| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055326
Identifier: 89055326
GI number: 89055326
Start: 2852612
End: 2854333
Strand: Reverse
Name: 89055326
Synonym: Jann_2835
Alternate gene names: NA
Gene position: 2854333-2852612 (Counterclockwise)
Preceding gene: 89055328
Following gene: 89055325
Centisome position: 66.1
GC content: 62.08
Gene sequence:
>1722_bases TTGCTGCCTCAGTTTCCAGTTTTCTCTTGTTTCTCTTTATCAACAGCTGCCGTTCTCGCGTTTGCGCTGTCTCCGCAAGC ATCCGCCCAAGGCATTGAATTACCTTCGCAATCCGTCATTGAGGCGCAACTTGCGGAATTGGGCGCAACTGTCCCCGGCT CGATTTTCGCCATGCAGCCCTTCCGAAACGCACAGACCCTGACGGGCGAGGATGGCACGACCTACACGCTGACCTCGCTC AACCCACACGTTAACTCCTGGTTTGTGCTGGAAACGACGCCCGTCGGTGGACGCCCTAGATTTGTGCACTTTGAAAACGG CGCGCCTGACACCTGGGACATTTCCCTGATTGATGAGGACGGCCCGGCCCTGCTGATCGAAGGCGAGGGTGACAGCTTTG CCTGCGCCCCGTGGGAGGATGGCGAATTGGCGGAGGCGCAATCCAGCTCTCTGCCCTACGCGCCGGTCTGTGATTGGAGC CTGTTCGTGCGCAACCCGGTGTCGGGCAATCGCACGACCCGCGAGGCGGTGGCGGAATTCCTGCGCGAAAACGTGATCTT CGGCGAATCCATCGTGAACCTGATCAAGGGGGCCTTCTTCGAGGATGCCTTCATGGTCTCGTCGGAAGGGGAGGAAGAGC TGGAGGAAATCGATGGCGTCGAACTCCTCGGGACGGCGCTTTTAGACAGCACGCCCAATATGCGGCCCTATATGGGGTTC GACCTGACGGGCACAGATGCCGGCGCGATGACCGCTGGCGCCTGGTATGAGGTGGAGGAAAGCCCCGGCATCTATGCCTC CGTCATGCAGCCGGGCATGATCGCGGGCGAGGTGATGCAGACCGGTGGGGCCAACGGTCTGGACGGGATCGAGCGTCGGG CCGACGTTTATCTGGTGGCCTTTGACATGGCGCGGTTTGACATCGGCTATGAGGTTGGCACCGATCACCCGGCCTTGGGC TGGTCGTCGCGCCCCCAGAACCGGCACAACCAAGGACGCGGGCCGGACGGCTTCAACACGCCCGCGCCGCTGGTGCGCAC CGGCATGCTGAACCCCGCCCTGGTCGACCGCGTCGCCGCGACGTTCACGGCAGGCTTCAAACGCGACCACGGCGCCTGGC GGTTTGGCGATTACGCCACGTTCAACTACGGCCACCATTACGGCTTCATGCAGAATGGCGTGATCCTGTCGCGCCTGTGG CCGAACCTCGCAACCCTGTCGCTGACCCATGATGGGGAGGTGACGATGCGCACCTGGTCCGAGGAGGATGACGCCATCCT GCCCGATCTGGTCTTCGCGCGCCAAAATGGCGTGCCGATTATCGAAGACGGCGTACCGGGGCCGCGTGTGACGTCCTGGG GCGGCGGCAATTGGTCGGGCGATGCGAATGCCGTCCTGCGCACGCTGCGGGGCGGGGCCTGCATGCGCACCGTTGAGGGG CGTCAGTTCTTGATCTACGCCTATTTCTCCACGGCCACGCCGTCGGCAATGGCGCGGACGTTCCAAGCTTACCAATGCGA CTATGCCATGCTGCTCGATATGAACAGCCAGGAGCATACGTATATGGCCCTCTATGTCCATGATGAGGACGGCGAAGAGG ATATGGACGTGCAGCACCTCGTGTCGGGCATGGCCGATGTGGACCCCGATAACGGGCGCGTGGCGCGGTTTATCTCTGCG CCCGACAACCGTGATTTCTTTTACCTGCTGCGGAGGCAATAA
Upstream 100 bases:
>100_bases GCGTCATCGGCTGGTTTGTTGCAAACCTAATCCGGATCTTTCTAATACCCCCGCACGCTGCCCGTTGCGCGGACCCATTT TCATAAGGATGGAGCTTGTC
Downstream 100 bases:
>100_bases GTGATGCGATTGAATTCTCTGGTCGGGGCGGCCTTGGCTGCGGGCCTTCTGGTGGTGAGCGGAGGGGCGGCCACGGCGCA ATCCCTGGCCGAGCGCAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MLPQFPVFSCFSLSTAAVLAFALSPQASAQGIELPSQSVIEAQLAELGATVPGSIFAMQPFRNAQTLTGEDGTTYTLTSL NPHVNSWFVLETTPVGGRPRFVHFENGAPDTWDISLIDEDGPALLIEGEGDSFACAPWEDGELAEAQSSSLPYAPVCDWS LFVRNPVSGNRTTREAVAEFLRENVIFGESIVNLIKGAFFEDAFMVSSEGEEELEEIDGVELLGTALLDSTPNMRPYMGF DLTGTDAGAMTAGAWYEVEESPGIYASVMQPGMIAGEVMQTGGANGLDGIERRADVYLVAFDMARFDIGYEVGTDHPALG WSSRPQNRHNQGRGPDGFNTPAPLVRTGMLNPALVDRVAATFTAGFKRDHGAWRFGDYATFNYGHHYGFMQNGVILSRLW PNLATLSLTHDGEVTMRTWSEEDDAILPDLVFARQNGVPIIEDGVPGPRVTSWGGGNWSGDANAVLRTLRGGACMRTVEG RQFLIYAYFSTATPSAMARTFQAYQCDYAMLLDMNSQEHTYMALYVHDEDGEEDMDVQHLVSGMADVDPDNGRVARFISA PDNRDFFYLLRRQ
Sequences:
>Translated_573_residues MLPQFPVFSCFSLSTAAVLAFALSPQASAQGIELPSQSVIEAQLAELGATVPGSIFAMQPFRNAQTLTGEDGTTYTLTSL NPHVNSWFVLETTPVGGRPRFVHFENGAPDTWDISLIDEDGPALLIEGEGDSFACAPWEDGELAEAQSSSLPYAPVCDWS LFVRNPVSGNRTTREAVAEFLRENVIFGESIVNLIKGAFFEDAFMVSSEGEEELEEIDGVELLGTALLDSTPNMRPYMGF DLTGTDAGAMTAGAWYEVEESPGIYASVMQPGMIAGEVMQTGGANGLDGIERRADVYLVAFDMARFDIGYEVGTDHPALG WSSRPQNRHNQGRGPDGFNTPAPLVRTGMLNPALVDRVAATFTAGFKRDHGAWRFGDYATFNYGHHYGFMQNGVILSRLW PNLATLSLTHDGEVTMRTWSEEDDAILPDLVFARQNGVPIIEDGVPGPRVTSWGGGNWSGDANAVLRTLRGGACMRTVEG RQFLIYAYFSTATPSAMARTFQAYQCDYAMLLDMNSQEHTYMALYVHDEDGEEDMDVQHLVSGMADVDPDNGRVARFISA PDNRDFFYLLRRQ >Mature_573_residues MLPQFPVFSCFSLSTAAVLAFALSPQASAQGIELPSQSVIEAQLAELGATVPGSIFAMQPFRNAQTLTGEDGTTYTLTSL NPHVNSWFVLETTPVGGRPRFVHFENGAPDTWDISLIDEDGPALLIEGEGDSFACAPWEDGELAEAQSSSLPYAPVCDWS LFVRNPVSGNRTTREAVAEFLRENVIFGESIVNLIKGAFFEDAFMVSSEGEEELEEIDGVELLGTALLDSTPNMRPYMGF DLTGTDAGAMTAGAWYEVEESPGIYASVMQPGMIAGEVMQTGGANGLDGIERRADVYLVAFDMARFDIGYEVGTDHPALG WSSRPQNRHNQGRGPDGFNTPAPLVRTGMLNPALVDRVAATFTAGFKRDHGAWRFGDYATFNYGHHYGFMQNGVILSRLW PNLATLSLTHDGEVTMRTWSEEDDAILPDLVFARQNGVPIIEDGVPGPRVTSWGGGNWSGDANAVLRTLRGGACMRTVEG RQFLIYAYFSTATPSAMARTFQAYQCDYAMLLDMNSQEHTYMALYVHDEDGEEDMDVQHLVSGMADVDPDNGRVARFISA PDNRDFFYLLRRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62651; Mature: 62651
