| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055984
Identifier: 89055984
GI number: 89055984
Start: 3546720
End: 3547796
Strand: Direct
Name: 89055984
Synonym: Jann_3493
Alternate gene names: NA
Gene position: 3546720-3547796 (Clockwise)
Preceding gene: 89055983
Following gene: 89055986
Centisome position: 82.14
GC content: 66.57
Gene sequence:
>1077_bases ATGTGTGCGGCTGATATTGCCTGCGGCCTGAGGCGCGCCTTCGGCGCTGTTCTGTTAGCCGCCTTCGGCGCGCTCCTCCT CGCTCCGCTCCTCGCAGCGGCGGTGAACGCGCAGGACTACGAGATTGAGGATCGCCGGGAGTATCCCGGGACGGGCGCGG CTTTGCTGCGGGTGATCTCCACCGCTGATCTGGATGTGTTCGAGCCGTTTTTGCTGCGTTTTCAAGAGGGCAACCCGGAG GTAGGCATTGATTACATCGCCGTCTCCTCGGCCGAGCTGAACCGTGCGATCCGGGGCGGGGCGGCGTTTGATCTGGCGCT GTCGTCGGCCATGGATCTGCAATTCACGCTGGCCAATGACGGCTACGCCCAAAGCTATGCCAGCAGCGTCACGGCGGGCC TGCCCGATTGGGCGCGGTGGAACGACCAGCTATTCGCCTTCACCGCAGAACCCGCGGTAATCGTCATCAACGAGGCGCGA TTTGAGGGCTTGCCCCTGCCCCGCACCCGCGCGGAACTGGTGACGCTTCTGCGCGACAACGCGGACCGGTTCGCGGGCCG GTTGGGGACCTATGATTTGCGCGCCTCGGGCCTTGGGTATCTGTTCGCAACCCAGGAGGCGCGGTCGTCCGACGCCTATT GGCGGTTGACGGAGGTGATGGGGCGGCTGGATGCGCAGCTTTACTGCTGCTCCAGCCAGATGATCGACGCGGTGGCCAGC GGGGAGTTGGCGCTGGCCTACAACGTCCTGGGCTCCTATGCGGCGCAGCGGCTGAACACGGACGCGGGCCTTGCGGTGCT GCCGTTCGAGGACTTCGCCAATGTCATGCTGCGCACGGCGTTGATCCCAGCGACCGCGACCGAAGTGGACGCAGCCGGGG CCATGCTGGACGCGTTGCTGCGCGAAGGGATGGGAGAGGGCTCTGCCGCGCCGGTCCTGCCCCCCCTGCAATCGCGCGAC GACGCCGAGGGGTCGCCCTTCGGGCCGATCCGCCTGGGGCCGGCCCTGATGGTCTACCTGGATCGGCTGAACCGGGAGAG CTTTCTCGCCGCCTGGGACGCAGCGATGGAACAGTAA
Upstream 100 bases:
>100_bases GGATCGTCGGATCGGGCCTTGGCCTGACCATCGCGGACGAGGCGCTGCGCGCCCATGGCGGGCGGCTCGAACTGGGGTGT TCAGACGAAGGGAGCGGGGC
Downstream 100 bases:
>100_bases CGCACCTTCGGTGCAACTGCTCAACGCACCTTCGGTGCAACTGCTCAACGCACCTGCGGTGCAACTGCTCAACGCACCTG CGGTGCAACTGCTCAACGCA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: ABC-Type Fe3+ Transporter Periplasmic Protein; Iron ABC Transporter; HAMP Domain-Containing; Two-Component Sensor Histidine Kinase
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MCAADIACGLRRAFGAVLLAAFGALLLAPLLAAAVNAQDYEIEDRREYPGTGAALLRVISTADLDVFEPFLLRFQEGNPE VGIDYIAVSSAELNRAIRGGAAFDLALSSAMDLQFTLANDGYAQSYASSVTAGLPDWARWNDQLFAFTAEPAVIVINEAR FEGLPLPRTRAELVTLLRDNADRFAGRLGTYDLRASGLGYLFATQEARSSDAYWRLTEVMGRLDAQLYCCSSQMIDAVAS GELALAYNVLGSYAAQRLNTDAGLAVLPFEDFANVMLRTALIPATATEVDAAGAMLDALLREGMGEGSAAPVLPPLQSRD DAEGSPFGPIRLGPALMVYLDRLNRESFLAAWDAAMEQ
Sequences:
