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The map label for this gene is ygbK [C]

Identifier: 89055555

GI number: 89055555

Start: 3097423

End: 3098712

Strand: Direct

Name: ygbK [C]

Synonym: Jann_3064

Alternate gene names: 89055555

Gene position: 3097423-3098712 (Clockwise)

Preceding gene: 89055554

Following gene: 89055558

Centisome position: 71.73

GC content: 67.36

Gene sequence:

>1290_bases
ATGACTGTGCCGCGCCTCGCCTGGTATGGCGACGATTTCACCGGGTCCGCCGCCGTCATGGACGAGCTGGCGCAGGCCGG
GCTGACGGCCGTTCTGTTCACACGGATGCCCGACGATGCAACTGCCACCCGCTTTGCGGGATACGATGCCGTCGGTCTCG
CCGGAACCGCGCGGACCCGCGGGCCCGCCTGGATGAGACGGGAATTGCCGGGCGTCTTCGACTGGATGGAAAGGACCGGC
GCTGACCATCTGCACTACAAGATCTGTTCCACCTTCGACTCGTCAGCCGAGCTTGGGTCGATCGGCCTTGCTGCCGAGAT
CGGTTTGGCGCAGCTCGGCGGATGGGCGCCCTGCCTGACCGCCGCACCGTCCATGGGGCGATGGCAGTGTTACGGGACGC
TGTTCGCCCGCGGACCGGACGGCGCCGCGCACCGGCTCGACCGACACCCGGTGATGCGCCAGCATCCTTCGACGCCCATG
GCAGAGGCCGATCTGGCGCGCCATCTTGCGGAGCAGACTGACCTACCCATCGGCTTGCTCACGCTCGACCAGCTGGCGGG
TGGGGTGCCGGAGCGGGATCGTGATGGGATCGTTTTGCTCGACGCCCAAAGAGAGGCCGACATGGTGCTGGCAGGCGCGA
TCCTAGCGGATAATGGTGCGGGGTTATTGCTTGGCTCCCAAGGGGTTGAAATGGCATTGATCGCCCATTGGCGGGCGGCC
GGGCGGCTGGGTTCCGAGCAACCGCGCACCCCACTTCGACCGGCGCGTCTGGCGGTGGTTTCGGGCTCTGTCTCAGAGGG
AACCGCGGCGCAGATCACAGCGGCGAAGGCGGCCGGTTTTGCAACATTCGCGCTCGACACCGCGTCGCTGCTCGACGGGG
CGGTGCCGGATTTGACCAAAGCCACCGCTGCCCTGCGCCAGGGGGCGTCAATCCTGTGCCACACGGCATTGGGGCCGCAG
GACCCCCGCCTGTCCGCGACACGCGACCGACAACGATCGCTTGGCCTTTCACCGGAAGACACGGCGGAGCGGATTGGCAC
GGCCCTTGGTCAGGTTTTGGCCCGGCTTGCGCCGACAGCCGAACGACTGGTCGTCGCCGGGGGCGACAGTTCAGGCTTCG
TGACCACGGCGCTTGGCGTGGATGCGTTGACGGCTCTTGCTCCGGTGGACCCCGGAGCGCCACTGATGCGCGTTCATGGC
GGAGCAGCCGATGGGGCGGAGCTGGTGTTGAAAGGGGGTCAGATGGGCGCGCGCGATCTCTTTGTTCGGCTGCGGAATGG
CGACCGCTAG

Upstream 100 bases:

>100_bases
ATCTGATCCACGCCGCCGGCGGTGGCATCCTCGGCCACCCTGACGGGCCCCGGGCCGGGGTCGCGGCGATGCGGTCTGCC
TGGGCCGAGGCGATGCACGG

Downstream 100 bases:

>100_bases
GCGACCATAGCCAGCGAGGCCCGCACGGCGCTGTCGATGTCGTCCTTGCTCAATGGGGCATCAGCCCTGCTTGGATCTGC
ATAGTCATCACGGCGCAGAC

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MTVPRLAWYGDDFTGSAAVMDELAQAGLTAVLFTRMPDDATATRFAGYDAVGLAGTARTRGPAWMRRELPGVFDWMERTG
ADHLHYKICSTFDSSAELGSIGLAAEIGLAQLGGWAPCLTAAPSMGRWQCYGTLFARGPDGAAHRLDRHPVMRQHPSTPM
AEADLARHLAEQTDLPIGLLTLDQLAGGVPERDRDGIVLLDAQREADMVLAGAILADNGAGLLLGSQGVEMALIAHWRAA
GRLGSEQPRTPLRPARLAVVSGSVSEGTAAQITAAKAAGFATFALDTASLLDGAVPDLTKATAALRQGASILCHTALGPQ
DPRLSATRDRQRSLGLSPEDTAERIGTALGQVLARLAPTAERLVVAGGDSSGFVTTALGVDALTALAPVDPGAPLMRVHG
GAADGAELVLKGGQMGARDLFVRLRNGDR

