Click here to switch to the map view.

The map label for this gene is ytcJ [H]

Identifier: 89055741

GI number: 89055741

Start: 3299943

End: 3301571

Strand: Direct

Name: ytcJ [H]

Synonym: Jann_3250

Alternate gene names: 89055741

Gene position: 3299943-3301571 (Clockwise)

Preceding gene: 89055740

Following gene: 89055742

Centisome position: 76.42

GC content: 64.58

Gene sequence:

>1629_bases
ATGTCAGAGATCACTGTTTTCAAAGCGAAAACCATCGTCACAATGGATCCAAACCAACCCACGGCGACCCATGTCGCGGT
GCGCGACGGCCATATTCTGTCCGTTGGCGGGCCCGATTGCGCCGATGCCTGGGGACCCGTGGCACATGACGACGGCCTGT
CCCACGCGACGCTGATGCCCGGCTTCGTGGAGGGGCACGCCCACATGATGGCGGGCGCGATCTGGGATTACACCTACGCC
GGCTTTCATGACCGGATCGACCCCGACGGCACCCTGTGGGAGGGGGTGTCCAGCACGGAGGCCGTCGTCGCGCGATTTGC
GGAGGAAGAGGCCAAATTGCCCCCAGATGCGCCGCTCATTGGTTGGGGCTTCGACCCGATCTTTCTGCCCGGTGACCGCC
TGTCGCGCGCCCATCTGGACCGCGTCAGCGCGGATCGCCCCATCGCGATCATCTTCTCCAACTTCCACCTGATGTGTGTG
AACTCCGCCGCGCTGGCGCTGGTGGGCTTTGACGCGGGCACCAATGTCGAAGGCGTCGTGAAGGACCCGGACGGCCACCC
GACCGGCGAGCTTCAGGAAATGGCCGCGATGTTTCCGATCATGCGTCGCCTCGGCATCGACTTCCGCAACCTGTCGCAGC
GTGACAGCTCCATCCGATCCTATGCCAAGGTGGCTGTGAGGGCGGGTGTGACGACGGTAACGGACCTGTTCTCCGAGTTA
CAGGAGGAGGATCTGGCCCTGATGCAGGCCATCACGGGAGAGGCCGACTTCCCCCTCCGCATCGTGCCAGCCCTGGGGGC
GGTGGGTGGCACCCCGGCGGAGATCGCCGACCGCGCCATTGCGATGCGCGCAAAGTCTACCGACAAGCTGCGTTTGGGCG
CGGTGAAGCTGATGACCGACGGCTCCATCCAGGGCTGGACCGCACGGGTGAAGTGGCCGGGCTACGTCGGCGGGCAGCCC
AACGGGATCTGGAACCTCGCCCCTGACCAGATCCGCGATTTATGCGCCGAGATGCACGCGCGCGGCGTTCAGATGCATAT
CCACGTGAACGGCGATGAGGCGTCGGAGGTCGTCATCGACGCGCTGGAGGCGGCGATGCAGGTCGCACCATGGCCCGGCC
ATCGCCATGTGCTGCAACACGGGCAGTTGATGGGTGCGGATCAGTTCCACCGCTGTGCGGAGCTTGGGTTGTGCGTGAAC
CTGTTCGCCAATCATTTGTGGTACTTTGGCGATCAGCATGTGGCCCTGACCGTCGGCTGGGACCGGGCACACCGCATGGA
CGGCGCGCGCGCGGCGCTGGATGCGGGCGTGAAAATCGCGGTCCATTCCGATGCGCCAGTCACGCCGATGGGCCCGTTGT
TCACTGCCTGGTGCGCGGTCAACCGGCGCACGATGTCAGGCGAGGTTCTGGGGAAGGCGCAGAAGATCACCGTGGATGAG
GCTCTGCACGCCATCACTCTGGGCGCGGCCTACACGCTGCGCATGGACGATGAGATTGGATCAATTGAGACCGGCAAACG
CGCCGATTTCGCGGTGTTGGGTGCAGATCCAAGCGCCGTTGACCCCATGGATCTGAAAGATGTCCCGGTTCTGGGCACCG
TTTCGGGCGGGCGGGCGCATCTGCTATGA

Upstream 100 bases:

>100_bases
ACTTCGTAGAGGATCTCTGTGCGCGGCCGCCGCTTCCCTAAAGCGCTTGCCTTTGGCTGCATCTGCGATACCCCTTGGAG
CGCGCGTCAGGAGGGCGGAC

Downstream 100 bases:

>100_bases
TGCCCCTGCCGTTGACAGTGGTGGCGGGATATTTGGGTGCCGGAAAGACCACGTTTATCAATCGCTTGCTGGCAGGAGAC
CACAGGCTGCGCCTGATGGT

Product: amidohydrolase 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 541

Protein sequence:

>542_residues
MSEITVFKAKTIVTMDPNQPTATHVAVRDGHILSVGGPDCADAWGPVAHDDGLSHATLMPGFVEGHAHMMAGAIWDYTYA
GFHDRIDPDGTLWEGVSSTEAVVARFAEEEAKLPPDAPLIGWGFDPIFLPGDRLSRAHLDRVSADRPIAIIFSNFHLMCV
NSAALALVGFDAGTNVEGVVKDPDGHPTGELQEMAAMFPIMRRLGIDFRNLSQRDSSIRSYAKVAVRAGVTTVTDLFSEL
QEEDLALMQAITGEADFPLRIVPALGAVGGTPAEIADRAIAMRAKSTDKLRLGAVKLMTDGSIQGWTARVKWPGYVGGQP
NGIWNLAPDQIRDLCAEMHARGVQMHIHVNGDEASEVVIDALEAAMQVAPWPGHRHVLQHGQLMGADQFHRCAELGLCVN
LFANHLWYFGDQHVALTVGWDRAHRMDGARAALDAGVKIAVHSDAPVTPMGPLFTAWCAVNRRTMSGEVLGKAQKITVDE
ALHAITLGAAYTLRMDDEIGSIETGKRADFAVLGADPSAVDPMDLKDVPVLGTVSGGRAHLL

Sequences:

>Translated_542_residues
MSEITVFKAKTIVTMDPNQPTATHVAVRDGHILSVGGPDCADAWGPVAHDDGLSHATLMPGFVEGHAHMMAGAIWDYTYA
GFHDRIDPDGTLWEGVSSTEAVVARFAEEEAKLPPDAPLIGWGFDPIFLPGDRLSRAHLDRVSADRPIAIIFSNFHLMCV
NSAALALVGFDAGTNVEGVVKDPDGHPTGELQEMAAMFPIMRRLGIDFRNLSQRDSSIRSYAKVAVRAGVTTVTDLFSEL
QEEDLALMQAITGEADFPLRIVPALGAVGGTPAEIADRAIAMRAKSTDKLRLGAVKLMTDGSIQGWTARVKWPGYVGGQP
NGIWNLAPDQIRDLCAEMHARGVQMHIHVNGDEASEVVIDALEAAMQVAPWPGHRHVLQHGQLMGADQFHRCAELGLCVN
LFANHLWYFGDQHVALTVGWDRAHRMDGARAALDAGVKIAVHSDAPVTPMGPLFTAWCAVNRRTMSGEVLGKAQKITVDE
ALHAITLGAAYTLRMDDEIGSIETGKRADFAVLGADPSAVDPMDLKDVPVLGTVSGGRAHLL
>Mature_541_residues
SEITVFKAKTIVTMDPNQPTATHVAVRDGHILSVGGPDCADAWGPVAHDDGLSHATLMPGFVEGHAHMMAGAIWDYTYAG
FHDRIDPDGTLWEGVSSTEAVVARFAEEEAKLPPDAPLIGWGFDPIFLPGDRLSRAHLDRVSADRPIAIIFSNFHLMCVN
SAALALVGFDAGTNVEGVVKDPDGHPTGELQEMAAMFPIMRRLGIDFRNLSQRDSSIRSYAKVAVRAGVTTVTDLFSELQ
EEDLALMQAITGEADFPLRIVPALGAVGGTPAEIADRAIAMRAKSTDKLRLGAVKLMTDGSIQGWTARVKWPGYVGGQPN
GIWNLAPDQIRDLCAEMHARGVQMHIHVNGDEASEVVIDALEAAMQVAPWPGHRHVLQHGQLMGADQFHRCAELGLCVNL
FANHLWYFGDQHVALTVGWDRAHRMDGARAALDAGVKIAVHSDAPVTPMGPLFTAWCAVNRRTMSGEVLGKAQKITVDEA
LHAITLGAAYTLRMDDEIGSIETGKRADFAVLGADPSAVDPMDLKDVPVLGTVSGGRAHLL

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 58228; Mature: 58097

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEITVFKAKTIVTMDPNQPTATHVAVRDGHILSVGGPDCADAWGPVAHDDGLSHATLMP
CCCEEEEEEEEEEEECCCCCCEEEEEEECCEEEEECCCCCHHHCCCCCCCCCCCCCEECC
GFVEGHAHMMAGAIWDYTYAGFHDRIDPDGTLWEGVSSTEAVVARFAEEEAKLPPDAPLI
CHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE
GWGFDPIFLPGDRLSRAHLDRVSADRPIAIIFSNFHLMCVNSAALALVGFDAGTNVEGVV
ECCCCCEECCCCHHHHHHHHHCCCCCCEEEEECCEEEEEECCCEEEEEEECCCCCCCEEE
KDPDGHPTGELQEMAAMFPIMRRLGIDFRNLSQRDSSIRSYAKVAVRAGVTTVTDLFSEL
ECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
QEEDLALMQAITGEADFPLRIVPALGAVGGTPAEIADRAIAMRAKSTDKLRLGAVKLMTD
HHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
GSIQGWTARVKWPGYVGGQPNGIWNLAPDQIRDLCAEMHARGVQMHIHVNGDEASEVVID
CCCCCCEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
ALEAAMQVAPWPGHRHVLQHGQLMGADQFHRCAELGLCVNLFANHLWYFGDQHVALTVGW
HHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEC
DRAHRMDGARAALDAGVKIAVHSDAPVTPMGPLFTAWCAVNRRTMSGEVLGKAQKITVDE
CHHHHCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEHHH
ALHAITLGAAYTLRMDDEIGSIETGKRADFAVLGADPSAVDPMDLKDVPVLGTVSGGRAH
HHHHEEECEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCEE
LL
CC
>Mature Secondary Structure 
SEITVFKAKTIVTMDPNQPTATHVAVRDGHILSVGGPDCADAWGPVAHDDGLSHATLMP
CCEEEEEEEEEEEECCCCCCEEEEEEECCEEEEECCCCCHHHCCCCCCCCCCCCCEECC
GFVEGHAHMMAGAIWDYTYAGFHDRIDPDGTLWEGVSSTEAVVARFAEEEAKLPPDAPLI
CHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE
GWGFDPIFLPGDRLSRAHLDRVSADRPIAIIFSNFHLMCVNSAALALVGFDAGTNVEGVV
ECCCCCEECCCCHHHHHHHHHCCCCCCEEEEECCEEEEEECCCEEEEEEECCCCCCCEEE
KDPDGHPTGELQEMAAMFPIMRRLGIDFRNLSQRDSSIRSYAKVAVRAGVTTVTDLFSEL
ECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
QEEDLALMQAITGEADFPLRIVPALGAVGGTPAEIADRAIAMRAKSTDKLRLGAVKLMTD
HHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
GSIQGWTARVKWPGYVGGQPNGIWNLAPDQIRDLCAEMHARGVQMHIHVNGDEASEVVID
CCCCCCEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
ALEAAMQVAPWPGHRHVLQHGQLMGADQFHRCAELGLCVNLFANHLWYFGDQHVALTVGW
HHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEC
DRAHRMDGARAALDAGVKIAVHSDAPVTPMGPLFTAWCAVNRRTMSGEVLGKAQKITVDE
CHHHHCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEHHH
ALHAITLGAAYTLRMDDEIGSIETGKRADFAVLGADPSAVDPMDLKDVPVLGTVSGGRAH
HHHHEEECEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCEE
LL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]