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The map label for this gene is sigK [H]

Identifier: 89056512

GI number: 89056512

Start: 4124992

End: 4125375

Strand: Direct

Name: sigK [H]

Synonym: Jann_4021

Alternate gene names: 89056512

Gene position: 4124992-4125375 (Clockwise)

Preceding gene: 89056506

Following gene: 89056513

Centisome position: 95.53

GC content: 56.77

Gene sequence:

>384_bases
ATGCAGGATGTCATGGCCACCCTTTGGCGCAAAGCACATATGTACGATCCGTCCCGCGCCTCTGTGGCGACTTGGATCTT
TACGATTGCCCGCAATCGAAAGATCGATCTGCTGCGCCGCTATGCCCGCCCTGACCCGGAAGAATTGCCCTGGGGCCCCG
AACAGGCCCCCAATCCGGCCGATGTCATTGCCCTGCAACAGGACACAACCCGCCTGTCCCAGGCCCTTGCCACCCTGCCC
GAGAAGCAGCGAGAACTTATCAAACACGCCTATTTTGGAGACCTGAGCCATTCTGAAATCGCGATAGAAACCGGTTTGCC
CCTTGGCACAATCAAGTCGCGGATTAGGTTAGCGCTCGATCGACTTAGACACTCGATGAATTGA

Upstream 100 bases:

>100_bases
GGATCAGTCCGCTTTTGCCGAGATTTTTCGGCAATTCGCCCCCAGGGTGAAAGCGTTCCTGATTAAATCCGGGGCTGATC
CCAGCCTCGCTGAAGATTGT

Downstream 100 bases:

>100_bases
AACGACCATAAAGAACGACACACGACCATGACTGAAATGAACCACTCCGTCCCCGACGACATGCTGATGGGCTATGCGTC
CGGATCGCTTGCGAAAGCCT

Product: FecI-like sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MQDVMATLWRKAHMYDPSRASVATWIFTIARNRKIDLLRRYARPDPEELPWGPEQAPNPADVIALQQDTTRLSQALATLP
EKQRELIKHAYFGDLSHSEIAIETGLPLGTIKSRIRLALDRLRHSMN

Sequences:

>Translated_127_residues
MQDVMATLWRKAHMYDPSRASVATWIFTIARNRKIDLLRRYARPDPEELPWGPEQAPNPADVIALQQDTTRLSQALATLP
EKQRELIKHAYFGDLSHSEIAIETGLPLGTIKSRIRLALDRLRHSMN
>Mature_127_residues
MQDVMATLWRKAHMYDPSRASVATWIFTIARNRKIDLLRRYARPDPEELPWGPEQAPNPADVIALQQDTTRLSQALATLP
EKQRELIKHAYFGDLSHSEIAIETGLPLGTIKSRIRLALDRLRHSMN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 14570; Mature: 14570

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDVMATLWRKAHMYDPSRASVATWIFTIARNRKIDLLRRYARPDPEELPWGPEQAPNPA
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCH
DVIALQQDTTRLSQALATLPEKQRELIKHAYFGDLSHSEIAIETGLPLGTIKSRIRLALD
HEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEHCCCCCHHHHHHHHHHHHH
RLRHSMN
HHHHHCC
>Mature Secondary Structure
MQDVMATLWRKAHMYDPSRASVATWIFTIARNRKIDLLRRYARPDPEELPWGPEQAPNPA
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCH
DVIALQQDTTRLSQALATLPEKQRELIKHAYFGDLSHSEIAIETGLPLGTIKSRIRLALD
HEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEHCCCCCHHHHHHHHHHHHH
RLRHSMN
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]