| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055916
Identifier: 89055916
GI number: 89055916
Start: 3472638
End: 3473435
Strand: Direct
Name: 89055916
Synonym: Jann_3425
Alternate gene names: NA
Gene position: 3472638-3473435 (Clockwise)
Preceding gene: 89055915
Following gene: 89055917
Centisome position: 80.42
GC content: 64.16
Gene sequence:
>798_bases ATGCCTCGGGCCTTCCGCTTCTGGACGGGTCGGGCGCGGCCATCGCGGCCCCCGATTGTCTGGCCTGTCACCTCACCGTT GCATTTCTGTCGCCCACACCGCCCTTTGCGACAGCGCCCTCCCATCTGCTTCGCCCCGCGAAGCCTGCCGTCACACCCGG TCTCTCCCCCCGTGTCGTCCATCTGGGCGCTCAAGCCCGTGCGCCCCCGCGCGCGGCCTGAGCCTCACCAGATCCAATCG ACACAGACAAGAGAGACCAGCATGACCTTCAAAACCACGCTCCTCGCCGCCGCCTTCGCGGTGTTCCCCGCCCTTGCATC CGCCCATATGGTGATCGAGGACGCCTACGCCCGCGCCTCCAGCCCCGTGGCCCAATCCGGCGCGGCCTTCATGACCATCT TCAACCACAACGATTTCGACGACCGCCTGATCGGCGTGACCTCCACCGCCGCCGAGCGGTTGGAACTGCACACCCACATC ATGGAAGAGAACGGCGTCATGCGCATGGTGGAGGTTGAAGAGGGCTTCCCCATTGCCGCCGGCGAGACCATCGCATTGGA GCGCGGCGGGATGCATGTTATGCTTCTGGGCCTGACCGAACCCCTGGTCCAGGGTGAAGAGATCGAGATCACCTTCACAT TTGAAACCTCTGATCCGGTCACGCACATTATCACCATCGACAACGAACGTCAGCCCGCAGAGGGCGGTCATGGCGACCAC AGCGGCCACGGTGATCACAGCGGCCACGGTGATATGGACACCGAAGACGATCATTCCGGCCACAGCACCGACGGCTGA
Upstream 100 bases:
>100_bases CTCAGCCTGCTCCTCAGCGGGCTCACCTCCGTCGTCGCGGAAACGCGCATGGCGGCAGCGGGCGGCTATTGCGGCACCGG CGCGCCGGAGCTTTTGCTCG
Downstream 100 bases:
>100_bases CAACTGCAAACTCCGGTCCCGCCCCTCGCTTTTGGCGGGACCGACCCAAACGGACGCTCCAAGGCCCCGGTTCTCACGCG GCAGCCTGTCTGAGCCGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MPRAFRFWTGRARPSRPPIVWPVTSPLHFCRPHRPLRQRPPICFAPRSLPSHPVSPPVSSIWALKPVRPRARPEPHQIQS TQTRETSMTFKTTLLAAAFAVFPALASAHMVIEDAYARASSPVAQSGAAFMTIFNHNDFDDRLIGVTSTAAERLELHTHI MEENGVMRMVEVEEGFPIAAGETIALERGGMHVMLLGLTEPLVQGEEIEITFTFETSDPVTHIITIDNERQPAEGGHGDH SGHGDHSGHGDMDTEDDHSGHSTDG
Sequences:
>Translated_265_residues MPRAFRFWTGRARPSRPPIVWPVTSPLHFCRPHRPLRQRPPICFAPRSLPSHPVSPPVSSIWALKPVRPRARPEPHQIQS TQTRETSMTFKTTLLAAAFAVFPALASAHMVIEDAYARASSPVAQSGAAFMTIFNHNDFDDRLIGVTSTAAERLELHTHI MEENGVMRMVEVEEGFPIAAGETIALERGGMHVMLLGLTEPLVQGEEIEITFTFETSDPVTHIITIDNERQPAEGGHGDH SGHGDHSGHGDMDTEDDHSGHSTDG >Mature_264_residues PRAFRFWTGRARPSRPPIVWPVTSPLHFCRPHRPLRQRPPICFAPRSLPSHPVSPPVSSIWALKPVRPRARPEPHQIQST QTRETSMTFKTTLLAAAFAVFPALASAHMVIEDAYARASSPVAQSGAAFMTIFNHNDFDDRLIGVTSTAAERLELHTHIM EENGVMRMVEVEEGFPIAAGETIALERGGMHVMLLGLTEPLVQGEEIEITFTFETSDPVTHIITIDNERQPAEGGHGDHS GHGDHSGHGDMDTEDDHSGHSTDG
Specific function: Unknown
COG id: COG2847
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007410 [H]
Pfam domain/function: PF04314 DUF461 [H]
EC number: NA
Molecular weight: Translated: 29192; Mature: 29061
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRAFRFWTGRARPSRPPIVWPVTSPLHFCRPHRPLRQRPPICFAPRSLPSHPVSPPVSS CCCCEEEECCCCCCCCCCEEEECCCCHHHHCCCCCHHHCCCEEECCCCCCCCCCCCCHHH IWALKPVRPRARPEPHQIQSTQTRETSMTFKTTLLAAAFAVFPALASAHMVIEDAYARAS HEEECCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPVAQSGAAFMTIFNHNDFDDRLIGVTSTAAERLELHTHIMEENGVMRMVEVEEGFPIAA CCCHHCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC GETIALERGGMHVMLLGLTEPLVQGEEIEITFTFETSDPVTHIITIDNERQPAEGGHGDH CCEEEEECCCEEEEEEECCCHHHCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCC SGHGDHSGHGDMDTEDDHSGHSTDG CCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRAFRFWTGRARPSRPPIVWPVTSPLHFCRPHRPLRQRPPICFAPRSLPSHPVSPPVSS CCCEEEECCCCCCCCCCEEEECCCCHHHHCCCCCHHHCCCEEECCCCCCCCCCCCCHHH IWALKPVRPRARPEPHQIQSTQTRETSMTFKTTLLAAAFAVFPALASAHMVIEDAYARAS HEEECCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPVAQSGAAFMTIFNHNDFDDRLIGVTSTAAERLELHTHIMEENGVMRMVEVEEGFPIAA CCCHHCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC GETIALERGGMHVMLLGLTEPLVQGEEIEITFTFETSDPVTHIITIDNERQPAEGGHGDH CCEEEEECCCEEEEEEECCCHHHCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCC SGHGDHSGHGDMDTEDDHSGHSTDG CCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA