Click here to switch to the map view.

The map label for this gene is ybgK [C]

Identifier: 89055295

GI number: 89055295

Start: 2816562

End: 2817554

Strand: Direct

Name: ybgK [C]

Synonym: Jann_2804

Alternate gene names: 89055295

Gene position: 2816562-2817554 (Clockwise)

Preceding gene: 89055294

Following gene: 89055296

Centisome position: 65.23

GC content: 64.85

Gene sequence:

>993_bases
ATGAGCGTGGCCCGGTTCAAGGTGCTGTTCGCTGGTCCGTTGGTGTCGTTCCAGGATGGCGGCCGCTTCGGCCACATGCG
CTTTGGCGTGCCCGCGTCCGGCCCGATGGATCGGTTCGGCTTCGCCGCCGTCCATGCGATGTTGAACCAGCCCGAGGCCG
CGGCAATTGAGATTTCCCTTGGCGGTTTGGTTCTGGAATGTGTCGACGGCTCCGTGACCTGCGCCGTGGCGGGTGGGGCT
TTCAGCCTCACAACGCAGGCGTCTGGATGGCAGGTCGCGACCGTCCACGCCGGAGATAAACTGACCCTCCGCGCAGGCGA
TTGGGGCAGTTGGGCCTACCTCGCATTCTCTGGGGAAATCTCATGCGATCAATGGCTTGGCTGTTCGGCCACCCACGCGC
TCTCGGGCCTTGGCGGTGGTAGCCTGCGCACCGGCGACGTGTTTGAGGTTCGCGATTGTGCCCCGCGCCCGACCCGCGAA
GGGGCCTATGACGCCCCCGACATCGCGCGGCCCGTGGCGGACATTCGCGTGATCATCGGCCCCCAGGATCAGCATTTCGC
CCCCGATGCGCAGGACATTTTGACCGCTGCACCTTACACACTGACCGATGCGTTTGACCGGATGGGCGTGCGGCTCGACG
GCACTGTGCTTCCTTTGGGCGATGCGCTCTCAATCCCGTCTGAGCCGATCTTGCGCGGGTCTATTCAGGTGGCGGGCGAT
GGCGTGCCCGTGGTCCTCCTGGCCGATCACCAAACCACTGGCGGCTATCCCAAGATTGCGACCGTGCTGTCCACCGACAC
GGACCGCCTGGCGCAACTCCGTGCGGGCGACAGCTTGCGGTTTCACGCGATTTCCGCCGCGGACGCCGTTCTCGCTGTCC
GCCATGATCACGCAGCCCGCATCGAGGCCCTGTCAGATCTCGCCGCACCCCGAGCCTCGCTCAGCCAAAAGTTGATGCAA
ACCAATCTGATCAGCGGCGTCACCGGAGATTGA

Upstream 100 bases:

>100_bases
CCGCAGAGGTCATTCAGGACGACAAATTCCTGTTCAACGTCGGCGACACGGTCACCTTCACACGCGTCGCCCGCCCCGAT
TTGCCCGAGCGATTGCAGGT

Downstream 100 bases:

>100_bases
GGTCCCCGGCAGGCCTCCGAAAACAGACCCCCGTGTGTCGCCGTCAGACCAGAATCACGCGCGTCACCCCGCCACTCTCA
TCCCATCGGACCGAGGGAGA

Product: allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSVARFKVLFAGPLVSFQDGGRFGHMRFGVPASGPMDRFGFAAVHAMLNQPEAAAIEISLGGLVLECVDGSVTCAVAGGA
FSLTTQASGWQVATVHAGDKLTLRAGDWGSWAYLAFSGEISCDQWLGCSATHALSGLGGGSLRTGDVFEVRDCAPRPTRE
GAYDAPDIARPVADIRVIIGPQDQHFAPDAQDILTAAPYTLTDAFDRMGVRLDGTVLPLGDALSIPSEPILRGSIQVAGD
GVPVVLLADHQTTGGYPKIATVLSTDTDRLAQLRAGDSLRFHAISAADAVLAVRHDHAARIEALSDLAAPRASLSQKLMQ
TNLISGVTGD

Sequences:

>Translated_330_residues
MSVARFKVLFAGPLVSFQDGGRFGHMRFGVPASGPMDRFGFAAVHAMLNQPEAAAIEISLGGLVLECVDGSVTCAVAGGA
FSLTTQASGWQVATVHAGDKLTLRAGDWGSWAYLAFSGEISCDQWLGCSATHALSGLGGGSLRTGDVFEVRDCAPRPTRE
GAYDAPDIARPVADIRVIIGPQDQHFAPDAQDILTAAPYTLTDAFDRMGVRLDGTVLPLGDALSIPSEPILRGSIQVAGD
GVPVVLLADHQTTGGYPKIATVLSTDTDRLAQLRAGDSLRFHAISAADAVLAVRHDHAARIEALSDLAAPRASLSQKLMQ
TNLISGVTGD
>Mature_329_residues
SVARFKVLFAGPLVSFQDGGRFGHMRFGVPASGPMDRFGFAAVHAMLNQPEAAAIEISLGGLVLECVDGSVTCAVAGGAF
SLTTQASGWQVATVHAGDKLTLRAGDWGSWAYLAFSGEISCDQWLGCSATHALSGLGGGSLRTGDVFEVRDCAPRPTREG
AYDAPDIARPVADIRVIIGPQDQHFAPDAQDILTAAPYTLTDAFDRMGVRLDGTVLPLGDALSIPSEPILRGSIQVAGDG
VPVVLLADHQTTGGYPKIATVLSTDTDRLAQLRAGDSLRFHAISAADAVLAVRHDHAARIEALSDLAAPRASLSQKLMQT
NLISGVTGD

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=309, Percent_Identity=31.3915857605178, Blast_Score=128, Evalue=6e-31,
Organism=Saccharomyces cerevisiae, GI6319685, Length=309, Percent_Identity=27.1844660194175, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 34416; Mature: 34285

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVARFKVLFAGPLVSFQDGGRFGHMRFGVPASGPMDRFGFAAVHAMLNQPEAAAIEISL
CCCEEEEEEEECCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
GGLVLECVDGSVTCAVAGGAFSLTTQASGWQVATVHAGDKLTLRAGDWGSWAYLAFSGEI
CCEEEEECCCCEEEEEECCEEEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCC
SCDQWLGCSATHALSGLGGGSLRTGDVFEVRDCAPRPTREGAYDAPDIARPVADIRVIIG
CHHHCCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEEC
PQDQHFAPDAQDILTAAPYTLTDAFDRMGVRLDGTVLPLGDALSIPSEPILRGSIQVAGD
CCCCCCCCCHHHHHHCCCCHHHHHHHHCCEEECCEEEECCCCCCCCCCCCEECEEEEECC
GVPVVLLADHQTTGGYPKIATVLSTDTDRLAQLRAGDSLRFHAISAADAVLAVRHDHAAR
CEEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHCCCCEEEEEECCCCEEEEEECCHHHH
IEALSDLAAPRASLSQKLMQTNLISGVTGD
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVARFKVLFAGPLVSFQDGGRFGHMRFGVPASGPMDRFGFAAVHAMLNQPEAAAIEISL
CCEEEEEEEECCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
GGLVLECVDGSVTCAVAGGAFSLTTQASGWQVATVHAGDKLTLRAGDWGSWAYLAFSGEI
CCEEEEECCCCEEEEEECCEEEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCC
SCDQWLGCSATHALSGLGGGSLRTGDVFEVRDCAPRPTREGAYDAPDIARPVADIRVIIG
CHHHCCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEEC
PQDQHFAPDAQDILTAAPYTLTDAFDRMGVRLDGTVLPLGDALSIPSEPILRGSIQVAGD
CCCCCCCCCHHHHHHCCCCHHHHHHHHCCEEECCEEEECCCCCCCCCCCCEECEEEEECC
GVPVVLLADHQTTGGYPKIATVLSTDTDRLAQLRAGDSLRFHAISAADAVLAVRHDHAAR
CEEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHCCCCEEEEEECCCCEEEEEECCHHHH
IEALSDLAAPRASLSQKLMQTNLISGVTGD
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]