>Translated_358_residues MCAADIACGLRRAFGAVLLAAFGALLLAPLLAAAVNAQDYEIEDRREYPGTGAALLRVISTADLDVFEPFLLRFQEGNPE VGIDYIAVSSAELNRAIRGGAAFDLALSSAMDLQFTLANDGYAQSYASSVTAGLPDWARWNDQLFAFTAEPAVIVINEAR FEGLPLPRTRAELVTLLRDNADRFAGRLGTYDLRASGLGYLFATQEARSSDAYWRLTEVMGRLDAQLYCCSSQMIDAVAS GELALAYNVLGSYAAQRLNTDAGLAVLPFEDFANVMLRTALIPATATEVDAAGAMLDALLREGMGEGSAAPVLPPLQSRD DAEGSPFGPIRLGPALMVYLDRLNRESFLAAWDAAMEQ >Mature_358_residues MCAADIACGLRRAFGAVLLAAFGALLLAPLLAAAVNAQDYEIEDRREYPGTGAALLRVISTADLDVFEPFLLRFQEGNPE VGIDYIAVSSAELNRAIRGGAAFDLALSSAMDLQFTLANDGYAQSYASSVTAGLPDWARWNDQLFAFTAEPAVIVINEAR FEGLPLPRTRAELVTLLRDNADRFAGRLGTYDLRASGLGYLFATQEARSSDAYWRLTEVMGRLDAQLYCCSSQMIDAVAS GELALAYNVLGSYAAQRLNTDAGLAVLPFEDFANVMLRTALIPATATEVDAAGAMLDALLREGMGEGSAAPVLPPLQSRD DAEGSPFGPIRLGPALMVYLDRLNRESFLAAWDAAMEQ
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38384; Mature: 38384
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCAADIACGLRRAFGAVLLAAFGALLLAPLLAAAVNAQDYEIEDRREYPGTGAALLRVIS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH TADLDVFEPFLLRFQEGNPEVGIDYIAVSSAELNRAIRGGAAFDLALSSAMDLQFTLAND HCCCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHCCCCEEEEECCC GYAQSYASSVTAGLPDWARWNDQLFAFTAEPAVIVINEARFEGLPLPRTRAELVTLLRDN CHHHHHHHHHHCCCCCHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC ADRFAGRLGTYDLRASGLGYLFATQEARSSDAYWRLTEVMGRLDAQLYCCSSQMIDAVAS HHHHHHCCCCCEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCHHEEEHHHHHHHHHHC GELALAYNVLGSYAAQRLNTDAGLAVLPFEDFANVMLRTALIPATATEVDAAGAMLDALL CCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH REGMGEGSAAPVLPPLQSRDDAEGSPFGPIRLGPALMVYLDRLNRESFLAAWDAAMEQ HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCC >Mature Secondary Structure MCAADIACGLRRAFGAVLLAAFGALLLAPLLAAAVNAQDYEIEDRREYPGTGAALLRVIS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH TADLDVFEPFLLRFQEGNPEVGIDYIAVSSAELNRAIRGGAAFDLALSSAMDLQFTLAND HCCCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHCCCCEEEEECCC GYAQSYASSVTAGLPDWARWNDQLFAFTAEPAVIVINEARFEGLPLPRTRAELVTLLRDN CHHHHHHHHHHCCCCCHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC ADRFAGRLGTYDLRASGLGYLFATQEARSSDAYWRLTEVMGRLDAQLYCCSSQMIDAVAS HHHHHHCCCCCEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCHHEEEHHHHHHHHHHC GELALAYNVLGSYAAQRLNTDAGLAVLPFEDFANVMLRTALIPATATEVDAAGAMLDALL CCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH REGMGEGSAAPVLPPLQSRDDAEGSPFGPIRLGPALMVYLDRLNRESFLAAWDAAMEQ HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA