| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055685
Identifier: 89055685
GI number: 89055685
Start: 3235904
End: 3236362
Strand: Direct
Name: 89055685
Synonym: Jann_3194
Alternate gene names: NA
Gene position: 3235904-3236362 (Clockwise)
Preceding gene: 89055684
Following gene: 89055686
Centisome position: 74.94
GC content: 62.31
Gene sequence:
>459_bases ATGGGAGGCTTCTCAATGAAACACGCACTTGCAGCCGCGCTAATGCTAGCGGCGTCGCCAGTGCTGGCCGACGGCCACGC GACGACGATCCGGGGAGAGGTGATCGACACCTGGTGTTACTTCTCAGGCGTCATGGGCGGGCCGGATGCCGTGCAGGGCA CAGCACACCATACCTGCGCGATCTGGTGCAGCGCCGGCGGTATCCCCGTCGGACTTCTGGGTGAAGATGGCACGGTCTAC ATGATCCTGGCGATCGGCGGCGATGATCAAAGCGCCTCTGGCCAGACGCAGCTGGAATTGGCGTCCCACGACATCACCGT CACCGGGCAGGTCTTTGCGCGGGATGGGTTGAACTACCTGGTGGTGGAGGAAGTGGTCGAGGATCACGGCATCACCAACA TCAATCACACCGATTTCGGGGTCGTTCCCGGTTTCGCAATCCCGAACCCGGAGGGCTGA
Upstream 100 bases:
>100_bases CACCGGGTCAGGACCCTGCGCGCCAAAGAATACCTGTCCGCTCAATAATGTGATGCGGTGTTTTCGCCGTCACCTGCTAC GCTTTCCGCCAAGGGACAAC
Downstream 100 bases:
>100_bases GACCATGTGGAGATATCTGATCCCGCTTGCCATTCTGGCATCCCCTGCAGCCGCACAGGAAGGTCCTTTCTCCGAAGGGT CCGAGGCGCGGTCCTGGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MGGFSMKHALAAALMLAASPVLADGHATTIRGEVIDTWCYFSGVMGGPDAVQGTAHHTCAIWCSAGGIPVGLLGEDGTVY MILAIGGDDQSASGQTQLELASHDITVTGQVFARDGLNYLVVEEVVEDHGITNINHTDFGVVPGFAIPNPEG
Sequences:
>Translated_152_residues MGGFSMKHALAAALMLAASPVLADGHATTIRGEVIDTWCYFSGVMGGPDAVQGTAHHTCAIWCSAGGIPVGLLGEDGTVY MILAIGGDDQSASGQTQLELASHDITVTGQVFARDGLNYLVVEEVVEDHGITNINHTDFGVVPGFAIPNPEG >Mature_151_residues GGFSMKHALAAALMLAASPVLADGHATTIRGEVIDTWCYFSGVMGGPDAVQGTAHHTCAIWCSAGGIPVGLLGEDGTVYM ILAIGGDDQSASGQTQLELASHDITVTGQVFARDGLNYLVVEEVVEDHGITNINHTDFGVVPGFAIPNPEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15666; Mature: 15535
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGFSMKHALAAALMLAASPVLADGHATTIRGEVIDTWCYFSGVMGGPDAVQGTAHHTCA CCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCEEEEHHHHCCCCCCCCCCCCCCCCEEE IWCSAGGIPVGLLGEDGTVYMILAIGGDDQSASGQTQLELASHDITVTGQVFARDGLNYL EEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCEE VVEEVVEDHGITNINHTDFGVVPGFAIPNPEG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GGFSMKHALAAALMLAASPVLADGHATTIRGEVIDTWCYFSGVMGGPDAVQGTAHHTCA CCCHHHHHHHHHHHHHCCCEEECCCCEEEECCEEEEHHHHCCCCCCCCCCCCCCCCEEE IWCSAGGIPVGLLGEDGTVYMILAIGGDDQSASGQTQLELASHDITVTGQVFARDGLNYL EEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCEE VVEEVVEDHGITNINHTDFGVVPGFAIPNPEG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA