Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89056661

Identifier: 89056661

GI number: 89056661

Start: 4279275

End: 4279610

Strand: Direct

Name: 89056661

Synonym: Jann_4170

Alternate gene names: NA

Gene position: 4279275-4279610 (Clockwise)

Preceding gene: 89056660

Following gene: 89056662

Centisome position: 99.1

GC content: 64.29

Gene sequence:

>336_bases
ATGGACCGTCGATACCGTCCCCCCGCCGCCTTTGCCGCCACAAGCGCGGTCTTGCATGTCGCGGCTTTGCTGCTGTCTGG
ATTTGCCGCAAACCCGGGGCCGTCTGTGGTTGGCGCGCTTATCTGGACGGCCTTGGCGTACGGCCTTTTCAACGGCAGTC
GCGCAACGGCCTACCTGGCTTTCCTGGTGGCGCTCGCTGGGATCAGCGTTGCGCTCAGCATAGCGATGGGGGCGATCTCC
ACCCCCGTTCAGTGGACGTGGGCGGCCATTGTTGTCGCAGACGCATTCGTCGCTGTAACGCTGTTCATGTTGCTATGGCG
CCCCCGTCCCGCCTGA

Upstream 100 bases:

>100_bases
CCTGGCGGCGGGAGGGAGCCTGCACCCTACTCGCTGCAAGAGCATGTGGACGATATTCTGGCGTGGGGCGTGGCAGGCTA
CCCCTGCCGCGACGATTGAT

Downstream 100 bases:

>100_bases
CACTTTGCGCGAATCACCTTGTCTGCAAAGCTGAGCCCCAGGGAAACCGGAGCGGTCAGATGACGCCAGATATGCACAAC
GCCCTGCGCGTGGTCGGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MDRRYRPPAAFAATSAVLHVAALLLSGFAANPGPSVVGALIWTALAYGLFNGSRATAYLAFLVALAGISVALSIAMGAIS
TPVQWTWAAIVVADAFVAVTLFMLLWRPRPA

Sequences:

>Translated_111_residues
MDRRYRPPAAFAATSAVLHVAALLLSGFAANPGPSVVGALIWTALAYGLFNGSRATAYLAFLVALAGISVALSIAMGAIS
TPVQWTWAAIVVADAFVAVTLFMLLWRPRPA
>Mature_111_residues
MDRRYRPPAAFAATSAVLHVAALLLSGFAANPGPSVVGALIWTALAYGLFNGSRATAYLAFLVALAGISVALSIAMGAIS
TPVQWTWAAIVVADAFVAVTLFMLLWRPRPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11574; Mature: 11574

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRYRPPAAFAATSAVLHVAALLLSGFAANPGPSVVGALIWTALAYGLFNGSRATAYLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
FLVALAGISVALSIAMGAISTPVQWTWAAIVVADAFVAVTLFMLLWRPRPA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDRRYRPPAAFAATSAVLHVAALLLSGFAANPGPSVVGALIWTALAYGLFNGSRATAYLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
FLVALAGISVALSIAMGAISTPVQWTWAAIVVADAFVAVTLFMLLWRPRPA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA