| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is appD [H]
Identifier: 89056622
GI number: 89056622
Start: 4240526
End: 4241539
Strand: Direct
Name: appD [H]
Synonym: Jann_4131
Alternate gene names: 89056622
Gene position: 4240526-4241539 (Clockwise)
Preceding gene: 89056619
Following gene: 89056623
Centisome position: 98.21
GC content: 62.43
Gene sequence:
>1014_bases ATGTCGGCTGAGGCCCCGCTTCTGGAAGTCACGGACCTTCAGACCACATTCGACATTACCAAAAAGCTCTCCATCCGGGC CGTCGATGGGGTCAGCTTTTCCGTGAATGCCGGAGAGACGCTGGCCATTGTGGGTGAAAGCGGGTCCGGGAAATCGGTGA CGAGCCTGTCGATCATGGGGTTGCTGCCGAAGGACGTGGGCCGTGTGTCAGGCGGCAGCATCAAGCTGCATGGCCGCGAT ATCACCAACCTGTCTGAGCCGGAAATGCGAGAAATCCGCGGCAAGGAGATCGGCATGATCTTCCAGGAGCCGATGACCAG CCTGAACCCAGTGCACACTGTCGGGCAGCAGATCGCAGAGATGGCGATCCGGCATGAGGGGCTGTCGCCATCCAAGGCTC GCACCCGCGCAATAGAGATGCTGGACCTCGTGGGCATCCCCGAGCCCGCCACGCGGGTGGACAATTACCCCCACCAGATG TCGGGCGGTATGCGGCAGCGGGCGATGATCGCCATGGCGCTGGCGTGCGAGCCGCGCATCCTGATCGCTGACGAGCCGAC AACCGCGTTGGATGTGACCATTCAGGCGCAGATGCTGGAGCTGATGCAGGACCTGCAAGACAAGCTCGGCATGGCGATCA TCTTTATCACCCATGATCTGGGGGTTGTGGCCGAAGTCGCCGACCGCGTCGTTGTCATGTACGCGGCCCAAGTCGTTGAG ACGGCGGGTGTGGAAGATATCTTCGAGACGCCACGCATGCCCTATACCGCCGGGTTGATGAATTCGATCCCGCGCCTGGG ATCGTCGGTCAACAAGGTGCGGCTTGAGGCCATCCCCGGCAGCGTGCCCGCCCTGACCAATCTGCCCGACGGCTGCCGCT TCAATCCCCGCTGCGCTTTCGCGACGGATGAATGTCGCGCGACAGAGCCTACACTGGATGCCGCAAGCGCGGGCCACATG ATCCGCTGCGCCCGGTGGCAGGAGCTGTCGCTTGCCCAAGGATCAAGCCAATGA
Upstream 100 bases:
>100_bases AAATCAGCCTGACCCGCCGTGCCCAGACCCGCACCGCTCAGGCAAGGAGTGTCCGCGATGAAAAAGACATCAGATCGTGT AGGCGCGGGACAGTTGCGCC
Downstream 100 bases:
>100_bases CCGCGCCCCTGCTGCAAGTCGACGCGTTGAAGAAGTACTTCCCGATTGAGGGCGGCATTTTCAAGCGCACCGTCAACAAC GTCAAAGCGGTCGACGATGT
Product: oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MSAEAPLLEVTDLQTTFDITKKLSIRAVDGVSFSVNAGETLAIVGESGSGKSVTSLSIMGLLPKDVGRVSGGSIKLHGRD ITNLSEPEMREIRGKEIGMIFQEPMTSLNPVHTVGQQIAEMAIRHEGLSPSKARTRAIEMLDLVGIPEPATRVDNYPHQM SGGMRQRAMIAMALACEPRILIADEPTTALDVTIQAQMLELMQDLQDKLGMAIIFITHDLGVVAEVADRVVVMYAAQVVE TAGVEDIFETPRMPYTAGLMNSIPRLGSSVNKVRLEAIPGSVPALTNLPDGCRFNPRCAFATDECRATEPTLDAASAGHM IRCARWQELSLAQGSSQ
Sequences:
>Translated_337_residues MSAEAPLLEVTDLQTTFDITKKLSIRAVDGVSFSVNAGETLAIVGESGSGKSVTSLSIMGLLPKDVGRVSGGSIKLHGRD ITNLSEPEMREIRGKEIGMIFQEPMTSLNPVHTVGQQIAEMAIRHEGLSPSKARTRAIEMLDLVGIPEPATRVDNYPHQM SGGMRQRAMIAMALACEPRILIADEPTTALDVTIQAQMLELMQDLQDKLGMAIIFITHDLGVVAEVADRVVVMYAAQVVE TAGVEDIFETPRMPYTAGLMNSIPRLGSSVNKVRLEAIPGSVPALTNLPDGCRFNPRCAFATDECRATEPTLDAASAGHM IRCARWQELSLAQGSSQ >Mature_336_residues SAEAPLLEVTDLQTTFDITKKLSIRAVDGVSFSVNAGETLAIVGESGSGKSVTSLSIMGLLPKDVGRVSGGSIKLHGRDI TNLSEPEMREIRGKEIGMIFQEPMTSLNPVHTVGQQIAEMAIRHEGLSPSKARTRAIEMLDLVGIPEPATRVDNYPHQMS GGMRQRAMIAMALACEPRILIADEPTTALDVTIQAQMLELMQDLQDKLGMAIIFITHDLGVVAEVADRVVVMYAAQVVET AGVEDIFETPRMPYTAGLMNSIPRLGSSVNKVRLEAIPGSVPALTNLPDGCRFNPRCAFATDECRATEPTLDAASAGHMI RCARWQELSLAQGSSQ
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI4505771, Length=234, Percent_Identity=30.3418803418803, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI9961250, Length=234, Percent_Identity=30.3418803418803, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI9961252, Length=234, Percent_Identity=30.3418803418803, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=28.099173553719, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI21536376, Length=207, Percent_Identity=28.5024154589372, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI9665248, Length=245, Percent_Identity=25.7142857142857, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI116734710, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI42741659, Length=236, Percent_Identity=28.3898305084746, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536378, Length=226, Percent_Identity=28.7610619469027, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1789963, Length=317, Percent_Identity=53.3123028391167, Blast_Score=340, Evalue=6e-95, Organism=Escherichia coli, GI48994883, Length=322, Percent_Identity=48.4472049689441, Blast_Score=303, Evalue=7e-84, Organism=Escherichia coli, GI1787759, Length=321, Percent_Identity=44.8598130841121, Blast_Score=281, Evalue=4e-77, Organism=Escherichia coli, GI145693107, Length=267, Percent_Identity=55.4307116104869, Blast_Score=278, Evalue=4e-76, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=48.4496124031008, Blast_Score=245, Evalue=3e-66, Organism=Escherichia coli, GI1789962, Length=325, Percent_Identity=38.7692307692308, Blast_Score=236, Evalue=1e-63, Organism=Escherichia coli, GI1787500, Length=329, Percent_Identity=38.6018237082067, Blast_Score=233, Evalue=2e-62, Organism=Escherichia coli, GI1787548, Length=324, Percent_Identity=38.8888888888889, Blast_Score=227, Evalue=9e-61, Organism=Escherichia