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The map label for this gene is qseB [H]

Identifier: 89055982

GI number: 89055982

Start: 3544724

End: 3545383

Strand: Direct

Name: qseB [H]

Synonym: Jann_3491

Alternate gene names: 89055982

Gene position: 3544724-3545383 (Clockwise)

Preceding gene: 89055981

Following gene: 89055983

Centisome position: 82.09

GC content: 65.76

Gene sequence:

>660_bases
ATGCGATTTCTGTTGGTCGAAGATAATGCGGAACTAGCGGATTCAGTCGTGCAGCGGCTGGGGCTGGACGGCCACGCCGT
CGACCACGCAGGCACGCTGGCCGAGGCGGAGGATTGCCTGGCCGTCGCCGAATACGACCTGATCCTGCTGGACGTGATGC
TGCCCGACGGCGACGGGCGCGACAGGCTGGCCACCTGGCGGGGGCGCTTGGAGACGCCGGTGATCGTGCTGACCGCGCGC
AGCCAGATCAGTGACCGGGTGGGCGCGCTGGATCAGGGCGCCGATGACTACCTGACCAAGCCGTTTGATTTCAGCGAGTT
GGAGGCGCGGTGCCGCGCGGTCCTGCGCCGTCGCGGCGGCGCTGCGAAGAATGAGGTTACTCTTGGCGACGCAGTCTTTG
ACCCCACCGCAGGGACCCTGCGCGCGGGCGAACAGGTCGTGGACCTGCGCAACCGGGAGATCCGGCTGTTGGAGGTCTTC
GCGCGCAACCCCGGCCATATCCTGTCCAAATCCCAGCTGATGGATCGGCTGTTTTCCCATGACGCAGACGTCACCGAGAA
TGCGATTGAGGTCTATGTCGGGCGTTTGCGGCGCAAGCTGGACGAGGTCGGCGTGAAGATCGAAACGGTGCGCGGGGCGG
GCTACCGGATCAGCCGATGA

Upstream 100 bases:

>100_bases
GCTGATCCGCTAGGGCCACATCTGCGACGGCATTGCCAAAGCTTGCAACGCCACTTGCGCCCCGGTTTCGACCCCGGCAC
GTTACGTGGCGGAGGAGCCC

Downstream 100 bases:

>100_bases
GCGTTCAACCGGGCTGGCCCATCGCGCGGAAACTAACGATGTTTCTGGCAGGGATCGTGGCGCTTCTGGCGTTGGTCAGC
TGGGGGATGGTGACGTCGTT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRFLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGRDRLATWRGRLETPVIVLTAR
SQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRGGAAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVF
ARNPGHILSKSQLMDRLFSHDADVTENAIEVYVGRLRRKLDEVGVKIETVRGAGYRISR

Sequences:

>Translated_219_residues
MRFLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGRDRLATWRGRLETPVIVLTAR
SQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRGGAAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVF
ARNPGHILSKSQLMDRLFSHDADVTENAIEVYVGRLRRKLDEVGVKIETVRGAGYRISR
>Mature_219_residues
MRFLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGRDRLATWRGRLETPVIVLTAR
SQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRGGAAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVF
ARNPGHILSKSQLMDRLFSHDADVTENAIEVYVGRLRRKLDEVGVKIETVRGAGYRISR

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=39.4495412844037, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=38.3561643835616, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=37.219730941704, Blast_Score=128, Evalue=2e-31,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=36.8181818181818, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1790552, Length=219, Percent_Identity=35.6164383561644, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=38.3561643835616, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=36.7713004484305, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=33.4782608695652, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=32.4324324324324, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=30.6666666666667, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=35.2422907488987, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=30.3571428571429, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=25.8620689655172, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24254; Mature: 24254

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGR
CEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCC
DRLATWRGRLETPVIVLTARSQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRGG
CHHHHHCCCCCCCEEEEECCHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCC
AAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVFARNPGHILSKSQLMDRLFSH
CCCCCEEECCCEECCCCCHHHCCHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
DADVTENAIEVYVGRLRRKLDEVGVKIETVRGAGYRISR
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEECCC
>Mature Secondary Structure
MRFLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGR
CEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCC
DRLATWRGRLETPVIVLTARSQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRGG
CHHHHHCCCCCCCEEEEECCHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCC
AAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVFARNPGHILSKSQLMDRLFSH
CCCCCEEECCCEECCCCCHHHCCHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
DADVTENAIEVYVGRLRRKLDEVGVKIETVRGAGYRISR
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]