| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is gsiB [H]
Identifier: 89055785
GI number: 89055785
Start: 3348360
End: 3350081
Strand: Direct
Name: gsiB [H]
Synonym: Jann_3294
Alternate gene names: 89055785
Gene position: 3348360-3350081 (Clockwise)
Preceding gene: 89055784
Following gene: 89055786
Centisome position: 77.54
GC content: 63.24
Gene sequence:
>1722_bases ATGAAACGTACATCCATTCTTCTGGGGTGCGCCGCCGCGATGGCCTGCGCCCCCATGGCCGCGCTGGCCGACGGGCATCT GTCCCGCGGCGGTTCCGGCCACCTCAACATTATCTATTGGCAAGCGCCCTCAACGCTGAACCCGTATCTGTCGGGCGGCA CGAAAGAGGTCGAATCCGCCTCGCTGATCCTGGAAAGCCTGGGTCGCTTTGACGACACCGGCGAGCTGGTCCCATGGCTG GCCGCCGAGATTCCGACCGTTGAGAACGGCGGCATCTCCGAGGATCTGACGCAGATCACCTGGACGCTGCAGGAAGGCAT CCTGTGGTCCGATGGCACGCCCCTGACGGCGGCGGACGCCGTGTTCACGTGGGAGTATTGTACCGATTCCGAGAGTGGCT GCGCCCAGGCGTCCTACTTTGACGGCGTCGAAGCGGTTGAGGCTGTGGACGACACGACGATCCAGATCACGTTCAACGCC CCCACACCATTCCCCTACACCGCGCTGGTCGGCTCCGAGAGCCCAATCATCCAGGCCGCACAATTTGCCGATTGCGTCGG CGCCCGCGCGCCTGAATGCACCGAGGCCAATTTCGGCCCCATCGGCACCGGTCCCTTCGTCGTCACGGACTTCCGTCCCA ACGACGTGATCGAGCTTGTGGCCAACGACAATTACCGTGTGCCCGAGCAGCCCCACTTCGCGTCCGTGACCTTCAAAGGC GGCGGCGATGCAACGGCGGCGGCGCGGTCCGTGCTGGAAACGGGCGAGTTTGACTACGCCTGGAACCTTCAGATCGACCC GACAATCCTGGCGCAAATGGAAGCGCAGGGGAACGGCACGGTCGTGACCGCCTTCGGCACGTCCGTTGAGCGTCTGCACC TGAACCAGACCAACCCCGATGCAGCGCTTGGCGACATGCGCTCCACCGTGGAAGGCGGGCCGCACCCGTTCCTGACCGAT CCGATCGTGGGTCAGGCGATGTCCATGGCCATCGACCGCGCGCTGATCGTGGAAATCGGCTACGGGGCAGGCGGTCAGCC CACCTGTAACGTCCTTCCCGCGCCCGAGGCCTATGCCTCCACCGCCAACGATGGCTGCCTTGTGCAGGACATCGCCGGTG CCAATGCGCTGCTGGATGAAGCGGGCCACGTCGACACCGACGGCGACGGCATCCGCGAATACAACGGTGTTCCGATGACG GTTCTTTATCAGACCTCGACCAACGCCGTCCGTCAGGACACCCAAGCGCTGGTGAAGCAATGGTGGGAAGAAATCGGCAT CGGGTCCGAGCTTCGCAACATCGACGCATCGGTCTTCTTCGGTGGTGATCCGGCATCGCCCGACACGTTCCAGAAGTTCT ATGCCGACGTCGAAATGTACACCAACAACTTCTCGGGCGTTGACCCGCAGGCGTATATGGCCAACTGGCTCTGCTCGGAC ATTCCTGGTCCGGACACCCAATGGCAGGGTGCGAACATCCAGCGCTTCTGTTCCGAGGACTATGACGCCCTCGTGGCGGA AATGGCCGGTACCGCAGACCTGGCCGAGCGGGGCCGTCTGGCGATGGCAATGAACGACATGATCATGCAGTCGTATTCCA TCATCCCGCTGGTCCACCGTGGCGGCGTGTCGGCCCATGCCAACACTCTGGGCGGTGTGCGGATGTCCGATTGGGACACC GAATTGTGGAACATCGCCGAATGGCACCGCATCCCTGAGTGA
Upstream 100 bases:
>100_bases CCTGCCACCTGCACAGTTAAAAGCAACAAGATCGCCCCAAGGCGGCACGAGCAAACTGACAAAGACCGACCACGACCAAC AAGGAGTGAGAGACACAGTA
Downstream 100 bases:
>100_bases TGTGACCTGACTTCGGCCCGCCCCCCTTTGCCGGGGGGCGGGCCTTCCCCAGTTCGTGCGCAAGGTCACTTCGTTCCCAT GCCGTCCCAACCCCTCCTCG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MKRTSILLGCAAAMACAPMAALADGHLSRGGSGHLNIIYWQAPSTLNPYLSGGTKEVESASLILESLGRFDDTGELVPWL AAEIPTVENGGISEDLTQITWTLQEGILWSDGTPLTAADAVFTWEYCTDSESGCAQASYFDGVEAVEAVDDTTIQITFNA PTPFPYTALVGSESPIIQAAQFADCVGARAPECTEANFGPIGTGPFVVTDFRPNDVIELVANDNYRVPEQPHFASVTFKG GGDATAAARSVLETGEFDYAWNLQIDPTILAQMEAQGNGTVVTAFGTSVERLHLNQTNPDAALGDMRSTVEGGPHPFLTD PIVGQAMSMAIDRALIVEIGYGAGGQPTCNVLPAPEAYASTANDGCLVQDIAGANALLDEAGHVDTDGDGIREYNGVPMT VLYQTSTNAVRQDTQALVKQWWEEIGIGSELRNIDASVFFGGDPASPDTFQKFYADVEMYTNNFSGVDPQAYMANWLCSD IPGPDTQWQGANIQRFCSEDYDALVAEMAGTADLAERGRLAMAMNDMIMQSYSIIPLVHRGGVSAHANTLGGVRMSDWDT ELWNIAEWHRIPE
Sequences:
>Translated_573_residues MKRTSILLGCAAAMACAPMAALADGHLSRGGSGHLNIIYWQAPSTLNPYLSGGTKEVESASLILESLGRFDDTGELVPWL AAEIPTVENGGISEDLTQITWTLQEGILWSDGTPLTAADAVFTWEYCTDSESGCAQASYFDGVEAVEAVDDTTIQITFNA PTPFPYTALVGSESPIIQAAQFADCVGARAPECTEANFGPIGTGPFVVTDFRPNDVIELVANDNYRVPEQPHFASVTFKG GGDATAAARSVLETGEFDYAWNLQIDPTILAQMEAQGNGTVVTAFGTSVERLHLNQTNPDAALGDMRSTVEGGPHPFLTD PIVGQAMSMAIDRALIVEIGYGAGGQPTCNVLPAPEAYASTANDGCLVQDIAGANALLDEAGHVDTDGDGIREYNGVPMT VLYQTSTNAVRQDTQALVKQWWEEIGIGSELRNIDASVFFGGDPASPDTFQKFYADVEMYTNNFSGVDPQAYMANWLCSD IPGPDTQWQGANIQRFCSEDYDALVAEMAGTADLAERGRLAMAMNDMIMQSYSIIPLVHRGGVSAHANTLGGVRMSDWDT ELWNIAEWHRIPE >Mature_573_residues MKRTSILLGCAAAMACAPMAALADGHLSRGGSGHLNIIYWQAPSTLNPYLSGGTKEVESASLILESLGRFDDTGELVPWL AAEIPTVENGGISEDLTQITWTLQEGILWSDGTPLTAADAVFTWEYCTDSESGCAQASYFDGVEAVEAVDDTTIQITFNA PTPFPYTALVGSESPIIQAAQFADCVGARAPECTEANFGPIGTGPFVVTDFRPNDVIELVANDNYRVPEQPHFASVTFKG GGDATAAARSVLETGEFDYAWNLQIDPTILAQMEAQGNGTVVTAFGTSVERLHLNQTNPDAALGDMRSTVEGGPHPFLTD PIVGQAMSMAIDRALIVEIGYGAGGQPTCNVLPAPEAYASTANDGCLVQDIAGANALLDEAGHVDTDGDGIREYNGVPMT VLYQTSTNAVRQDTQALVKQWWEEIGIGSELRNIDASVFFGGDPASPDTFQKFYADVEMYTNNFSGVDPQAYMANWLCSD IPGPDTQWQGANIQRFCSEDYDALVAEMAGTADLAERGRLAMAMNDMIMQSYSIIPLVHRGGVSAHANTLGGVRMSDWDT ELWNIAEWHRIPE
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=513, Percent_Identity=24.7563352826511, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1789887, Length=400, Percent_Identity=24.75, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1789966, Length=513, Percent_Identity=23.7816764132554, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787762, Length=220, Percent_Identity=27.7272727272727, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 61333; Mature: 61333
Theoretical pI: Translated: 3.87; Mature: 3.87
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTSILLGCAAAMACAPMAALADGHLSRGGSGHLNIIYWQAPSTLNPYLSGGTKEVESA CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCHHHHHH SLILESLGRFDDTGELVPWLAAEIPTVENGGISEDLTQITWTLQEGILWSDGTPLTAADA HHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCEECCE VFTWEYCTDSESGCAQASYFDGVEAVEAVDDTTIQITFNAPTPFPYTALVGSESPIIQAA EEEEEECCCCCCCCCCHHHHCCHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCHHHHH QFADCVGARAPECTEANFGPIGTGPFVVTDFRPNDVIELVANDNYRVPEQPHFASVTFKG HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC GGDATAAARSVLETGEFDYAWNLQIDPTILAQMEAQGNGTVVTAFGTSVERLHLNQTNPD CCCHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC AALGDMRSTVEGGPHPFLTDPIVGQAMSMAIDRALIVEIGYGAGGQPTCNVLPAPEAYAS HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCHHHHC TANDGCLVQDIAGANALLDEAGHVDTDGDGIREYNGVPMTVLYQTSTNAVRQDTQALVKQ CCCCCEEEEECCCCHHHHHCCCCCCCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHHHH WWEEIGIGSELRNIDASVFFGGDPASPDTFQKFYADVEMYTNNFSGVDPQAYMANWLCSD HHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHC IPGPDTQWQGANIQRFCSEDYDALVAEMAGTADLAERGRLAMAMNDMIMQSYSIIPLVHR CCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHCCCEEEHHHHHHHHCCCEEEEEEC GGVSAHANTLGGVRMSDWDTELWNIAEWHRIPE CCCCCCCCCCCCCEECCCCCHHHCCHHHHCCCC >Mature Secondary Structure MKRTSILLGCAAAMACAPMAALADGHLSRGGSGHLNIIYWQAPSTLNPYLSGGTKEVESA CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCHHHHHH SLILESLGRFDDTGELVPWLAAEIPTVENGGISEDLTQITWTLQEGILWSDGTPLTAADA HHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCEECCE VFTWEYCTDSESGCAQASYFDGVEAVEAVDDTTIQITFNAPTPFPYTALVGSESPIIQAA EEEEEECCCCCCCCCCHHHHCCHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCHHHHH QFADCVGARAPECTEANFGPIGTGPFVVTDFRPNDVIELVANDNYRVPEQPHFASVTFKG HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC GGDATAAARSVLETGEFDYAWNLQIDPTILAQMEAQGNGTVVTAFGTSVERLHLNQTNPD CCCHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC AALGDMRSTVEGGPHPFLTDPIVGQAMSMAIDRALIVEIGYGAGGQPTCNVLPAPEAYAS HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCHHHHC TANDGCLVQDIAGANALLDEAGHVDTDGDGIREYNGVPMTVLYQTSTNAVRQDTQALVKQ CCCCCEEEEECCCCHHHHHCCCCCCCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHHHH WWEEIGIGSELRNIDASVFFGGDPASPDTFQKFYADVEMYTNNFSGVDPQAYMANWLCSD HHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHC IPGPDTQWQGANIQRFCSEDYDALVAEMAGTADLAERGRLAMAMNDMIMQSYSIIPLVHR CCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHCCCEEEHHHHHHHHCCCEEEEEEC GGVSAHANTLGGVRMSDWDTELWNIAEWHRIPE CCCCCCCCCCCCCEECCCCCHHHCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA