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The map label for this gene is ynaI [H]

Identifier: 89256865

GI number: 89256865

Start: 1516303

End: 1517148

Strand: Reverse

Name: ynaI [H]

Synonym: FTL_1588

Alternate gene names: 89256865

Gene position: 1517148-1516303 (Counterclockwise)

Preceding gene: 89256866

Following gene: 89256859

Centisome position: 80.02

GC content: 30.61

Gene sequence:

>846_bases
TTGTACTTTTATTTGGCTACTGAGAAACTATTTTTGTGCACAGAACCTAGTTTATTTAGGTTTCTATATAAAAGTAAAAA
TATTGCTATCGAAAAGAAAAAAGCTGAAACAAAAGATGGTTATGATGATTTTAGAGATATCAATGCTATATTTAAAGCTT
TAGAGCTTGGAGCTATAGTAGTTTCAGTTATATTGATTTTGGCAGCTTTTCGTGTTCCTCTTACTGCTTTAGGAGCTTTC
AGTGGTGTTGCCTTGGCTGGTTTAACTCTTTCGCAAAGTACTCTGTTGACAAATCTATTTGGAGGCTTGTTTGTAGTATT
TAATCGTAAATATTCTGAGGGCGATATTATTTCTTCAGAGATAAATTCGACAATTAAATTTAGTGGTACTATCAAAAAAA
TTGGTACCTTAACTACTAGAGTTGATAATTCTGAAACAGCACCAATGCATATTCCAAATTCGGTGTTTCTTAATACTTGT
ATAACAACAACATCACGTCGAACTCATAGGCGCATAGTACAGTTTATAACTATTGATTATAAACATATTGATAAAATCCC
TGTTATTAAACAAAAGCTTTTAGAGATACTTAAATCACATCCAAATATTGACCAGAATAAAACTTTAGCTGTCTCATTAG
CATCAGGAGGTACCAATATTTCTGGTAAGCTAGAGGGTAGTTTTGGTAGTAGTGGTATTAATATACAAATTTATGCGATG
GTTAATAAAGTTTTCTTTAGTGACTTTATCAATGTTCAGGATGAAATTTTTATAAATATTGCCAAAGAATTAAATGATTT
AGATATAGAGTTTGCGATAAATCCAGTTACGTTACATAAATATTAG

Upstream 100 bases:

>100_bases
ATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGATTTGATAAAACCATTTCAGCATAT
ATAGGAATGATTAAATTAGC

Downstream 100 bases:

>100_bases
TAATCTAATCTAAGATAGTTAGATTTTTTATATTGCTAATACCCTCTAAACTCATAAGTAGCCTATCAAATCCTAAAGCA
ACTCCAGAACATTCAGGAAT

Product: mechanosensitive ion channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MYFYLATEKLFLCTEPSLFRFLYKSKNIAIEKKKAETKDGYDDFRDINAIFKALELGAIVVSVILILAAFRVPLTALGAF
SGVALAGLTLSQSTLLTNLFGGLFVVFNRKYSEGDIISSEINSTIKFSGTIKKIGTLTTRVDNSETAPMHIPNSVFLNTC
ITTTSRRTHRRIVQFITIDYKHIDKIPVIKQKLLEILKSHPNIDQNKTLAVSLASGGTNISGKLEGSFGSSGINIQIYAM
VNKVFFSDFINVQDEIFINIAKELNDLDIEFAINPVTLHKY

Sequences:

>Translated_281_residues
MYFYLATEKLFLCTEPSLFRFLYKSKNIAIEKKKAETKDGYDDFRDINAIFKALELGAIVVSVILILAAFRVPLTALGAF
SGVALAGLTLSQSTLLTNLFGGLFVVFNRKYSEGDIISSEINSTIKFSGTIKKIGTLTTRVDNSETAPMHIPNSVFLNTC
ITTTSRRTHRRIVQFITIDYKHIDKIPVIKQKLLEILKSHPNIDQNKTLAVSLASGGTNISGKLEGSFGSSGINIQIYAM
VNKVFFSDFINVQDEIFINIAKELNDLDIEFAINPVTLHKY
>Mature_281_residues
MYFYLATEKLFLCTEPSLFRFLYKSKNIAIEKKKAETKDGYDDFRDINAIFKALELGAIVVSVILILAAFRVPLTALGAF
SGVALAGLTLSQSTLLTNLFGGLFVVFNRKYSEGDIISSEINSTIKFSGTIKKIGTLTTRVDNSETAPMHIPNSVFLNTC
ITTTSRRTHRRIVQFITIDYKHIDKIPVIKQKLLEILKSHPNIDQNKTLAVSLASGGTNISGKLEGSFGSSGINIQIYAM
VNKVFFSDFINVQDEIFINIAKELNDLDIEFAINPVTLHKY

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=250, Percent_Identity=27.6, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 31276; Mature: 31276

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFYLATEKLFLCTEPSLFRFLYKSKNIAIEKKKAETKDGYDDFRDINAIFKALELGAIV
CEEEEEECEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VSVILILAAFRVPLTALGAFSGVALAGLTLSQSTLLTNLFGGLFVVFNRKYSEGDIISSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHEEEEEECCCCCCCEEHHH
INSTIKFSGTIKKIGTLTTRVDNSETAPMHIPNSVFLNTCITTTSRRTHRRIVQFITIDY
CCCEEEECCHHHHHHHEEEECCCCCCCCEECCCHHHHHHHHHCCCHHHHHHHHHHHEECH
KHIDKIPVIKQKLLEILKSHPNIDQNKTLAVSLASGGTNISGKLEGSFGSSGINIQIYAM
HHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEHH
VNKVFFSDFINVQDEIFINIAKELNDLDIEFAINPVTLHKY
HHHHHHHHHHCCCHHHHHEEHHHCCCCEEEEEECEEEEECC
>Mature Secondary Structure
MYFYLATEKLFLCTEPSLFRFLYKSKNIAIEKKKAETKDGYDDFRDINAIFKALELGAIV
CEEEEEECEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VSVILILAAFRVPLTALGAFSGVALAGLTLSQSTLLTNLFGGLFVVFNRKYSEGDIISSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHEEEEEECCCCCCCEEHHH
INSTIKFSGTIKKIGTLTTRVDNSETAPMHIPNSVFLNTCITTTSRRTHRRIVQFITIDY
CCCEEEECCHHHHHHHEEEECCCCCCCCEECCCHHHHHHHHHCCCHHHHHHHHHHHEECH
KHIDKIPVIKQKLLEILKSHPNIDQNKTLAVSLASGGTNISGKLEGSFGSSGINIQIYAM
HHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEHH
VNKVFFSDFINVQDEIFINIAKELNDLDIEFAINPVTLHKY
HHHHHHHHHHCCCHHHHHEEHHHCCCCEEEEEECEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]