coli, GI1787758, Length=329, Percent_Identity=34.6504559270517, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=39.5744680851064, Blast_Score=158, Evalue=4e-40, Organism=Escherichia coli, GI48994997, Length=263, Percent_Identity=37.2623574144487, Blast_Score=152, Evalue=4e-38, Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=34.2307692307692, Blast_Score=151, Evalue=7e-38, Organism=Escherichia coli, GI1786398, Length=243, Percent_Identity=34.9794238683128, Blast_Score=141, Evalue=8e-35, Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=37.2093023255814, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1787712, Length=248, Percent_Identity=33.4677419354839, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI87081791, Length=262, Percent_Identity=33.587786259542, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=33.7552742616034, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1788761, Length=266, Percent_Identity=29.3233082706767, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787370, Length=269, Percent_Identity=30.1115241635688, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787105, Length=236, Percent_Identity=33.0508474576271, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1788225, Length=248, Percent_Identity=32.258064516129, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1789672, Length=259, Percent_Identity=31.6602316602317, Blast_Score=115, Evalue=6e-27, Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=31.0204081632653, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1787089, Length=231, Percent_Identity=33.7662337662338, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI87081834, Length=193, Percent_Identity=37.3056994818653, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=36.2790697674419, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1788644, Length=251, Percent_Identity=34.6613545816733, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI87081709, Length=247, Percent_Identity=26.7206477732794, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1786872, Length=208, Percent_Identity=30.2884615384615, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1789873, Length=220, Percent_Identity=32.7272727272727, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786319, Length=241, Percent_Identity=31.5352697095436, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=32.5581395348837, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=32.3671497584541, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790467, Length=248, Percent_Identity=27.4193548387097, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI48995001, Length=235, Percent_Identity=29.7872340425532, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789991, Length=242, Percent_Identity=30.9917355371901, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1790534, Length=237, Percent_Identity=29.957805907173, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87082267, Length=234, Percent_Identity=28.6324786324786, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1790162, Length=229, Percent_Identity=26.2008733624454, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1787792, Length=224, Percent_Identity=28.125, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI48994943, Length=235, Percent_Identity=30.6382978723404, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1786803, Length=225, Percent_Identity=28, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1786345, Length=256, Percent_Identity=28.90625, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790544, Length=277, Percent_Identity=25.9927797833935, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786253, Length=231, Percent_Identity=30.7359307359307, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1789593, Length=214, Percent_Identity=26.1682242990654, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1790190, Length=257, Percent_Identity=25.6809338521401, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1787164, Length=251, Percent_Identity=28.2868525896414, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1790739, Length=244, Percent_Identity=27.4590163934426, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787972, Length=242, Percent_Identity=29.3388429752066, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789586, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788472, Length=248, Percent_Identity=26.2096774193548, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787112, Length=239, Percent_Identity=27.1966527196653, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789864, Length=255, Percent_Identity=24.3137254901961, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788897, Length=224, Percent_Identity=28.125, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788053, Length=195, Percent_Identity=27.1794871794872, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786654, Length=217, Percent_Identity=28.110599078341, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1787182, Length=236, Percent_Identity=23.3050847457627, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=29.1479820627803, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193209708, Length=241, Percent_Identity=29.8755186721992, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193202349, Length=240, Percent_Identity=28.3333333333333, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17541710, Length=225, Percent_Identity=32.8888888888889, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17567265, Length=245, Percent_Identity=25.3061224489796, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI25146777, Length=227, Percent_Identity=29.9559471365639, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193208177, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71992290, Length=233, Percent_Identity=32.618025751073, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17558664, Length=237, Percent_Identity=29.1139240506329, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569145, Length=224, Percent_Identity=29.9107142857143, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211015, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569143, Length=215, Percent_Identity=33.0232558139535, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71996809, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211017, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533608, Length=208, Percent_Identity=27.4038461538462, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115535101, Length=210, Percent_Identity=30, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17567269, Length=233, Percent_Identity=25.7510729613734, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI115534520, Length=210, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=230, Percent_Identity=31.304347826087, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641565, Length=224, Percent_Identity=33.9285714285714, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI28574150, Length=215, Percent_Identity=27.906976744186, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007328, Length=215, Percent_Identity=27.906976744186, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI85726357, Length=245, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI17136662, Length=219, Percent_Identity=30.5936073059361, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357907, Length=224, Percent_Identity=29.9107142857143, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24643674, Length=207, Percent_Identity=23.1884057971014, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36268; Mature: 36137
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEAPLLEVTDLQTTFDITKKLSIRAVDGVSFSVNAGETLAIVGESGSGKSVTSLSIMG CCCCCCEEEEECCHHHHHHHHCEEEEEECCEEEEECCCCEEEEEECCCCCCCEEEEEEEE LLPKDVGRVSGGSIKLHGRDITNLSEPEMREIRGKEIGMIFQEPMTSLNPVHTVGQQIAE CCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHCHHHHHHHHCCCHHHHHHHHHHH MAIRHEGLSPSKARTRAIEMLDLVGIPEPATRVDNYPHQMSGGMRQRAMIAMALACEPRI HHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCHHHHHHHHHHHHCCCEE LIADEPTTALDVTIQAQMLELMQDLQDKLGMAIIFITHDLGVVAEVADRVVVMYAAQVVE EEECCCCCEEEEEHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHHH TAGVEDIFETPRMPYTAGLMNSIPRLGSSVNKVRLEAIPGSVPALTNLPDGCRFNPRCAF HCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC ATDECRATEPTLDAASAGHMIRCARWQELSLAQGSSQ CCCCCCCCCCCCCHHCCCCEEEECCCCHHHCCCCCCC >Mature Secondary Structure SAEAPLLEVTDLQTTFDITKKLSIRAVDGVSFSVNAGETLAIVGESGSGKSVTSLSIMG CCCCCEEEEECCHHHHHHHHCEEEEEECCEEEEECCCCEEEEEECCCCCCCEEEEEEEE LLPKDVGRVSGGSIKLHGRDITNLSEPEMREIRGKEIGMIFQEPMTSLNPVHTVGQQIAE CCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHCHHHHHHHHCCCHHHHHHHHHHH MAIRHEGLSPSKARTRAIEMLDLVGIPEPATRVDNYPHQMSGGMRQRAMIAMALACEPRI HHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCHHHHHHHHHHHHCCCEE LIADEPTTALDVTIQAQMLELMQDLQDKLGMAIIFITHDLGVVAEVADRVVVMYAAQVVE EEECCCCCEEEEEHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHHH TAGVEDIFETPRMPYTAGLMNSIPRLGSSVNKVRLEAIPGSVPALTNLPDGCRFNPRCAF HCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC ATDECRATEPTLDAASAGHMIRCARWQELSLAQGSSQ CCCCCCCCCCCCCHHCCCCEEEECCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]