Sequences:

>Translated_429_residues
MTVPRLAWYGDDFTGSAAVMDELAQAGLTAVLFTRMPDDATATRFAGYDAVGLAGTARTRGPAWMRRELPGVFDWMERTG
ADHLHYKICSTFDSSAELGSIGLAAEIGLAQLGGWAPCLTAAPSMGRWQCYGTLFARGPDGAAHRLDRHPVMRQHPSTPM
AEADLARHLAEQTDLPIGLLTLDQLAGGVPERDRDGIVLLDAQREADMVLAGAILADNGAGLLLGSQGVEMALIAHWRAA
GRLGSEQPRTPLRPARLAVVSGSVSEGTAAQITAAKAAGFATFALDTASLLDGAVPDLTKATAALRQGASILCHTALGPQ
DPRLSATRDRQRSLGLSPEDTAERIGTALGQVLARLAPTAERLVVAGGDSSGFVTTALGVDALTALAPVDPGAPLMRVHG
GAADGAELVLKGGQMGARDLFVRLRNGDR
>Mature_428_residues
TVPRLAWYGDDFTGSAAVMDELAQAGLTAVLFTRMPDDATATRFAGYDAVGLAGTARTRGPAWMRRELPGVFDWMERTGA
DHLHYKICSTFDSSAELGSIGLAAEIGLAQLGGWAPCLTAAPSMGRWQCYGTLFARGPDGAAHRLDRHPVMRQHPSTPMA
EADLARHLAEQTDLPIGLLTLDQLAGGVPERDRDGIVLLDAQREADMVLAGAILADNGAGLLLGSQGVEMALIAHWRAAG
RLGSEQPRTPLRPARLAVVSGSVSEGTAAQITAAKAAGFATFALDTASLLDGAVPDLTKATAALRQGASILCHTALGPQD
PRLSATRDRQRSLGLSPEDTAERIGTALGQVLARLAPTAERLVVAGGDSSGFVTTALGVDALTALAPVDPGAPLMRVHGG
AADGAELVLKGGQMGARDLFVRLRNGDR

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=410, Percent_Identity=25.609756097561, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 44658; Mature: 44527

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVPRLAWYGDDFTGSAAVMDELAQAGLTAVLFTRMPDDATATRFAGYDAVGLAGTARTR
CCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCC
GPAWMRRELPGVFDWMERTGADHLHYKICSTFDSSAELGSIGLAAEIGLAQLGGWAPCLT
CCHHHHHHCCHHHHHHHHCCCCCEEEHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
AAPSMGRWQCYGTLFARGPDGAAHRLDRHPVMRQHPSTPMAEADLARHLAEQTDLPIGLL
CCCCCCCEEEEEEEEECCCCHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEEE
TLDQLAGGVPERDRDGIVLLDAQREADMVLAGAILADNGAGLLLGSQGVEMALIAHWRAA
EHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHH
GRLGSEQPRTPLRPARLAVVSGSVSEGTAAQITAAKAAGFATFALDTASLLDGAVPDLTK
CCCCCCCCCCCCCCCEEEEEECCCCCCCHHEEEHHHHCCEEHHHHHHHHHHCCCCCHHHH
ATAALRQGASILCHTALGPQDPRLSATRDRQRSLGLSPEDTAERIGTALGQVLARLAPTA
HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
ERLVVAGGDSSGFVTTALGVDALTALAPVDPGAPLMRVHGGAADGAELVLKGGQMGARDL
CEEEEECCCCCCCEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHEEEECCCCCHHHH
FVRLRNGDR
EEEECCCCC
>Mature Secondary Structure 
TVPRLAWYGDDFTGSAAVMDELAQAGLTAVLFTRMPDDATATRFAGYDAVGLAGTARTR
CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCC
GPAWMRRELPGVFDWMERTGADHLHYKICSTFDSSAELGSIGLAAEIGLAQLGGWAPCLT
CCHHHHHHCCHHHHHHHHCCCCCEEEHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
AAPSMGRWQCYGTLFARGPDGAAHRLDRHPVMRQHPSTPMAEADLARHLAEQTDLPIGLL
CCCCCCCEEEEEEEEECCCCHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEEE
TLDQLAGGVPERDRDGIVLLDAQREADMVLAGAILADNGAGLLLGSQGVEMALIAHWRAA
EHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHH
GRLGSEQPRTPLRPARLAVVSGSVSEGTAAQITAAKAAGFATFALDTASLLDGAVPDLTK
CCCCCCCCCCCCCCCEEEEEECCCCCCCHHEEEHHHHCCEEHHHHHHHHHHCCCCCHHHH
ATAALRQGASILCHTALGPQDPRLSATRDRQRSLGLSPEDTAERIGTALGQVLARLAPTA
HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
ERLVVAGGDSSGFVTTALGVDALTALAPVDPGAPLMRVHGGAADGAELVLKGGQMGARDL
CEEEEECCCCCCCEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHEEEECCCCCHHHH
FVRLRNGDR
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]