFAIDQLEELTGQTAPVRGGIVINYR
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEE
ALSAARLKVTQALGHNRLKVTGAYYGSFLSLEREQMRSVTRSWDRIEPVMKDVGQLIEGS
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GAGNLFWIGGRSQGSKSEAAPYEFVFPPGTDDAIVLRLAPQICELVQGATGVDCIVHNWK
CCCCEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEHCCHHHHHHHCCCCCHHHHHHHHH
SMPSMKQALWETDGTPIFQGVGPLEYMKAMLEQQKAARMKGGVRYESAKEAELV
CCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNQNVHESPSKGHAATKGMMLSLFEKDQLPAVTRTRAKPEQSHAQSRISPVVGGVRVTSI
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCEEEEEC
NPALTVMPGQVRLDSLNDENWPKQLSEFLYAYGRSRCNNFQTKVSEETLRNRTDILFSSI
CCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RLLMEDKQLRHVKTLAQVKPRLMPRLFELWTAKGISKRAQINYFTNMRWFWRICGMEIGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCHHHH
IANFSKEADEFKINRNAETDRSWKGNGVDFEVVYQKLHELDPVGARLARAMKQYGLRLKE
HHCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHH
SLRLEPHLADGIDRLLITKGAKTGRPRQLMFDVFEDENFRRVLDELKAEVPPECHLAWTN
HCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECH
RTLKQAKDRMYYLARQLGLKKNGSLKVTFHGLRHDFAIDQLEELTGQTAPVRGGIVINYR
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEE
ALSAARLKVTQALGHNRLKVTGAYYGSFLSLEREQMRSVTRSWDRIEPVMKDVGQLIEGS
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GAGNLFWIGGRSQGSKSEAAPYEFVFPPGTDDAIVLRLAPQICELVQGATGVDCIVHNWK
CCCCEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEHCCHHHHHHHCCCCCHHHHHHHHH
SMPSMKQALWETDGTPIFQGVGPLEYMKAMLEQQKAARMKGGVRYESAKEAELV
CCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA