| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056016
Identifier: 89056016
GI number: 89056016
Start: 3583605
End: 3584162
Strand: Direct
Name: 89056016
Synonym: Jann_3525
Alternate gene names: NA
Gene position: 3583605-3584162 (Clockwise)
Preceding gene: 89056015
Following gene: 89056020
Centisome position: 82.99
GC content: 47.13
Gene sequence:
>558_bases TTGATCGAAGAAGAAGGGGGGCGCATCGAAAAAAATGTTTCTGAACTCATTGGGCCTGAATTCGTACAAAAGCCCATATT CATTCTGAATGGACAGGTTTTTCCTAATCCTGTCTTGTTCTCGAATTCAAGCATCCAGACTCCGGTTCTTCGCCCTCTTC TGGGACCCGTGCATGGTGATTGCCATAGCCAAAACGTATTTGTAAAGGCCGGCAAAGATTCCTCAGTTCTTGACCTAAGT ATTATTGACTTAGCAACATTCCAACCCGACTCACCGATATTTTTCGATCATGCGTACTTAGAGCTTGCAACATTGCTCCG AAAGCTGAACCAGTTGGGGGAGCGCCGTTGGTGCAATTTGGTGGAAGGCCTATCCAAAGAGTGTTCAGAGCAAAAAGTCG AGCCTAGCGAACGCGGATGGCTCGAGGACATTTTGGCTGCTCGCAAAGATGTTTTCCGATTGGCGGATGAGCAATATCCT GACCGACAAGACGATTTGCGCCTGCAATTTCTGCTTGCTCAAGTCAGCGCTGGTTTAGCTTTCCTGCACAAAATTTGA
Upstream 100 bases:
>100_bases CCTACATTGAATTTTCAAAGGCAGCCTGGACGCCAGACCTTTTTTTCTCGGAGATCAGCGCTCTGCCGTACAAGTAATTT CCAATATACTGGGATACAAA
Downstream 100 bases:
>100_bases CCTGCTCCCCTTGGAGTCCGCTAATTTAGGTTAGCACTGTTCAGGTTCTGGTCTTCCTTTGACCGGTTAGCATATTCGTG TGGCGTCAGGCCAGCGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MIEEEGGRIEKNVSELIGPEFVQKPIFILNGQVFPNPVLFSNSSIQTPVLRPLLGPVHGDCHSQNVFVKAGKDSSVLDLS IIDLATFQPDSPIFFDHAYLELATLLRKLNQLGERRWCNLVEGLSKECSEQKVEPSERGWLEDILAARKDVFRLADEQYP DRQDDLRLQFLLAQVSAGLAFLHKI
Sequences:
>Translated_185_residues MIEEEGGRIEKNVSELIGPEFVQKPIFILNGQVFPNPVLFSNSSIQTPVLRPLLGPVHGDCHSQNVFVKAGKDSSVLDLS IIDLATFQPDSPIFFDHAYLELATLLRKLNQLGERRWCNLVEGLSKECSEQKVEPSERGWLEDILAARKDVFRLADEQYP DRQDDLRLQFLLAQVSAGLAFLHKI >Mature_185_residues MIEEEGGRIEKNVSELIGPEFVQKPIFILNGQVFPNPVLFSNSSIQTPVLRPLLGPVHGDCHSQNVFVKAGKDSSVLDLS IIDLATFQPDSPIFFDHAYLELATLLRKLNQLGERRWCNLVEGLSKECSEQKVEPSERGWLEDILAARKDVFRLADEQYP DRQDDLRLQFLLAQVSAGLAFLHKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20884; Mature: 20884
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEEEGGRIEKNVSELIGPEFVQKPIFILNGQVFPNPVLFSNSSIQTPVLRPLLGPVHGD CCCCCCCCHHHHHHHHHCHHHHHCCEEEECCCCCCCCEEECCCCCCCHHHHHHHCCCCCC CHSQNVFVKAGKDSSVLDLSIIDLATFQPDSPIFFDHAYLELATLLRKLNQLGERRWCNL CCCCCEEEEECCCCCEEEEEEHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH VEGLSKECSEQKVEPSERGWLEDILAARKDVFRLADEQYPDRQDDLRLQFLLAQVSAGLA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FLHKI HHHCC >Mature Secondary Structure MIEEEGGRIEKNVSELIGPEFVQKPIFILNGQVFPNPVLFSNSSIQTPVLRPLLGPVHGD CCCCCCCCHHHHHHHHHCHHHHHCCEEEECCCCCCCCEEECCCCCCCHHHHHHHCCCCCC CHSQNVFVKAGKDSSVLDLSIIDLATFQPDSPIFFDHAYLELATLLRKLNQLGERRWCNL CCCCCEEEEECCCCCEEEEEEHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH VEGLSKECSEQKVEPSERGWLEDILAARKDVFRLADEQYPDRQDDLRLQFLLAQVSAGLA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FLHKI HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA