| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055281
Identifier: 89055281
GI number: 89055281
Start: 2807942
End: 2808448
Strand: Direct
Name: 89055281
Synonym: Jann_2790
Alternate gene names: NA
Gene position: 2807942-2808448 (Clockwise)
Preceding gene: 89055280
Following gene: 89055283
Centisome position: 65.03
GC content: 59.37
Gene sequence:
>507_bases ATGTTTGGCCTGTCCGGCCCACCGCCAACGCGTAGTCTTCACGAATTCGTGACCTCATGTCTTAAGGAGACTCAATTGTT TCGTTATCTTGTCGCCGTCCTCACCCTGATCGGTCTGTCGGCCTGTACCCCAACCACGACGACGATCGTTGGTGGCACCA GCTACGCGTCCGCCAGCTGTTTTTCGGGCCCCTACGTCTTTGATCTGGATGTTCGCGTCCCCGCCTCCTACGGACCGGTG AGCCAGATGCGCCAATACGCAAACGGTCCCAATGGGTTGGAGTATACCTGCAACCTCGTGGGCTACGGATATCCGGTGCA AGACACTGATTTCCCGATCTATCTGGGTGAACTATATGGCGGCACGTCCGGTCTGTGCGTCAGTGCTGTCACCGTGAACC GGGGCCGTGTTTTGTCCTGCGCAAGCGAGGCTCAGGTCCGCGCCGCTGTGGCCAATACGGGCTCGACCCTGCGCCTGACC CAGTGGCAGGACTTCCCGACCAGTTGA
Upstream 100 bases:
>100_bases ATGATTGCGAATTTCCTCGCCTGGCGGCCGTAGTCGCCGTGCACGCGCAGGGGCGTGCGCCCGCGGTTGAGGCGGACTGC GTCCAATCGTCCGCAAATCC
Downstream 100 bases:
>100_bases CGAATACCTTGCCAAGCACAAAGGGCGCGCCCGATGGGACGCGCCCTTTTTAATTGAATTTCTGGTACTTACTGCACGCG CACCCAATTCTGACGCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 168; Mature: 168
Protein sequence:
>168_residues MFGLSGPPPTRSLHEFVTSCLKETQLFRYLVAVLTLIGLSACTPTTTTIVGGTSYASASCFSGPYVFDLDVRVPASYGPV SQMRQYANGPNGLEYTCNLVGYGYPVQDTDFPIYLGELYGGTSGLCVSAVTVNRGRVLSCASEAQVRAAVANTGSTLRLT QWQDFPTS
Sequences:
>Translated_168_residues MFGLSGPPPTRSLHEFVTSCLKETQLFRYLVAVLTLIGLSACTPTTTTIVGGTSYASASCFSGPYVFDLDVRVPASYGPV SQMRQYANGPNGLEYTCNLVGYGYPVQDTDFPIYLGELYGGTSGLCVSAVTVNRGRVLSCASEAQVRAAVANTGSTLRLT QWQDFPTS >Mature_168_residues MFGLSGPPPTRSLHEFVTSCLKETQLFRYLVAVLTLIGLSACTPTTTTIVGGTSYASASCFSGPYVFDLDVRVPASYGPV SQMRQYANGPNGLEYTCNLVGYGYPVQDTDFPIYLGELYGGTSGLCVSAVTVNRGRVLSCASEAQVRAAVANTGSTLRLT QWQDFPTS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17904; Mature: 17904
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGLSGPPPTRSLHEFVTSCLKETQLFRYLVAVLTLIGLSACTPTTTTIVGGTSYASASC CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCC FSGPYVFDLDVRVPASYGPVSQMRQYANGPNGLEYTCNLVGYGYPVQDTDFPIYLGELYG CCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCC GTSGLCVSAVTVNRGRVLSCASEAQVRAAVANTGSTLRLTQWQDFPTS CCCCCEEEEEEECCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCC >Mature Secondary Structure MFGLSGPPPTRSLHEFVTSCLKETQLFRYLVAVLTLIGLSACTPTTTTIVGGTSYASASC CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCC FSGPYVFDLDVRVPASYGPVSQMRQYANGPNGLEYTCNLVGYGYPVQDTDFPIYLGELYG CCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCC GTSGLCVSAVTVNRGRVLSCASEAQVRAAVANTGSTLRLTQWQDFPTS CCCCCEEEEEEECCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA