Click here to switch to the map view.

The map label for this gene is flgD

Identifier: 89056698

GI number: 89056698

Start: 4312231

End: 4312896

Strand: Direct

Name: flgD

Synonym: Jann_4207

Alternate gene names: 89056698

Gene position: 4312231-4312896 (Clockwise)

Preceding gene: 89056697

Following gene: 89056701

Centisome position: 99.87

GC content: 59.31

Gene sequence:

>666_bases
ATGGACATTCTCCCAGCCGGTCAAACATCCCCCGGCACAGCCACTGCCGTTCAGGACAATACCACTGCCGCCTCGATCAC
GTCGGACTTTGACATGTTCCTGCGGCTTCTGACGACCCAGATGCAGAACCAGGATCCTTTGAATCCGTCGGATTCAACGG
AATACACCGCACAACTCGCGACGTTTTCCGGCGTGGAACAACAAGTGGAAACCAACGACCTGCTGCGTGATCTGCAGGCC
AGCTTCGCGTCGATGAACATGGGGCAACTCTCCGGCTGGATCGGGATGGAGGCGCGGGCAGATATGCCCGTGAACTTCAC
CGGCCAGCCCACGACTGTTCAGATCACGCCGAACTCCTTTGCGGACCGGGTAGAATTGGTCGTGCGCAATCAGGCCGGGG
ATGTCGTCGCATCCACTCCCGCCGTGCTTGGGCAAGAGCCGTTTGCCTGGGATGGACGCGGCAATGACGGCTTTCCACTG
CCCAACGGCACCTACACCCTGTCCGCCCAAAGTTGGAGCGGCGAGAATATTCTGGATGAGCGCGCCGCCTTCATTTTCAG
CGAGATTTCAGAAGCGCAAACCATCGCCGGGGAGGTGTACGTTACAATGGAAAACGGCGTGACCATTCCCGCTGACACGG
TGCAGGGGCTCAGGCGCGCGAATTAG

Upstream 100 bases:

>100_bases
GCCGCCCCCTCAACCGTTGATGACCCAACCGATGCCTCACCGCCCGAAATAGGCCGCGCTGCACGCAGCGGACTAGACCT
CAGATTATAGGAGCCGAACC

Downstream 100 bases:

>100_bases
GGCAACTGACAGCCCTTGCATCGCCCAACTTCCGGCGCGGAGGACCTGACGTCCAACCTGCCAATAACTGGCGACGCGCT
CAGCTAAAACAGCACCCAGA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: Flagellar Basal Body Rod Protein; Basal-Body Rod Protein FlgD; Flagellar Basal-Body Rod Protein FlgD; FlgD Protein; Flagellar Basal-Body Rod Protein; Flagellar Hook Capping Protein FlgD; Flagellar Hook Assembly Protein; Flagellar Hook Assembly Protein FlgD; Basal-Body Rod Protein; Flagellar Hook Initiation Protein FlgD

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDILPAGQTSPGTATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQVETNDLLRDLQA
SFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPNSFADRVELVVRNQAGDVVASTPAVLGQEPFAWDGRGNDGFPL
PNGTYTLSAQSWSGENILDERAAFIFSEISEAQTIAGEVYVTMENGVTIPADTVQGLRRAN

Sequences:

>Translated_221_residues
MDILPAGQTSPGTATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQVETNDLLRDLQA
SFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPNSFADRVELVVRNQAGDVVASTPAVLGQEPFAWDGRGNDGFPL
PNGTYTLSAQSWSGENILDERAAFIFSEISEAQTIAGEVYVTMENGVTIPADTVQGLRRAN
>Mature_221_residues
MDILPAGQTSPGTATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQVETNDLLRDLQA
SFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPNSFADRVELVVRNQAGDVVASTPAVLGQEPFAWDGRGNDGFPL
PNGTYTLSAQSWSGENILDERAAFIFSEISEAQTIAGEVYVTMENGVTIPADTVQGLRRAN

Specific function: Required For Flagellar Hook Formation. May Act As A Scaffolding Protein. [C]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23735; Mature: 23735

Theoretical pI: Translated: 3.72; Mature: 3.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDILPAGQTSPGTATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLA
CCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
TFSGVEQQVETNDLLRDLQASFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPNSF
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEECCCCCCCCCEEECCCCEEEEECCCCH
ADRVELVVRNQAGDVVASTPAVLGQEPFAWDGRGNDGFPLPNGTYTLSAQSWSGENILDE
HHHHHEEEECCCCCEEECCCHHHCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHH
RAAFIFSEISEAQTIAGEVYVTMENGVTIPADTVQGLRRAN
HHHHHHHHHHHHHHEEEEEEEEECCCEECCHHHHHHHHCCC
>Mature Secondary Structure
MDILPAGQTSPGTATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLA
CCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
TFSGVEQQVETNDLLRDLQASFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPNSF
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEECCCCCCCCCEEECCCCEEEEECCCCH
ADRVELVVRNQAGDVVASTPAVLGQEPFAWDGRGNDGFPLPNGTYTLSAQSWSGENILDE
HHHHHEEEECCCCCEEECCCHHHCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHH
RAAFIFSEISEAQTIAGEVYVTMENGVTIPADTVQGLRRAN
HHHHHHHHHHHHHHEEEEEEEEECCCEECCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA