Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 89055580

GI number: 89055580

Start: 3123961

End: 3124974

Strand: Direct

Name: rbsC [H]

Synonym: Jann_3089

Alternate gene names: 89055580

Gene position: 3123961-3124974 (Clockwise)

Preceding gene: 89055579

Following gene: 89055581

Centisome position: 72.35

GC content: 59.96

Gene sequence:

>1014_bases
ATGAACACGCAGACCCCCGGTGCCCAACCGCCCCCAGCCAGCGGACCCGCACCGCGCGCCCTGACGCTGCGCGGCATCAT
CAACAAAGCCGGGATTGGCCTGGCGCTGGTTCTCCTGATCATCTTCTTCTCGGTCACAACCGAGTTTTTCCTGACCCCCA
ACAACATCACCAACATCCTGACGCAGATCACGATCAACCTGATCCTCGCGGTCGGCATGACATTTGTCATTCTCATCGGT
GGTATCGATCTGTCGGTCGGGTCGGTCATGGCCTTTTCCGCGGTGGTCGCGGGCAAGGTCATCACGCTGCCCGGTATGGG
TCCGACAGAGTTGATCATTCTGGCCGTTCTGGCCGGTCTGATCGCGGGCATGATCTGCGGGATGATCAATGGCGCGATCA
GTGCCTATTGGTCGTTGCCGTCGTTCATCATCACGCTTGGGATGCTGAACATCGCGCGCGGTGCCGGGCTTCAGATTTCG
GGCGCGCAAACAATCTATGCCTTCCCCTTCGCGTTTGAGGAATTCGGCTCGATCCTGATCTATGGCGTCCCGGTTGTCTT
CCTGGTGGCGCTGGCCCTTGTCGGTGTTGCCTGGTTCGTGCTGAACAGCACGGTCTTCGGTCGCCTGATCTACGGGATCG
GCAACAATGAGGAAGCCGTCCGCCTTGCCGGTCATCCGGTGTTCTGGATCAAGGTCGCCGCCTTCACGATCTGTGGCATG
ACCGCAGGCATCGCTGCGATCATCTACATGGCGCGCCTCAATATCTCGTCGCCCATTGCGGGCATCGGGTTTGAGCTGAA
CGCCATCGCCGCCGTCATCATCGGCGGCACCAGCCTGAATGGCGGGCGCGGATCGGTGATCGGCACGCTGTTGGGCGCAT
TCATCATCGGGGTGCTCGCCAACGGTCTGATCCTGATCGGGCTGAGTGATTTCATGCGCCAGATGATCACCGGGGTTGTC
ATCGTCGTGGCCGTCATTCTGGACCATTATCGCGCAAAGTACTCTGCCTCATGA

Upstream 100 bases:

>100_bases
ATCATACGATCCAGGGCGTTTTGCCACGCGCAGACGTCACCCAGGAACGGATCCTGAAACTCGCCTACGGGCAACACGGC
GATATGGAAAGACAAACAGC

Downstream 100 bases:

>100_bases
ACCGCATACCGCTGCTTGACCGTCCCCTCGCCATATTGGTCGCGGAGCGGGCGGATCTGGACGGTACCTTTATCGCCAAT
ACCGCGCAGCCTTGCTTTGC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MNTQTPGAQPPPASGPAPRALTLRGIINKAGIGLALVLLIIFFSVTTEFFLTPNNITNILTQITINLILAVGMTFVILIG
GIDLSVGSVMAFSAVVAGKVITLPGMGPTELIILAVLAGLIAGMICGMINGAISAYWSLPSFIITLGMLNIARGAGLQIS
GAQTIYAFPFAFEEFGSILIYGVPVVFLVALALVGVAWFVLNSTVFGRLIYGIGNNEEAVRLAGHPVFWIKVAAFTICGM
TAGIAAIIYMARLNISSPIAGIGFELNAIAAVIIGGTSLNGGRGSVIGTLLGAFIIGVLANGLILIGLSDFMRQMITGVV
IVVAVILDHYRAKYSAS

Sequences:

>Translated_337_residues
MNTQTPGAQPPPASGPAPRALTLRGIINKAGIGLALVLLIIFFSVTTEFFLTPNNITNILTQITINLILAVGMTFVILIG
GIDLSVGSVMAFSAVVAGKVITLPGMGPTELIILAVLAGLIAGMICGMINGAISAYWSLPSFIITLGMLNIARGAGLQIS
GAQTIYAFPFAFEEFGSILIYGVPVVFLVALALVGVAWFVLNSTVFGRLIYGIGNNEEAVRLAGHPVFWIKVAAFTICGM
TAGIAAIIYMARLNISSPIAGIGFELNAIAAVIIGGTSLNGGRGSVIGTLLGAFIIGVLANGLILIGLSDFMRQMITGVV
IVVAVILDHYRAKYSAS
>Mature_337_residues
MNTQTPGAQPPPASGPAPRALTLRGIINKAGIGLALVLLIIFFSVTTEFFLTPNNITNILTQITINLILAVGMTFVILIG
GIDLSVGSVMAFSAVVAGKVITLPGMGPTELIILAVLAGLIAGMICGMINGAISAYWSLPSFIITLGMLNIARGAGLQIS
GAQTIYAFPFAFEEFGSILIYGVPVVFLVALALVGVAWFVLNSTVFGRLIYGIGNNEEAVRLAGHPVFWIKVAAFTICGM
TAGIAAIIYMARLNISSPIAGIGFELNAIAAVIIGGTSLNGGRGSVIGTLLGAFIIGVLANGLILIGLSDFMRQMITGVV
IVVAVILDHYRAKYSAS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=41.5841584158416, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1790524, Length=325, Percent_Identity=36.6153846153846, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1788896, Length=335, Percent_Identity=32.8358208955224, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI145693152, Length=320, Percent_Identity=32.8125, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87082395, Length=292, Percent_Identity=34.2465753424658, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787793, Length=283, Percent_Identity=30.3886925795053, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=44.5255474452555, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787794, Length=269, Percent_Identity=28.6245353159851, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI145693214, Length=285, Percent_Identity=31.2280701754386, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788471, Length=291, Percent_Identity=32.9896907216495, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34882; Mature: 34882

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQTPGAQPPPASGPAPRALTLRGIINKAGIGLALVLLIIFFSVTTEFFLTPNNITNIL
CCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCHHHHHHH
TQITINLILAVGMTFVILIGGIDLSVGSVMAFSAVVAGKVITLPGMGPTELIILAVLAGL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
IAGMICGMINGAISAYWSLPSFIITLGMLNIARGAGLQISGAQTIYAFPFAFEEFGSILI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCHHHHCCEEH
YGVPVVFLVALALVGVAWFVLNSTVFGRLIYGIGNNEEAVRLAGHPVFWIKVAAFTICGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCCCHHHHHHHHHHHHH
TAGIAAIIYMARLNISSPIAGIGFELNAIAAVIIGGTSLNGGRGSVIGTLLGAFIIGVLA
HHHHHHHHHHHHCCCCCCCCCCCEEHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
NGLILIGLSDFMRQMITGVVIVVAVILDHYRAKYSAS
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNTQTPGAQPPPASGPAPRALTLRGIINKAGIGLALVLLIIFFSVTTEFFLTPNNITNIL
CCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCHHHHHHH
TQITINLILAVGMTFVILIGGIDLSVGSVMAFSAVVAGKVITLPGMGPTELIILAVLAGL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
IAGMICGMINGAISAYWSLPSFIITLGMLNIARGAGLQISGAQTIYAFPFAFEEFGSILI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCHHHHCCEEH
YGVPVVFLVALALVGVAWFVLNSTVFGRLIYGIGNNEEAVRLAGHPVFWIKVAAFTICGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCCCHHHHHHHHHHHHH
TAGIAAIIYMARLNISSPIAGIGFELNAIAAVIIGGTSLNGGRGSVIGTLLGAFIIGVLA
HHHHHHHHHHHHCCCCCCCCCCCEEHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
NGLILIGLSDFMRQMITGVVIVVAVILDHYRAKYSAS
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]