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The map label for this gene is rhmR [H]

Identifier: 89056441

GI number: 89056441

Start: 4049559

End: 4050362

Strand: Direct

Name: rhmR [H]

Synonym: Jann_3950

Alternate gene names: 89056441

Gene position: 4049559-4050362 (Clockwise)

Preceding gene: 89056437

Following gene: 89056442

Centisome position: 93.78

GC content: 64.55

Gene sequence:

>804_bases
ATGGGGAGGCAGGTCGTGGCCCGGCACAAGGAAAGCTCAATCGTCACAAAGTGCGCGGTGATCATGGACGTCATCAGCCA
GGCGCGCCAGCCCCTGCCGTTCTCGGAAATCGTCGCACAGTCCGGCTTTGTCAAAAGCTCCTGCCACCGGATCCTCGCCG
TGCTGCAAAGCGAGGACATGATCAACTACGACAAGGCGAGCCGAACGTATTTCACCGGCACGCGCCTGCGGCTCTGGGCG
CGGTCATCGTGGCATCGCACCGATATCTCGGACGTGGCGGTGCCCACGATGGATGCGCTGAGCGAAACGGCAGGCATGAA
CGCCGCGCTGTCGATCCAGGATGACGGGTTCATTCTGTATCTGCGCACCTCCGATCACCTGTCGCTGCGCCTGGCCGCCC
GCGCGGGAGACAGGGCCCCACTGCACAACACCGCCGCTGGCAAGGTCTTTCTAGCCTTCATGACCGACAAGCGCCGCGCC
ACGACGCTGGCCTCCCTCAAGCTGGAGAGGTTCACCGAGCATACGATGACCACACCCGAAGCGATCGAGGCCGAGATCCC
AAACATCCGCGCGCAGGGTTACGGGATGTCGATCCGGGAGGAATATCTGCACGTCATCGGCATGGCCGCCCCGATCCGCG
ATGCGCAAGGGGATGTGACCGCCTGCCTGTCCGTCTGGACCATCACCGACGCGGCCACGCCCGAACAGGTGGAACGGCTG
GCCCCGGACCTGATCCGGGCCGCCGATGACATTTCCGCGCTTAGCGGGTGGTCGCCAGAGACGCCAACGGACGCGGGGTC
TTGA

Upstream 100 bases:

>100_bases
GAACTGTTGTTCCGTAAAATAAGGCTATCCATCGTTGCCGATGGGTCAACCATTAATTTTCCGGCGGCGCTGGCTGCACG
CGGGTCCTCAGGGTTCGCTT

Downstream 100 bases:

>100_bases
CCCACCTGCAACACTCTCACAAAATGAAACTTGAGTTCTGCAATGTGAGACTTTTTCATGGGCCTGCCCAACGCGTTTGC
GACAACACCGCCCGGGTCGC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MGRQVVARHKESSIVTKCAVIMDVISQARQPLPFSEIVAQSGFVKSSCHRILAVLQSEDMINYDKASRTYFTGTRLRLWA
RSSWHRTDISDVAVPTMDALSETAGMNAALSIQDDGFILYLRTSDHLSLRLAARAGDRAPLHNTAAGKVFLAFMTDKRRA
TTLASLKLERFTEHTMTTPEAIEAEIPNIRAQGYGMSIREEYLHVIGMAAPIRDAQGDVTACLSVWTITDAATPEQVERL
APDLIRAADDISALSGWSPETPTDAGS

Sequences:

>Translated_267_residues
MGRQVVARHKESSIVTKCAVIMDVISQARQPLPFSEIVAQSGFVKSSCHRILAVLQSEDMINYDKASRTYFTGTRLRLWA
RSSWHRTDISDVAVPTMDALSETAGMNAALSIQDDGFILYLRTSDHLSLRLAARAGDRAPLHNTAAGKVFLAFMTDKRRA
TTLASLKLERFTEHTMTTPEAIEAEIPNIRAQGYGMSIREEYLHVIGMAAPIRDAQGDVTACLSVWTITDAATPEQVERL
APDLIRAADDISALSGWSPETPTDAGS
>Mature_266_residues
GRQVVARHKESSIVTKCAVIMDVISQARQPLPFSEIVAQSGFVKSSCHRILAVLQSEDMINYDKASRTYFTGTRLRLWAR
SSWHRTDISDVAVPTMDALSETAGMNAALSIQDDGFILYLRTSDHLSLRLAARAGDRAPLHNTAAGKVFLAFMTDKRRAT
TLASLKLERFTEHTMTTPEAIEAEIPNIRAQGYGMSIREEYLHVIGMAAPIRDAQGDVTACLSVWTITDAATPEQVERLA
PDLIRAADDISALSGWSPETPTDAGS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788581, Length=253, Percent_Identity=27.6679841897233, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788131, Length=246, Percent_Identity=27.6422764227642, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786468, Length=247, Percent_Identity=25.9109311740891, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082359, Length=246, Percent_Identity=21.5447154471545, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789999, Length=240, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29264; Mature: 29132

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRQVVARHKESSIVTKCAVIMDVISQARQPLPFSEIVAQSGFVKSSCHRILAVLQSEDM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCC
INYDKASRTYFTGTRLRLWARSSWHRTDISDVAVPTMDALSETAGMNAALSIQDDGFILY
CCCCCCCCEEECCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCEEEE
LRTSDHLSLRLAARAGDRAPLHNTAAGKVFLAFMTDKRRATTLASLKLERFTEHTMTTPE
EEECCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCH
AIEAEIPNIRAQGYGMSIREEYLHVIGMAAPIRDAQGDVTACLSVWTITDAATPEQVERL
HHHHCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEECCCCCHHHHHHH
APDLIRAADDISALSGWSPETPTDAGS
HHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GRQVVARHKESSIVTKCAVIMDVISQARQPLPFSEIVAQSGFVKSSCHRILAVLQSEDM
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCC
INYDKASRTYFTGTRLRLWARSSWHRTDISDVAVPTMDALSETAGMNAALSIQDDGFILY
CCCCCCCCEEECCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCEEEE
LRTSDHLSLRLAARAGDRAPLHNTAAGKVFLAFMTDKRRATTLASLKLERFTEHTMTTPE
EEECCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCH
AIEAEIPNIRAQGYGMSIREEYLHVIGMAAPIRDAQGDVTACLSVWTITDAATPEQVERL
HHHHCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEECCCCCHHHHHHH
APDLIRAADDISALSGWSPETPTDAGS
HHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]