| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055775
Identifier: 89055775
GI number: 89055775
Start: 3336229
End: 3337512
Strand: Direct
Name: 89055775
Synonym: Jann_3284
Alternate gene names: NA
Gene position: 3336229-3337512 (Clockwise)
Preceding gene: 89055774
Following gene: 89055778
Centisome position: 77.26
GC content: 62.93
Gene sequence:
>1284_bases ATGCCGTTGAAAGACCACCCGCTCCGCTATCAGCTGGCCAATGAGCTGCATGCCCGCCCCTTTCCGACATTGGAATGCCC GGGACAGGCGGTCTATCTGGCGATCAAGCAACCCAAGGAATCGGCCAAACGCGACCGGGCTCTGGACCGCGCGCACCTGC TGGCCCTGCTGGACCGGTTCGGCGCACAGCATCCAAGCCCGGACGCCACGCATTACTTTGCCAAACTGGGCCTGTTTCAC CTGAAATGGGAAAGCCATACGGAATTCGTGACCTATACCGCGTTCATGGAAAACGGTGTGGACCGCCCGTTTGACCCTGC CGCCTGGGATGTGTTTCCCGACGATTGGCTGGAAGAGGCGCCGGGCGTGCGCATCACCTCGGCCCATATCCGGTTTGCCA ACGCGCCCCGGGACGAGGATGCCATCACCGATCAGATCAAGGAATGGTTCGTGCCCGAAAGCCTCGCCGCGTCCCGGGTT CTTGATGATACGGCGATCATCGCAGGCGATTTTCGCATCGACACTGCAGGTCACATGCGGTTCGCGGTGTTCACCAACCC CGATACCGGCAATCGCCGCATCGGGCGCATTGTCCAGCGGATCTGCGAGATTGAGACCTATAAGGCCATGTCGATGTTGG GCCTGCCCCGCGCCCGCACCATCTCGCACCGGATGGGAGAGATTGACGCCACCCTCTCGGCCCTGGTCAGCGACCTGTCC GGCGATCTGACCAAGCCGGATGAGACGCTGTCCGCCCTGCTGACCGCCGCGGCGGAGCTGGAGCAGTTGCAGACCGAAAG CGCCTTCCGCTTTGGCGCGACCGGGGCTTATGAGGCGCTGGTCAACCAACGGATCGAAGTGCTGCGGGAGGATCGCTTCC GGGGCCGCCAGACCTTCGGCGAATTCATGATGCGCCGTTTTGATCCGGCCATGCGGACCGTGAAGGCGACGGAGCGGCGG TTGCAAAGCATGACCGACCGCGCGATCCGGGCGGGCGATCTGTTGCGGACCCGCGTGGACGTCGACCGCTCGGCCCAGAA CCAGCAATTATTGGAATCGATGGACGCACGATCCGACTTGCAATTGAGGTTGCAAAAGACCGTTGAGGGTCTGTCGATCG TGGCGATCAGCTATTACGCCGTGTCTCTTGCGGGCTATGTTCTGGCCCCCCTGGCAGATCCCCTGGGGGTGGACGAGGCG ATCTTGACGGCCATGGCTGTGCTGCCCGTGGTCACCGTCGTGTGGATGGCCCTGCGCGCGATCCGGCGGTCCATCGAGAA GTAG
Upstream 100 bases:
>100_bases TGCACCCCGCCAACCCTCTAAAAACATTGGTTTTTTTGGGTTTACACGCGCGCAAATGCCGCTATCTGGGATATATGTAT CTTTTGGGACGCCCCGCGCC
Downstream 100 bases:
>100_bases GGCCAGGGACAGGTAGGAATTTCGACGATTTCATCGCCAATCAGCCGGTGCGTTTGTTCCGTCTCCAAACGCTCCTGCGG CGCGTGGCTCTCCGGGGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MPLKDHPLRYQLANELHARPFPTLECPGQAVYLAIKQPKESAKRDRALDRAHLLALLDRFGAQHPSPDATHYFAKLGLFH LKWESHTEFVTYTAFMENGVDRPFDPAAWDVFPDDWLEEAPGVRITSAHIRFANAPRDEDAITDQIKEWFVPESLAASRV LDDTAIIAGDFRIDTAGHMRFAVFTNPDTGNRRIGRIVQRICEIETYKAMSMLGLPRARTISHRMGEIDATLSALVSDLS GDLTKPDETLSALLTAAAELEQLQTESAFRFGATGAYEALVNQRIEVLREDRFRGRQTFGEFMMRRFDPAMRTVKATERR LQSMTDRAIRAGDLLRTRVDVDRSAQNQQLLESMDARSDLQLRLQKTVEGLSIVAISYYAVSLAGYVLAPLADPLGVDEA ILTAMAVLPVVTVVWMALRAIRRSIEK
Sequences:
>Translated_427_residues MPLKDHPLRYQLANELHARPFPTLECPGQAVYLAIKQPKESAKRDRALDRAHLLALLDRFGAQHPSPDATHYFAKLGLFH LKWESHTEFVTYTAFMENGVDRPFDPAAWDVFPDDWLEEAPGVRITSAHIRFANAPRDEDAITDQIKEWFVPESLAASRV LDDTAIIAGDFRIDTAGHMRFAVFTNPDTGNRRIGRIVQRICEIETYKAMSMLGLPRARTISHRMGEIDATLSALVSDLS GDLTKPDETLSALLTAAAELEQLQTESAFRFGATGAYEALVNQRIEVLREDRFRGRQTFGEFMMRRFDPAMRTVKATERR LQSMTDRAIRAGDLLRTRVDVDRSAQNQQLLESMDARSDLQLRLQKTVEGLSIVAISYYAVSLAGYVLAPLADPLGVDEA ILTAMAVLPVVTVVWMALRAIRRSIEK >Mature_426_residues PLKDHPLRYQLANELHARPFPTLECPGQAVYLAIKQPKESAKRDRALDRAHLLALLDRFGAQHPSPDATHYFAKLGLFHL KWESHTEFVTYTAFMENGVDRPFDPAAWDVFPDDWLEEAPGVRITSAHIRFANAPRDEDAITDQIKEWFVPESLAASRVL DDTAIIAGDFRIDTAGHMRFAVFTNPDTGNRRIGRIVQRICEIETYKAMSMLGLPRARTISHRMGEIDATLSALVSDLSG DLTKPDETLSALLTAAAELEQLQTESAFRFGATGAYEALVNQRIEVLREDRFRGRQTFGEFMMRRFDPAMRTVKATERRL QSMTDRAIRAGDLLRTRVDVDRSAQNQQLLESMDARSDLQLRLQKTVEGLSIVAISYYAVSLAGYVLAPLADPLGVDEAI LTAMAVLPVVTVVWMALRAIRRSIEK
Specific function: Unknown
COG id: COG4949
COG function: function code S; Uncharacterized membrane-anchored protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48023; Mature: 47892
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLKDHPLRYQLANELHARPFPTLECPGQAVYLAIKQPKESAKRDRALDRAHLLALLDRF CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH GAQHPSPDATHYFAKLGLFHLKWESHTEFVTYTAFMENGVDRPFDPAAWDVFPDDWLEEA CCCCCCCCHHHHHHHHHHHEEEECCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHHHHC PGVRITSAHIRFANAPRDEDAITDQIKEWFVPESLAASRVLDDTAIIAGDFRIDTAGHMR CCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCEEEECCCCEE FAVFTNPDTGNRRIGRIVQRICEIETYKAMSMLGLPRARTISHRMGEIDATLSALVSDLS EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC GDLTKPDETLSALLTAAAELEQLQTESAFRFGATGAYEALVNQRIEVLREDRFRGRQTFG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EFMMRRFDPAMRTVKATERRLQSMTDRAIRAGDLLRTRVDVDRSAQNQQLLESMDARSDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHH QLRLQKTVEGLSIVAISYYAVSLAGYVLAPLADPLGVDEAILTAMAVLPVVTVVWMALRA HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IRRSIEK HHHHHCC >Mature Secondary Structure PLKDHPLRYQLANELHARPFPTLECPGQAVYLAIKQPKESAKRDRALDRAHLLALLDRF CCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH GAQHPSPDATHYFAKLGLFHLKWESHTEFVTYTAFMENGVDRPFDPAAWDVFPDDWLEEA CCCCCCCCHHHHHHHHHHHEEEECCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHHHHC PGVRITSAHIRFANAPRDEDAITDQIKEWFVPESLAASRVLDDTAIIAGDFRIDTAGHMR CCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCEEEECCCCEE FAVFTNPDTGNRRIGRIVQRICEIETYKAMSMLGLPRARTISHRMGEIDATLSALVSDLS EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC GDLTKPDETLSALLTAAAELEQLQTESAFRFGATGAYEALVNQRIEVLREDRFRGRQTFG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EFMMRRFDPAMRTVKATERRLQSMTDRAIRAGDLLRTRVDVDRSAQNQQLLESMDARSDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHH QLRLQKTVEGLSIVAISYYAVSLAGYVLAPLADPLGVDEAILTAMAVLPVVTVVWMALRA HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IRRSIEK HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA