| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is gsiB [H]
Identifier: 89055310
GI number: 89055310
Start: 2832541
End: 2834130
Strand: Direct
Name: gsiB [H]
Synonym: Jann_2819
Alternate gene names: 89055310
Gene position: 2832541-2834130 (Clockwise)
Preceding gene: 89055306
Following gene: 89055311
Centisome position: 65.6
GC content: 62.96
Gene sequence:
>1590_bases ATGACCAACCGACTATTCGCGATCACCGCGACCCTTCTGGCCACCACGGCCATCACCGCCACATCGCTATCGGCCGAGAC GCTGCGATGGGCGCGCGCCGCCGAGGCGCTGACGCTGGATCCGCATTCCCAGAACGAAGGGCCGACCACGACCCTCATGC ACCAGATCTACGACCCCCTCATCGTGCGCAACATGGCCGGTGAGATGGAACCCTCGCTCGCCACCGAATGGGCCCCGTCC GAGGACAACCCCAACGTCTGGGTCTTCCAGATCCGCGAAGGCGTGACCTTCCATGGCGGCGAAAGCTTTGACGCCTCCGA CGTCGTCTTCTCGCTCAACCGCGCGATGCAGGAGGCCTCGAACTTCAAGGAATTGCTGTCCGGCGTCGTTGAGGTCCGCG CCACGGGTGATTTCACCGTCGAGATTGAAACCGAAGGCCCCAACCCGCTGCTGGCCAACAACCTGACCAACATCATGATC ATGGATGAGGGTTGGACCGTCGAAAACGGCGCTGAAAACGTGCAGGATTATGCCGCAGGCGAAGACACGTTCGCCGCGCG CAACGTCAACGGCACCGGCGCATTCGTGCTGCAAAGCCGGGAGGCTGACGTGCAGACCGTGCTGACCCAGAACCCCGATT ACTGGGGCATCGGTCAGTTCCCGATGGATGTGACCGAGATCATCTTCACCCCGATCCAGAACCCCGCCACGCGCCTCGCG GCCTTCCTGGGCGGCGAAGTCGACTTCATCCAGGACGTGCCTGTGCAGGATCTGGAGCGGGTCGAGGCCGCCGACGGCAT CGGTCTGGGCACCGGACCGCAGAACCGCAACATCTTCTTCGGCCTCAATGTCGGCGCCGATGATCTGGAGCGCGACAACG TGGACGGGGAAAACCCGCTGGCCAATCCCATGGTCCGGGCCGCGATGAACCTCGCCATCAACCGCGAGGCGATCCAGCAG GTCGTCATGCGGGGCCAGTCCGATCCCACCGGCGCAATGCTGCCTCCGCCCGTCAACGGCTGGACCGAGGATCTGGAAGC CTACCCAGCCTATGACGTGGCCGCAGCCCAGGCGCTGATGGATGAGGCAGGCTATGGCGACGGCTTCTCGATCCAGCTCG ATTGCCCCAATGACCGCTACGTCAACGACGAATCGATCTGCCAGGCGGCCGTGGGCATGTTCGCCCAGATCGGCATCACG GTGAACCTGTCCGCCCTGCCCCGCGCCCAGCATTTCCCGCTGATCGCCAATGGCGAAACGGACCTGTACATGCTGGGGTG GGGCGTGCCGACATATGATTCCGAGTATGTCTTCAACTTCCTCTACCACACCCGCAACGAAGGCCGTGGAAGCTGGAACG GCACCGGCTTCTCCAACGCCGCGATGGACGACATGATCGTGTCCCTGTCGTCGGAGACGGATCTTGAGGCCCGCGATCAG ATCATCGCCGATCTCTGGACCATGGCCACCGCCGAGCAGATCTACCTGCCCATCCACCACCAGGTCCTCAACTGGGGCAT CTCCGATGCCTGGAGCACGCTGGTGGACGCCGACGATCAGGTGAAGTTCAAGTATTTTGAACTGAACTGA
Upstream 100 bases:
>100_bases GCGGTGTCCAAGCCCTGTCTGGACATCTCCCCCGCCGCGCCAATACTCTGCCCCACGGCAACGTCCGCACCCCGACACGG GGACCAACCGGGAGACTACA
Downstream 100 bases:
>100_bases CGCCTCAGAACGCAGGCGCGTCACAGCCGTCAAGGCCTGCATGCCCGGGGGACATCTCCCGGGCATGTTGCGGTCTGATG TCCTGCAAAGACAGGGGCAA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MTNRLFAITATLLATTAITATSLSAETLRWARAAEALTLDPHSQNEGPTTTLMHQIYDPLIVRNMAGEMEPSLATEWAPS EDNPNVWVFQIREGVTFHGGESFDASDVVFSLNRAMQEASNFKELLSGVVEVRATGDFTVEIETEGPNPLLANNLTNIMI MDEGWTVENGAENVQDYAAGEDTFAARNVNGTGAFVLQSREADVQTVLTQNPDYWGIGQFPMDVTEIIFTPIQNPATRLA AFLGGEVDFIQDVPVQDLERVEAADGIGLGTGPQNRNIFFGLNVGADDLERDNVDGENPLANPMVRAAMNLAINREAIQQ VVMRGQSDPTGAMLPPPVNGWTEDLEAYPAYDVAAAQALMDEAGYGDGFSIQLDCPNDRYVNDESICQAAVGMFAQIGIT VNLSALPRAQHFPLIANGETDLYMLGWGVPTYDSEYVFNFLYHTRNEGRGSWNGTGFSNAAMDDMIVSLSSETDLEARDQ IIADLWTMATAEQIYLPIHHQVLNWGISDAWSTLVDADDQVKFKYFELN
Sequences:
>Translated_529_residues MTNRLFAITATLLATTAITATSLSAETLRWARAAEALTLDPHSQNEGPTTTLMHQIYDPLIVRNMAGEMEPSLATEWAPS EDNPNVWVFQIREGVTFHGGESFDASDVVFSLNRAMQEASNFKELLSGVVEVRATGDFTVEIETEGPNPLLANNLTNIMI MDEGWTVENGAENVQDYAAGEDTFAARNVNGTGAFVLQSREADVQTVLTQNPDYWGIGQFPMDVTEIIFTPIQNPATRLA AFLGGEVDFIQDVPVQDLERVEAADGIGLGTGPQNRNIFFGLNVGADDLERDNVDGENPLANPMVRAAMNLAINREAIQQ VVMRGQSDPTGAMLPPPVNGWTEDLEAYPAYDVAAAQALMDEAGYGDGFSIQLDCPNDRYVNDESICQAAVGMFAQIGIT VNLSALPRAQHFPLIANGETDLYMLGWGVPTYDSEYVFNFLYHTRNEGRGSWNGTGFSNAAMDDMIVSLSSETDLEARDQ IIADLWTMATAEQIYLPIHHQVLNWGISDAWSTLVDADDQVKFKYFELN >Mature_528_residues TNRLFAITATLLATTAITATSLSAETLRWARAAEALTLDPHSQNEGPTTTLMHQIYDPLIVRNMAGEMEPSLATEWAPSE DNPNVWVFQIREGVTFHGGESFDASDVVFSLNRAMQEASNFKELLSGVVEVRATGDFTVEIETEGPNPLLANNLTNIMIM DEGWTVENGAENVQDYAAGEDTFAARNVNGTGAFVLQSREADVQTVLTQNPDYWGIGQFPMDVTEIIFTPIQNPATRLAA FLGGEVDFIQDVPVQDLERVEAADGIGLGTGPQNRNIFFGLNVGADDLERDNVDGENPLANPMVRAAMNLAINREAIQQV VMRGQSDPTGAMLPPPVNGWTEDLEAYPAYDVAAAQALMDEAGYGDGFSIQLDCPNDRYVNDESICQAAVGMFAQIGITV NLSALPRAQHFPLIANGETDLYMLGWGVPTYDSEYVFNFLYHTRNEGRGSWNGTGFSNAAMDDMIVSLSSETDLEARDQI IADLWTMATAEQIYLPIHHQVLNWGISDAWSTLVDADDQVKFKYFELN
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=531, Percent_Identity=22.9755178907721, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1789966, Length=502, Percent_Identity=24.7011952191235, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI87081878, Length=470, Percent_Identity=22.5531914893617, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1789397, Length=502, Percent_Identity=22.1115537848606, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1787762, Length=481, Percent_Identity=22.8690228690229, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1787495, Length=529, Percent_Identity=18.9035916824197, Blast_Score=81, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 57948; Mature: 57817
Theoretical pI: Translated: 3.83; Mature: 3.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNRLFAITATLLATTAITATSLSAETLRWARAAEALTLDPHSQNEGPTTTLMHQIYDPL CCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHH IVRNMAGEMEPSLATEWAPSEDNPNVWVFQIREGVTFHGGESFDASDVVFSLNRAMQEAS HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHH NFKELLSGVVEVRATGDFTVEIETEGPNPLLANNLTNIMIMDEGWTVENGAENVQDYAAG HHHHHHHHHHEEEECCCEEEEEECCCCCCEECCCCCEEEEEECCCEECCCHHHHHHHHCC EDTFAARNVNGTGAFVLQSREADVQTVLTQNPDYWGIGQFPMDVTEIIFTPIQNPATRLA CCCEEEECCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHH AFLGGEVDFIQDVPVQDLERVEAADGIGLGTGPQNRNIFFGLNVGADDLERDNVDGENPL HHHCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC ANPMVRAAMNLAINREAIQQVVMRGQSDPTGAMLPPPVNGWTEDLEAYPAYDVAAAQALM CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH DEAGYGDGFSIQLDCPNDRYVNDESICQAAVGMFAQIGITVNLSALPRAQHFPLIANGET HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEECCCC DLYMLGWGVPTYDSEYVFNFLYHTRNEGRGSWNGTGFSNAAMDDMIVSLSSETDLEARDQ CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHEECCCCCCCHHHHH IIADLWTMATAEQIYLPIHHQVLNWGISDAWSTLVDADDQVKFKYFELN HHHHHHHHHHHHHEEEEHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECC >Mature Secondary Structure TNRLFAITATLLATTAITATSLSAETLRWARAAEALTLDPHSQNEGPTTTLMHQIYDPL CCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHH IVRNMAGEMEPSLATEWAPSEDNPNVWVFQIREGVTFHGGESFDASDVVFSLNRAMQEAS HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHH NFKELLSGVVEVRATGDFTVEIETEGPNPLLANNLTNIMIMDEGWTVENGAENVQDYAAG HHHHHHHHHHEEEECCCEEEEEECCCCCCEECCCCCEEEEEECCCEECCCHHHHHHHHCC EDTFAARNVNGTGAFVLQSREADVQTVLTQNPDYWGIGQFPMDVTEIIFTPIQNPATRLA CCCEEEECCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHH AFLGGEVDFIQDVPVQDLERVEAADGIGLGTGPQNRNIFFGLNVGADDLERDNVDGENPL HHHCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC ANPMVRAAMNLAINREAIQQVVMRGQSDPTGAMLPPPVNGWTEDLEAYPAYDVAAAQALM CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH DEAGYGDGFSIQLDCPNDRYVNDESICQAAVGMFAQIGITVNLSALPRAQHFPLIANGET HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEECCCC DLYMLGWGVPTYDSEYVFNFLYHTRNEGRGSWNGTGFSNAAMDDMIVSLSSETDLEARDQ CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHEECCCCCCCHHHHH IIADLWTMATAEQIYLPIHHQVLNWGISDAWSTLVDADDQVKFKYFELN HHHHHHHHHHHHHEEEEHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA