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The map label for this gene is ydfI [H]

Identifier: 89056006

GI number: 89056006

Start: 3571302

End: 3571946

Strand: Direct

Name: ydfI [H]

Synonym: Jann_3515

Alternate gene names: 89056006

Gene position: 3571302-3571946 (Clockwise)

Preceding gene: 89056004

Following gene: 89056007

Centisome position: 82.71

GC content: 64.34

Gene sequence:

>645_bases
GTGACCGATCATACTGTCCTCATCGTCGAGGATCGCCCCGATATCGCGGACAACCTTTGTGCTGCCGTCAGCGCCACAGA
CGGAATTGCGGTGGCTGCCGTGGCCGGGGATCTGGACCGGGGGTTGCAACTTCTGTTCGATCTCAAGCCCCGCGTGTTGC
TGGTGGACATTGGCCTGCCAGACGGCAGCGGCGTGGATGCCGTGCGGGCGGCGGCCCAGGCCGATTGGACTGTAGACGCC
TTGGTGATTTCCATCTTCGGGGACGAGGCTCGCGTGATCGAGGCCATTCGGGCCGGCGCGAAGGGTTACGTGCTGAAGGG
CGGCGATCTGAGCCATATTGGCGAAGACATCCAGTCCGTCCTCGCCGGTGGCAGCCCCATCAGCCCCTCTATCGCGCGCC
ATCTTCTGGCGGTCCTCAACGATCCGCGCGACGCACCCGCCATGCAGGACGCACCCGCCCTGACCAACCGCGAGACGGAG
ATCCTTCGCTCCGTCTCCCGCGGCTACAAACGCCACGAAATTGCTGCCCAGCTGGGGATTTCGGCCGGCACCGTGGGCAA
TCACATCACCAGCATCTATCGCAAGCTGGAGGTGTCCTCCAACATCGAGGCGGTGGCCATCGCCTCCCGGAGTGGCATGT
TGTGA

Upstream 100 bases:

>100_bases
TATCTCTTCTGACCTGCGGTTGAACATATGTGGATTCACACATGTTGCCCGATTGTCGCGCGTGTTTATGGTAAACACAG
TGTTTCCAAGGAATGCCTGA

Downstream 100 bases:

>100_bases
ACGGAAAGATCTTGCGGATTTCGGTGGCGATGGCGCTTTGGATCGCATCGCTGACCGCGCTTTTGTTTGCCCTGAATATC
GGACGCGCCGTCCCTATTGA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTDHTVLIVEDRPDIADNLCAAVSATDGIAVAAVAGDLDRGLQLLFDLKPRVLLVDIGLPDGSGVDAVRAAAQADWTVDA
LVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSVLAGGSPISPSIARHLLAVLNDPRDAPAMQDAPALTNRETE
ILRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASRSGML

Sequences:

>Translated_214_residues
MTDHTVLIVEDRPDIADNLCAAVSATDGIAVAAVAGDLDRGLQLLFDLKPRVLLVDIGLPDGSGVDAVRAAAQADWTVDA
LVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSVLAGGSPISPSIARHLLAVLNDPRDAPAMQDAPALTNRETE
ILRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASRSGML
>Mature_213_residues
TDHTVLIVEDRPDIADNLCAAVSATDGIAVAAVAGDLDRGLQLLFDLKPRVLLVDIGLPDGSGVDAVRAAAQADWTVDAL
VISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSVLAGGSPISPSIARHLLAVLNDPRDAPAMQDAPALTNRETEI
LRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASRSGML

Specific function: Member of the two-component regulatory system ydfH/ydfI. Regulates the transcription of ydfJ by binding to its promoter region [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=205, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788222, Length=164, Percent_Identity=26.8292682926829, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790102, Length=181, Percent_Identity=30.3867403314917, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786747, Length=157, Percent_Identity=31.2101910828025, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22348; Mature: 22216

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDHTVLIVEDRPDIADNLCAAVSATDGIAVAAVAGDLDRGLQLLFDLKPRVLLVDIGLP
CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCC
DGSGVDAVRAAAQADWTVDALVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSV
CCCCHHHHHHHHHCCCHHHHEEEEHCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
LAGGSPISPSIARHLLAVLNDPRDAPAMQDAPALTNRETEILRSVSRGYKRHEIAAQLGI
HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCC
SAGTVGNHITSIYRKLEVSSNIEAVAIASRSGML
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure 
TDHTVLIVEDRPDIADNLCAAVSATDGIAVAAVAGDLDRGLQLLFDLKPRVLLVDIGLP
CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCC
DGSGVDAVRAAAQADWTVDALVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSV
CCCCHHHHHHHHHCCCHHHHEEEEHCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
LAGGSPISPSIARHLLAVLNDPRDAPAMQDAPALTNRETEILRSVSRGYKRHEIAAQLGI
HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCC
SAGTVGNHITSIYRKLEVSSNIEAVAIASRSGML
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]