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The map label for this gene is yrpB [H]

Identifier: 89056467

GI number: 89056467

Start: 4075837

End: 4076862

Strand: Direct

Name: yrpB [H]

Synonym: Jann_3976

Alternate gene names: 89056467

Gene position: 4075837-4076862 (Clockwise)

Preceding gene: 89056466

Following gene: 89056468

Centisome position: 94.39

GC content: 62.28

Gene sequence:

>1026_bases
ATGGCCACACGCTTCACAAAGACATTCGGACTGAAATACCCCTTGGCACAGGCGGGCATGGCCTTTGCCGGTGCAGAGCC
GGACCTGGCCATCGCGGTCTGCAAAGGCGGCGGCATCGGGTCAATCGGGGTTGGTTTCACCCCCGGAGAGGTCTTGCGCG
GGATGATTGGGACGATCCGCGCCGCCACTGACGCGCCGTTCAACATCAATTTCATCACCTGTTTCGGAAACGATGAACAA
GTCCGCGTCGCCGCCGAGGAAAAGGTGCCGGTGGTGTCCTTTCACTGGGGCCACCCCCCGGCGGATCAGATCAAAATGCT
CAAAGATGCAGGCTGTTCGATCTGGGTACAGGTTGGCACGGTCGAGGATGGGTTGCAGGCCGTAGACTATGGCGCTGACG
TGATCGTCGCCCAGGGTTGGGAGGCAGGCGGGCACAATTATGGCGGCATGGGATCGATGGCGCTGATCCCCGCGATGGTG
GACGCTGTGGGCGATCGCGCGATGGTCCTTGCATCAGGCGGTATCTCCGATGCGCGTGCGGCAGCGGCAGCGATGGTTCT
GGGCGCGGACGGCGTTTGGGTCGGCACCCGACTGGTCGCCAGCACCGAAGCCACGGTTCACCGGGAACATCACGCAAGAT
TGGTCGCGGCAAGCGGCACCGATACCACCCGGTCTGCCGTGTTCGGGCCGGAAATGCCCCACTTCAACCCGATGCGACTG
CTCAAGGTGCGTGTCACCGAGGAGTTTGAAGGGCGCTTGCAGGATGTCCCGATGGAGCGGGATAATGAGCCGATCATCGG
CGAAACCCTTCTTGGGGGGCAAAAGCACATCAAGCGTCGGTTCGACGTGATCCTGCCAACGGAAGACACCACCGGCGACT
TTGAGGAAATGGCGTGGCTTGCCGGTCAGGGCGTGGGGCAGGTCAGGGATATCAAGCCCGCCGCACAGATCGTGGAGGAG
ATGATGGACGGGGCAAACGACCTTCTTAATCGCATGGGCGCGTCGATCCCGACGGCAGCGGAGTGA

Upstream 100 bases:

>100_bases
CTAGAATTGCGCGCGCATGTCCTACAGTCGCCACGCAGCTTTCGCCTAGCCTGATCCACGCCGCCCGGATGCGGGCGGTC
ACTGATTGGGAGGGACGACA

Downstream 100 bases:

>100_bases
CCGCCGTGAACGACAAGGTGACGGCGGCCAAAACTGCTTTGCGCGCCATGGCCGGCCTGAACCCGCTGGTGCGCGATCCG
TTCGACCTGTCGACCGGAGG

Product: 2-nitropropane dioxygenase

Products: NA

Alternate protein names: Nitroalkane oxidase [H]

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MATRFTKTFGLKYPLAQAGMAFAGAEPDLAIAVCKGGGIGSIGVGFTPGEVLRGMIGTIRAATDAPFNINFITCFGNDEQ
VRVAAEEKVPVVSFHWGHPPADQIKMLKDAGCSIWVQVGTVEDGLQAVDYGADVIVAQGWEAGGHNYGGMGSMALIPAMV
DAVGDRAMVLASGGISDARAAAAAMVLGADGVWVGTRLVASTEATVHREHHARLVAASGTDTTRSAVFGPEMPHFNPMRL
LKVRVTEEFEGRLQDVPMERDNEPIIGETLLGGQKHIKRRFDVILPTEDTTGDFEEMAWLAGQGVGQVRDIKPAAQIVEE
MMDGANDLLNRMGASIPTAAE

Sequences:

>Translated_341_residues
MATRFTKTFGLKYPLAQAGMAFAGAEPDLAIAVCKGGGIGSIGVGFTPGEVLRGMIGTIRAATDAPFNINFITCFGNDEQ
VRVAAEEKVPVVSFHWGHPPADQIKMLKDAGCSIWVQVGTVEDGLQAVDYGADVIVAQGWEAGGHNYGGMGSMALIPAMV
DAVGDRAMVLASGGISDARAAAAAMVLGADGVWVGTRLVASTEATVHREHHARLVAASGTDTTRSAVFGPEMPHFNPMRL
LKVRVTEEFEGRLQDVPMERDNEPIIGETLLGGQKHIKRRFDVILPTEDTTGDFEEMAWLAGQGVGQVRDIKPAAQIVEE
MMDGANDLLNRMGASIPTAAE
>Mature_340_residues
ATRFTKTFGLKYPLAQAGMAFAGAEPDLAIAVCKGGGIGSIGVGFTPGEVLRGMIGTIRAATDAPFNINFITCFGNDEQV
RVAAEEKVPVVSFHWGHPPADQIKMLKDAGCSIWVQVGTVEDGLQAVDYGADVIVAQGWEAGGHNYGGMGSMALIPAMVD
AVGDRAMVLASGGISDARAAAAAMVLGADGVWVGTRLVASTEATVHREHHARLVAASGTDTTRSAVFGPEMPHFNPMRLL
KVRVTEEFEGRLQDVPMERDNEPIIGETLLGGQKHIKRRFDVILPTEDTTGDFEEMAWLAGQGVGQVRDIKPAAQIVEEM
MDGANDLLNRMGASIPTAAE

Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]

COG id: COG2070

COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitronate monooxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004136
- InterPro:   IPR013785 [H]

Pfam domain/function: PF03060 NPD [H]

EC number: =1.13.12.16 [H]

Molecular weight: Translated: 36059; Mature: 35927

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRFTKTFGLKYPLAQAGMAFAGAEPDLAIAVCKGGGIGSIGVGFTPGEVLRGMIGTIR
CCCCCCHHHCCCCCHHHCCCEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
AATDAPFNINFITCFGNDEQVRVAAEEKVPVVSFHWGHPPADQIKMLKDAGCSIWVQVGT
HCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECC
VEDGLQAVDYGADVIVAQGWEAGGHNYGGMGSMALIPAMVDAVGDRAMVLASGGISDARA
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHH
AAAAMVLGADGVWVGTRLVASTEATVHREHHARLVAASGTDTTRSAVFGPEMPHFNPMRL
HHEEEEECCCCEEEEEEEEECCHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCCEEE
LKVRVTEEFEGRLQDVPMERDNEPIIGETLLGGQKHIKRRFDVILPTEDTTGDFEEMAWL
EEEEECHHHCCHHHCCCCCCCCCCCCCHHHCCCHHHHHHHCCEEECCCCCCCCHHHHHHH
AGQGVGQVRDIKPAAQIVEEMMDGANDLLNRMGASIPTAAE
HCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ATRFTKTFGLKYPLAQAGMAFAGAEPDLAIAVCKGGGIGSIGVGFTPGEVLRGMIGTIR
CCCCCHHHCCCCCHHHCCCEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
AATDAPFNINFITCFGNDEQVRVAAEEKVPVVSFHWGHPPADQIKMLKDAGCSIWVQVGT
HCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECC
VEDGLQAVDYGADVIVAQGWEAGGHNYGGMGSMALIPAMVDAVGDRAMVLASGGISDARA
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHH
AAAAMVLGADGVWVGTRLVASTEATVHREHHARLVAASGTDTTRSAVFGPEMPHFNPMRL
HHEEEEECCCCEEEEEEEEECCHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCCEEE
LKVRVTEEFEGRLQDVPMERDNEPIIGETLLGGQKHIKRRFDVILPTEDTTGDFEEMAWL
EEEEECHHHCCHHHCCCCCCCCCCCCCHHHCCCHHHHHHHCCEEECCCCCCCCHHHHHHH
AGQGVGQVRDIKPAAQIVEEMMDGANDLLNRMGASIPTAAE
HCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]