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPQFPVFSCFSLSTAAVLAFALSPQASAQGIELPSQSVIEAQLAELGATVPGSIFAMQP CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECC FRNAQTLTGEDGTTYTLTSLNPHVNSWFVLETTPVGGRPRFVHFENGAPDTWDISLIDED CCCCCEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEECC GPALLIEGEGDSFACAPWEDGELAEAQSSSLPYAPVCDWSLFVRNPVSGNRTTREAVAEF CCEEEEECCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH LRENVIFGESIVNLIKGAFFEDAFMVSSEGEEELEEIDGVELLGTALLDSTPNMRPYMGF HHHCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCE DLTGTDAGAMTAGAWYEVEESPGIYASVMQPGMIAGEVMQTGGANGLDGIERRADVYLVA EECCCCCCCEECCCEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHCCCEEEEE FDMARFDIGYEVGTDHPALGWSSRPQNRHNQGRGPDGFNTPAPLVRTGMLNPALVDRVAA EEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHH TFTAGFKRDHGAWRFGDYATFNYGHHYGFMQNGVILSRLWPNLATLSLTHDGEVTMRTWS HHHHCCCCCCCCEECCCEEEECCCCCCCHHCCCEEHHHHCCCEEEEEEECCCCEEEEECC EEDDAILPDLVFARQNGVPIIEDGVPGPRVTSWGGGNWSGDANAVLRTLRGGACMRTVEG CCCCCCCCHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCHHHHHHHHCCCCEEEEECC RQFLIYAYFSTATPSAMARTFQAYQCDYAMLLDMNSQEHTYMALYVHDEDGEEDMDVQHL CEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCHHHH VSGMADVDPDNGRVARFISAPDNRDFFYLLRRQ HHHHHCCCCCCCCEEEEEECCCCCCEEEEEECC >Mature Secondary Structure MLPQFPVFSCFSLSTAAVLAFALSPQASAQGIELPSQSVIEAQLAELGATVPGSIFAMQP CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECC FRNAQTLTGEDGTTYTLTSLNPHVNSWFVLETTPVGGRPRFVHFENGAPDTWDISLIDED CCCCCEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEECC GPALLIEGEGDSFACAPWEDGELAEAQSSSLPYAPVCDWSLFVRNPVSGNRTTREAVAEF CCEEEEECCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH LRENVIFGESIVNLIKGAFFEDAFMVSSEGEEELEEIDGVELLGTALLDSTPNMRPYMGF HHHCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCE DLTGTDAGAMTAGAWYEVEESPGIYASVMQPGMIAGEVMQTGGANGLDGIERRADVYLVA EECCCCCCCEECCCEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHCCCEEEEE FDMARFDIGYEVGTDHPALGWSSRPQNRHNQGRGPDGFNTPAPLVRTGMLNPALVDRVAA EEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHH TFTAGFKRDHGAWRFGDYATFNYGHHYGFMQNGVILSRLWPNLATLSLTHDGEVTMRTWS HHHHCCCCCCCCEECCCEEEECCCCCCCHHCCCEEHHHHCCCEEEEEEECCCCEEEEECC EEDDAILPDLVFARQNGVPIIEDGVPGPRVTSWGGGNWSGDANAVLRTLRGGACMRTVEG CCCCCCCCHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCHHHHHHHHCCCCEEEEECC RQFLIYAYFSTATPSAMARTFQAYQCDYAMLLDMNSQEHTYMALYVHDEDGEEDMDVQHL CEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCHHHH VSGMADVDPDNGRVARFISAPDNRDFFYLLRRQ HHHHHCCCCCCCCEEEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA