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The map label for this gene is pcaH [H]

Identifier: 89056654

GI number: 89056654

Start: 4273173

End: 4273889

Strand: Direct

Name: pcaH [H]

Synonym: Jann_4163

Alternate gene names: 89056654

Gene position: 4273173-4273889 (Clockwise)

Preceding gene: 89056653

Following gene: 89056655

Centisome position: 98.96

GC content: 59.83

Gene sequence:

>717_bases
ATGAGCATTCATGCCCCCCGCGATCTGTCTCGCCATCCTGCCGCGCTGACACCACGCTACAGAAGCTCTGTCCTGCGATC
GCCGAAACAGCGGCTGATCGCGCTGCCCGATGGTCCTGCGGATCGTACGGGGCCGACCTTTGGCCACGACATGATCGGCG
CATTGGACCACGATCTGATCCTGAACCACGCCCACGACGGTGCGCCTGTAGGGGAGCGGATCATCGTCCACGGCCGCGTG
CGGGATGAGGATGAACGACCCGTTCGGAATACTTTGGTGGAGGTTTGGCAGGCCAACGCGTCGGGTCGCTATCGACATAA
GAAAGATACGTTCATGGGCGCGATAGATCCCAACTTTGGCGGTTGCGGGCGGACAGTGACGGACGATCAGGGCTACTACC
GGTTCAACACGATCAAGCCGGGCGCCTATCCGTGGCCCAATGGCGGCAACAACTGGCGGCCTGCCCATATCCATTTCAGC
GTCTTTGGGGCCGCATTTTGCCAGCGCCTGATCACTCAGCTTTACTTCGAAGGCGACCCTCTGATCCCGCTATGTGACAT
CGTTCAGACTGTGCCCGACCCGCGGGATATCGACATGTTGATGGCCAAGCTGGATATGGAAACCACCCTGCCTTTCGACA
GCATAGCCTACCGGTTCGACATCGTCTTGCGAGGCGCAAGATCGACCCCGTTCGAAAACCGGATGGAGGGCAACTGA

Upstream 100 bases:

>100_bases
ATGTGATCCAGGCCTTCCTCCACGTGGCCGTCTATGCGGGCGTGCCCAAGGCGAACCATGCGATCAAATTGGCCAAGCAG
ACATTCGCGGAGATGGAGGC

Downstream 100 bases:

>100_bases
TGTCTGATCTCAAGGAAACGCCATCGCAAACCGCCGGTCCATACGTGCACATCGGCCTTGCGACCGAAGCGGCGGGCTTC
ACCACGTTCCCGGCCTTTGG

Product: protocatechuate 3,4-dioxygenase subunit beta

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSIHAPRDLSRHPAALTPRYRSSVLRSPKQRLIALPDGPADRTGPTFGHDMIGALDHDLILNHAHDGAPVGERIIVHGRV
RDEDERPVRNTLVEVWQANASGRYRHKKDTFMGAIDPNFGGCGRTVTDDQGYYRFNTIKPGAYPWPNGGNNWRPAHIHFS
VFGAAFCQRLITQLYFEGDPLIPLCDIVQTVPDPRDIDMLMAKLDMETTLPFDSIAYRFDIVLRGARSTPFENRMEGN

Sequences:

>Translated_238_residues
MSIHAPRDLSRHPAALTPRYRSSVLRSPKQRLIALPDGPADRTGPTFGHDMIGALDHDLILNHAHDGAPVGERIIVHGRV
RDEDERPVRNTLVEVWQANASGRYRHKKDTFMGAIDPNFGGCGRTVTDDQGYYRFNTIKPGAYPWPNGGNNWRPAHIHFS
VFGAAFCQRLITQLYFEGDPLIPLCDIVQTVPDPRDIDMLMAKLDMETTLPFDSIAYRFDIVLRGARSTPFENRMEGN
>Mature_237_residues
SIHAPRDLSRHPAALTPRYRSSVLRSPKQRLIALPDGPADRTGPTFGHDMIGALDHDLILNHAHDGAPVGERIIVHGRVR
DEDERPVRNTLVEVWQANASGRYRHKKDTFMGAIDPNFGGCGRTVTDDQGYYRFNTIKPGAYPWPNGGNNWRPAHIHFSV
FGAAFCQRLITQLYFEGDPLIPLCDIVQTVPDPRDIDMLMAKLDMETTLPFDSIAYRFDIVLRGARSTPFENRMEGN

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 26802; Mature: 26670

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIHAPRDLSRHPAALTPRYRSSVLRSPKQRLIALPDGPADRTGPTFGHDMIGALDHDLI
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCHHHH
LNHAHDGAPVGERIIVHGRVRDEDERPVRNTLVEVWQANASGRYRHKKDTFMGAIDPNFG
EECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
GCGRTVTDDQGYYRFNTIKPGAYPWPNGGNNWRPAHIHFSVFGAAFCQRLITQLYFEGDP
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCC
LIPLCDIVQTVPDPRDIDMLMAKLDMETTLPFDSIAYRFDIVLRGARSTPFENRMEGN
CCHHHHHHHHCCCCCHHHHHHHHHCCHHCCCHHHHHEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SIHAPRDLSRHPAALTPRYRSSVLRSPKQRLIALPDGPADRTGPTFGHDMIGALDHDLI
CCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCHHHH
LNHAHDGAPVGERIIVHGRVRDEDERPVRNTLVEVWQANASGRYRHKKDTFMGAIDPNFG
EECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
GCGRTVTDDQGYYRFNTIKPGAYPWPNGGNNWRPAHIHFSVFGAAFCQRLITQLYFEGDP
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCC
LIPLCDIVQTVPDPRDIDMLMAKLDMETTLPFDSIAYRFDIVLRGARSTPFENRMEGN
CCHHHHHHHHCCCCCHHHHHHHHHCCHHCCCHHHHHEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407791; 115853; 3194022; 7990141; 9254599; 9254600; 9298971 [H]